Experiment: biofilm; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00215 and LRK53_RS00220 are separated by 85 nucleotides LRK53_RS00220 and LRK53_RS00225 overlap by 4 nucleotides LRK53_RS00225 and LRK53_RS00230 are separated by 74 nucleotides
LRK53_RS00215: LRK53_RS00215 - TetR/AcrR family transcriptional regulator, at 53,479 to 54,087
_RS00215
LRK53_RS00220: LRK53_RS00220 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 54,173 to 54,979
_RS00220
LRK53_RS00225: LRK53_RS00225 - alpha/beta fold hydrolase, at 54,976 to 55,995
_RS00225
LRK53_RS00230: LRK53_RS00230 - GH92 family glycosyl hydrolase, at 56,070 to 59,453
_RS00230
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.995 kb on + strand, within LRK53_RS00215 at 53.995 kb on + strand, within LRK53_RS00215 at 53.995 kb on + strand, within LRK53_RS00215 at 53.995 kb on + strand, within LRK53_RS00215 at 53.995 kb on + strand, within LRK53_RS00215 at 53.995 kb on + strand, within LRK53_RS00215 at 53.995 kb on + strand, within LRK53_RS00215 at 53.995 kb on + strand, within LRK53_RS00215 at 53.996 kb on - strand, within LRK53_RS00215 at 53.996 kb on - strand, within LRK53_RS00215 at 53.996 kb on - strand, within LRK53_RS00215 at 53.996 kb on - strand, within LRK53_RS00215 at 53.996 kb on - strand, within LRK53_RS00215 at 54.129 kb on + strand at 54.129 kb on + strand at 54.129 kb on + strand at 54.129 kb on + strand at 54.129 kb on + strand at 54.129 kb on + strand at 54.130 kb on - strand at 54.130 kb on - strand at 54.130 kb on - strand at 54.130 kb on - strand at 54.130 kb on - strand at 54.157 kb on + strand at 54.158 kb on - strand at 54.233 kb on + strand at 54.234 kb on - strand at 54.237 kb on + strand at 54.237 kb on + strand at 54.237 kb on + strand at 54.237 kb on + strand at 54.237 kb on + strand at 54.238 kb on - strand at 55.097 kb on + strand, within LRK53_RS00225 at 55.097 kb on + strand, within LRK53_RS00225 at 55.097 kb on + strand, within LRK53_RS00225 at 55.097 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.240 kb on + strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.241 kb on - strand, within LRK53_RS00225 at 55.582 kb on + strand, within LRK53_RS00225 at 55.582 kb on + strand, within LRK53_RS00225 at 55.583 kb on - strand, within LRK53_RS00225 at 55.583 kb on - strand, within LRK53_RS00225 at 55.646 kb on - strand, within LRK53_RS00225 at 55.711 kb on - strand, within LRK53_RS00225 at 55.735 kb on + strand, within LRK53_RS00225 at 55.735 kb on + strand, within LRK53_RS00225 at 55.735 kb on + strand, within LRK53_RS00225 at 55.735 kb on + strand, within LRK53_RS00225 at 55.736 kb on - strand, within LRK53_RS00225 at 55.736 kb on - strand, within LRK53_RS00225 at 55.747 kb on + strand, within LRK53_RS00225 at 55.930 kb on + strand at 55.930 kb on + strand at 55.930 kb on + strand at 55.931 kb on - strand at 55.931 kb on - strand at 55.931 kb on - strand at 55.942 kb on + strand at 55.942 kb on + strand at 55.942 kb on + strand at 55.942 kb on + strand at 55.943 kb on - strand at 55.943 kb on - strand at 55.943 kb on - strand at 56.003 kb on + strand at 56.003 kb on + strand at 56.004 kb on - strand at 56.004 kb on - strand at 56.126 kb on + strand at 56.126 kb on + strand at 56.126 kb on + strand at 56.126 kb on + strand at 56.126 kb on + strand at 56.126 kb on + strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.127 kb on - strand at 56.370 kb on + strand at 56.370 kb on + strand at 56.371 kb on - strand at 56.371 kb on - strand at 56.371 kb on - strand at 56.371 kb on - strand at 56.412 kb on + strand, within LRK53_RS00230 at 56.412 kb on + strand, within LRK53_RS00230 at 56.413 kb on - strand, within LRK53_RS00230 at 56.413 kb on - strand, within LRK53_RS00230 at 56.413 kb on - strand, within LRK53_RS00230 at 56.413 kb on - strand, within LRK53_RS00230 at 56.413 kb on - strand, within LRK53_RS00230 at 56.463 kb on + strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.464 kb on - strand, within LRK53_RS00230 at 56.570 kb on + strand, within LRK53_RS00230 at 56.571 kb on - strand, within LRK53_RS00230 at 56.571 kb on - strand, within LRK53_RS00230 at 56.578 kb on - strand, within LRK53_RS00230 at 56.688 kb on + strand, within LRK53_RS00230 at 56.689 kb on - strand, within LRK53_RS00230 at 56.689 kb on - strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.877 kb on + strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.878 kb on - strand, within LRK53_RS00230 at 56.884 kb on - strand, within LRK53_RS00230 at 56.884 kb on - strand, within LRK53_RS00230 at 56.884 kb on - strand, within LRK53_RS00230
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; remove 53,995 + LRK53_RS00215 0.85 +1.4 53,995 + LRK53_RS00215 0.85 +0.5 53,995 + LRK53_RS00215 0.85 -0.4 53,995 + LRK53_RS00215 0.85 +0.1 53,995 + LRK53_RS00215 0.85 -0.3 53,995 + LRK53_RS00215 0.85 -2.5 53,995 + LRK53_RS00215 0.85 -0.4 53,995 + LRK53_RS00215 0.85 -0.2 53,996 - LRK53_RS00215 0.85 -0.3 53,996 - LRK53_RS00215 0.85 +0.1 53,996 - LRK53_RS00215 0.85 -0.8 53,996 - LRK53_RS00215 0.85 -0.5 53,996 - LRK53_RS00215 0.85 -1.2 54,129 + -0.2 54,129 + -0.7 54,129 + -0.8 54,129 + -0.5 54,129 + -0.3 54,129 + -2.9 54,130 - +0.3 54,130 - -0.2 54,130 - -0.7 54,130 - -0.3 54,130 - -1.4 54,157 + +0.5 54,158 - -3.1 54,233 + +1.4 54,234 - -1.3 54,237 + -0.7 54,237 + -0.7 54,237 + -1.3 54,237 + -3.1 54,237 + -0.4 54,238 - -1.1 55,097 + LRK53_RS00225 0.12 +0.1 55,097 + LRK53_RS00225 0.12 -0.0 55,097 + LRK53_RS00225 0.12 -1.0 55,097 + LRK53_RS00225 0.12 -0.5 55,240 + LRK53_RS00225 0.26 -0.3 55,240 + LRK53_RS00225 0.26 +1.4 55,240 + LRK53_RS00225 0.26 +0.1 55,240 + LRK53_RS00225 0.26 +0.7 55,240 + LRK53_RS00225 0.26 -0.4 55,240 + LRK53_RS00225 0.26 +1.3 55,240 + LRK53_RS00225 0.26 +0.9 55,240 + LRK53_RS00225 0.26 -0.5 55,241 - LRK53_RS00225 0.26 +0.5 55,241 - LRK53_RS00225 0.26 -0.9 55,241 - LRK53_RS00225 0.26 -0.5 55,241 - LRK53_RS00225 0.26 -0.3 55,241 - LRK53_RS00225 0.26 +2.2 55,241 - LRK53_RS00225 0.26 -2.4 55,241 - LRK53_RS00225 0.26 -0.5 55,241 - LRK53_RS00225 0.26 -0.5 55,241 - LRK53_RS00225 0.26 -0.7 55,241 - LRK53_RS00225 0.26 -0.8 55,241 - LRK53_RS00225 0.26 -1.3 55,241 - LRK53_RS00225 0.26 -0.5 55,582 + LRK53_RS00225 0.59 -0.9 55,582 + LRK53_RS00225 0.59 -0.7 55,583 - LRK53_RS00225 0.60 -1.8 55,583 - LRK53_RS00225 0.60 +0.5 55,646 - LRK53_RS00225 0.66 -0.8 55,711 - LRK53_RS00225 0.72 -1.0 55,735 + LRK53_RS00225 0.74 -0.9 55,735 + LRK53_RS00225 0.74 -0.5 55,735 + LRK53_RS00225 0.74 -0.3 55,735 + LRK53_RS00225 0.74 -0.9 55,736 - LRK53_RS00225 0.75 -0.5 55,736 - LRK53_RS00225 0.75 -0.8 55,747 + LRK53_RS00225 0.76 -1.5 55,930 + -1.6 55,930 + +0.7 55,930 + +1.8 55,931 - -2.1 55,931 - -1.3 55,931 - -0.5 55,942 + +0.7 55,942 + -0.9 55,942 + -2.6 55,942 + -0.3 55,943 - +0.1 55,943 - -1.2 55,943 - +1.3 56,003 + -2.5 56,003 + -1.1 56,004 - -0.0 56,004 - -0.2 56,126 + -1.0 56,126 + -1.3 56,126 + -0.4 56,126 + -2.1 56,126 + -2.6 56,126 + -2.8 56,127 - +0.5 56,127 - +0.1 56,127 - -1.7 56,127 - +0.8 56,127 - -1.0 56,127 - -0.5 56,127 - +0.8 56,127 - -2.5 56,127 - +1.1 56,127 - -0.7 56,370 + -0.3 56,370 + -0.9 56,371 - -0.7 56,371 - +0.3 56,371 - +0.8 56,371 - -1.0 56,412 + LRK53_RS00230 0.10 +0.3 56,412 + LRK53_RS00230 0.10 -1.4 56,413 - LRK53_RS00230 0.10 -1.0 56,413 - LRK53_RS00230 0.10 +0.2 56,413 - LRK53_RS00230 0.10 -1.9 56,413 - LRK53_RS00230 0.10 +0.7 56,413 - LRK53_RS00230 0.10 -0.5 56,463 + LRK53_RS00230 0.12 -0.3 56,464 - LRK53_RS00230 0.12 -2.6 56,464 - LRK53_RS00230 0.12 -1.3 56,464 - LRK53_RS00230 0.12 -1.4 56,464 - LRK53_RS00230 0.12 +0.3 56,464 - LRK53_RS00230 0.12 +0.8 56,464 - LRK53_RS00230 0.12 -1.2 56,464 - LRK53_RS00230 0.12 -2.2 56,464 - LRK53_RS00230 0.12 -0.7 56,464 - LRK53_RS00230 0.12 -2.0 56,464 - LRK53_RS00230 0.12 -0.8 56,570 + LRK53_RS00230 0.15 -0.4 56,571 - LRK53_RS00230 0.15 -0.5 56,571 - LRK53_RS00230 0.15 +1.2 56,578 - LRK53_RS00230 0.15 -0.3 56,688 + LRK53_RS00230 0.18 -1.2 56,689 - LRK53_RS00230 0.18 -1.6 56,689 - LRK53_RS00230 0.18 +0.3 56,877 + LRK53_RS00230 0.24 -0.4 56,877 + LRK53_RS00230 0.24 -0.5 56,877 + LRK53_RS00230 0.24 +0.3 56,877 + LRK53_RS00230 0.24 -2.1 56,877 + LRK53_RS00230 0.24 -1.1 56,877 + LRK53_RS00230 0.24 +1.7 56,877 + LRK53_RS00230 0.24 -1.4 56,877 + LRK53_RS00230 0.24 +1.5 56,877 + LRK53_RS00230 0.24 -0.7 56,877 + LRK53_RS00230 0.24 -2.8 56,877 + LRK53_RS00230 0.24 +0.1 56,877 + LRK53_RS00230 0.24 -0.4 56,877 + LRK53_RS00230 0.24 +0.3 56,877 + LRK53_RS00230 0.24 +0.1 56,877 + LRK53_RS00230 0.24 +0.3 56,877 + LRK53_RS00230 0.24 -0.7 56,877 + LRK53_RS00230 0.24 -0.6 56,877 + LRK53_RS00230 0.24 -0.7 56,877 + LRK53_RS00230 0.24 -1.7 56,877 + LRK53_RS00230 0.24 +0.4 56,877 + LRK53_RS00230 0.24 -2.3 56,877 + LRK53_RS00230 0.24 +1.7 56,877 + LRK53_RS00230 0.24 +1.3 56,877 + LRK53_RS00230 0.24 -0.7 56,877 + LRK53_RS00230 0.24 -0.9 56,877 + LRK53_RS00230 0.24 +0.5 56,877 + LRK53_RS00230 0.24 -0.3 56,877 + LRK53_RS00230 0.24 +1.5 56,877 + LRK53_RS00230 0.24 -0.6 56,877 + LRK53_RS00230 0.24 -0.8 56,877 + LRK53_RS00230 0.24 +1.4 56,877 + LRK53_RS00230 0.24 +0.1 56,878 - LRK53_RS00230 0.24 +0.4 56,878 - LRK53_RS00230 0.24 -0.8 56,878 - LRK53_RS00230 0.24 -1.7 56,878 - LRK53_RS00230 0.24 -0.2 56,878 - LRK53_RS00230 0.24 +1.4 56,878 - LRK53_RS00230 0.24 -0.8 56,878 - LRK53_RS00230 0.24 -0.5 56,878 - LRK53_RS00230 0.24 +0.5 56,878 - LRK53_RS00230 0.24 +0.8 56,878 - LRK53_RS00230 0.24 -0.5 56,878 - LRK53_RS00230 0.24 +0.1 56,878 - LRK53_RS00230 0.24 -0.5 56,878 - LRK53_RS00230 0.24 -0.6 56,878 - LRK53_RS00230 0.24 -1.8 56,878 - LRK53_RS00230 0.24 +1.7 56,878 - LRK53_RS00230 0.24 -1.8 56,878 - LRK53_RS00230 0.24 -1.9 56,878 - LRK53_RS00230 0.24 -1.0 56,878 - LRK53_RS00230 0.24 -2.1 56,878 - LRK53_RS00230 0.24 -1.3 56,878 - LRK53_RS00230 0.24 -0.8 56,878 - LRK53_RS00230 0.24 -0.3 56,878 - LRK53_RS00230 0.24 -2.2 56,878 - LRK53_RS00230 0.24 -1.9 56,878 - LRK53_RS00230 0.24 -1.9 56,878 - LRK53_RS00230 0.24 -0.7 56,878 - LRK53_RS00230 0.24 +1.2 56,878 - LRK53_RS00230 0.24 -0.9 56,878 - LRK53_RS00230 0.24 -1.6 56,878 - LRK53_RS00230 0.24 -3.1 56,878 - LRK53_RS00230 0.24 +1.2 56,878 - LRK53_RS00230 0.24 -1.5 56,878 - LRK53_RS00230 0.24 -0.8 56,884 - LRK53_RS00230 0.24 -0.7 56,884 - LRK53_RS00230 0.24 -1.7 56,884 - LRK53_RS00230 0.24 -0.5
Or see this region's nucleotide sequence