Experiment: biofilm; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00385 and LRK53_RS00390 are separated by 185 nucleotides LRK53_RS00390 and LRK53_RS00395 are separated by 217 nucleotides
LRK53_RS00385: LRK53_RS00385 - aldehyde dehydrogenase family protein, at 86,864 to 88,348
_RS00385
LRK53_RS00390: LRK53_RS00390 - 4,5-DOPA dioxygenase extradiol, at 88,534 to 89,331
_RS00390
LRK53_RS00395: LRK53_RS00395 - SDR family oxidoreductase, at 89,549 to 90,313
_RS00395
Position (kb) 88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.966 kb on + strand, within LRK53_RS00385 at 88.236 kb on + strand at 88.237 kb on - strand at 88.237 kb on - strand at 88.317 kb on + strand at 88.317 kb on + strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.348 kb on + strand at 88.348 kb on + strand at 88.348 kb on + strand at 88.349 kb on - strand at 88.477 kb on - strand at 88.477 kb on - strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.506 kb on - strand at 88.506 kb on - strand at 88.506 kb on - strand at 88.548 kb on + strand at 88.548 kb on + strand at 88.549 kb on - strand at 88.696 kb on + strand, within LRK53_RS00390 at 88.696 kb on + strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.786 kb on + strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.909 kb on + strand, within LRK53_RS00390 at 88.910 kb on - strand, within LRK53_RS00390 at 88.910 kb on - strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.287 kb on - strand at 89.343 kb on + strand at 89.343 kb on + strand at 89.344 kb on - strand at 89.344 kb on - strand at 89.484 kb on + strand at 89.484 kb on + strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.748 kb on - strand, within LRK53_RS00395 at 89.748 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.952 kb on + strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 90.077 kb on + strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; remove 87,678 + LRK53_RS00385 0.55 -1.0 87,678 + LRK53_RS00385 0.55 -1.3 87,678 + LRK53_RS00385 0.55 -2.0 87,678 + LRK53_RS00385 0.55 -1.5 87,679 - LRK53_RS00385 0.55 -1.5 87,679 - LRK53_RS00385 0.55 -0.9 87,679 - LRK53_RS00385 0.55 -0.5 87,679 - LRK53_RS00385 0.55 -1.3 87,679 - LRK53_RS00385 0.55 -0.2 87,679 - LRK53_RS00385 0.55 +0.1 87,966 + LRK53_RS00385 0.74 -2.1 88,236 + -1.3 88,237 - -0.7 88,237 - -2.2 88,317 + -1.1 88,317 + -0.2 88,318 - -0.3 88,318 - -0.4 88,318 - -1.8 88,318 - -0.5 88,318 - -0.5 88,318 - -2.1 88,318 - -1.8 88,318 - -1.6 88,348 + -2.9 88,348 + -0.3 88,348 + -0.7 88,349 - +1.7 88,477 - -1.8 88,477 - -2.9 88,497 + -1.8 88,497 + -1.4 88,497 + -0.7 88,497 + -1.2 88,497 + +0.3 88,497 + +0.0 88,497 + -0.8 88,498 - -1.7 88,498 - +2.9 88,498 - -0.1 88,498 - -0.3 88,498 - -0.2 88,498 - -0.8 88,498 - -0.8 88,498 - -1.0 88,498 - -1.0 88,505 + +0.3 88,505 + -0.6 88,505 + +2.1 88,505 + -1.3 88,505 + -0.1 88,505 + +0.2 88,506 - +1.1 88,506 - -0.3 88,506 - -0.7 88,548 + -0.3 88,548 + -2.0 88,549 - -0.3 88,696 + LRK53_RS00390 0.20 -2.2 88,696 + LRK53_RS00390 0.20 -1.6 88,697 - LRK53_RS00390 0.20 -1.6 88,697 - LRK53_RS00390 0.20 -2.0 88,697 - LRK53_RS00390 0.20 -1.0 88,697 - LRK53_RS00390 0.20 -2.5 88,697 - LRK53_RS00390 0.20 -2.0 88,786 + LRK53_RS00390 0.32 -0.8 88,787 - LRK53_RS00390 0.32 +1.1 88,787 - LRK53_RS00390 0.32 -0.9 88,909 + LRK53_RS00390 0.47 -1.0 88,910 - LRK53_RS00390 0.47 -3.0 88,910 - LRK53_RS00390 0.47 -0.5 89,062 + LRK53_RS00390 0.66 +0.7 89,062 + LRK53_RS00390 0.66 -0.8 89,062 + LRK53_RS00390 0.66 -2.0 89,062 + LRK53_RS00390 0.66 +0.1 89,062 + LRK53_RS00390 0.66 -1.0 89,062 + LRK53_RS00390 0.66 -0.4 89,062 + LRK53_RS00390 0.66 +0.7 89,062 + LRK53_RS00390 0.66 -1.3 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -1.0 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 -0.1 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 -1.0 89,062 + LRK53_RS00390 0.66 -0.9 89,062 + LRK53_RS00390 0.66 +0.1 89,062 + LRK53_RS00390 0.66 +0.1 89,062 + LRK53_RS00390 0.66 +1.1 89,062 + LRK53_RS00390 0.66 -1.4 89,062 + LRK53_RS00390 0.66 -0.0 89,062 + LRK53_RS00390 0.66 -0.8 89,062 + LRK53_RS00390 0.66 -0.8 89,062 + LRK53_RS00390 0.66 -1.9 89,062 + LRK53_RS00390 0.66 -1.3 89,062 + LRK53_RS00390 0.66 -0.6 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -2.8 89,062 + LRK53_RS00390 0.66 +1.2 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 +0.1 89,062 + LRK53_RS00390 0.66 -1.2 89,062 + LRK53_RS00390 0.66 +0.3 89,063 - LRK53_RS00390 0.66 -0.8 89,063 - LRK53_RS00390 0.66 -0.7 89,063 - LRK53_RS00390 0.66 -1.9 89,063 - LRK53_RS00390 0.66 -0.9 89,063 - LRK53_RS00390 0.66 -0.6 89,063 - LRK53_RS00390 0.66 -0.9 89,063 - LRK53_RS00390 0.66 -1.5 89,063 - LRK53_RS00390 0.66 -0.4 89,063 - LRK53_RS00390 0.66 +0.9 89,063 - LRK53_RS00390 0.66 -0.8 89,063 - LRK53_RS00390 0.66 -0.3 89,063 - LRK53_RS00390 0.66 -2.0 89,063 - LRK53_RS00390 0.66 -1.4 89,063 - LRK53_RS00390 0.66 -1.4 89,063 - LRK53_RS00390 0.66 -0.7 89,063 - LRK53_RS00390 0.66 -2.5 89,063 - LRK53_RS00390 0.66 -1.4 89,063 - LRK53_RS00390 0.66 -0.5 89,063 - LRK53_RS00390 0.66 +0.5 89,063 - LRK53_RS00390 0.66 -0.7 89,167 + LRK53_RS00390 0.79 +0.1 89,167 + LRK53_RS00390 0.79 -0.2 89,167 + LRK53_RS00390 0.79 -2.4 89,167 + LRK53_RS00390 0.79 -0.7 89,167 + LRK53_RS00390 0.79 -2.2 89,167 + LRK53_RS00390 0.79 -0.7 89,167 + LRK53_RS00390 0.79 -0.5 89,168 - LRK53_RS00390 0.79 -0.3 89,168 - LRK53_RS00390 0.79 -0.7 89,168 - LRK53_RS00390 0.79 +1.2 89,218 + LRK53_RS00390 0.86 -0.9 89,218 + LRK53_RS00390 0.86 +0.4 89,219 - LRK53_RS00390 0.86 -0.6 89,219 - LRK53_RS00390 0.86 +1.3 89,219 - LRK53_RS00390 0.86 -0.9 89,233 + LRK53_RS00390 0.88 -1.5 89,233 + LRK53_RS00390 0.88 +0.9 89,233 + LRK53_RS00390 0.88 -1.0 89,233 + LRK53_RS00390 0.88 -1.8 89,233 + LRK53_RS00390 0.88 -0.2 89,233 + LRK53_RS00390 0.88 -3.0 89,233 + LRK53_RS00390 0.88 +2.0 89,234 - LRK53_RS00390 0.88 -1.8 89,234 - LRK53_RS00390 0.88 -0.5 89,234 - LRK53_RS00390 0.88 -0.2 89,234 - LRK53_RS00390 0.88 +1.1 89,234 - LRK53_RS00390 0.88 -1.9 89,234 - LRK53_RS00390 0.88 -1.2 89,234 - LRK53_RS00390 0.88 -1.4 89,234 - LRK53_RS00390 0.88 -1.5 89,234 - LRK53_RS00390 0.88 -0.5 89,234 - LRK53_RS00390 0.88 +0.8 89,234 - LRK53_RS00390 0.88 +0.1 89,234 - LRK53_RS00390 0.88 -0.2 89,234 - LRK53_RS00390 0.88 -1.3 89,234 - LRK53_RS00390 0.88 +0.1 89,287 - -0.7 89,343 + +0.9 89,343 + -2.4 89,344 - -1.7 89,344 - +0.2 89,484 + -0.4 89,484 + +1.6 89,485 - -1.5 89,485 - +0.7 89,485 - -2.3 89,485 - -0.3 89,748 - LRK53_RS00395 0.26 -1.3 89,748 - LRK53_RS00395 0.26 -0.2 89,872 - LRK53_RS00395 0.42 +0.3 89,872 - LRK53_RS00395 0.42 -0.7 89,872 - LRK53_RS00395 0.42 -0.5 89,952 + LRK53_RS00395 0.53 -1.2 89,953 - LRK53_RS00395 0.53 -0.7 89,953 - LRK53_RS00395 0.53 -1.6 90,077 + LRK53_RS00395 0.69 -2.3 90,078 - LRK53_RS00395 0.69 -1.7 90,078 - LRK53_RS00395 0.69 -0.7
Or see this region's nucleotide sequence