Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44005

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS43985 and QEN71_RS43990 are separated by 99 nucleotidesQEN71_RS43990 and QEN71_RS43995 overlap by 8 nucleotidesQEN71_RS43995 and QEN71_RS44000 are separated by 71 nucleotidesQEN71_RS44000 and QEN71_RS44005 are separated by 81 nucleotidesQEN71_RS44005 and QEN71_RS44010 are separated by 258 nucleotides QEN71_RS43985: QEN71_RS43985 - hypothetical protein, at 273,598 to 273,990 _RS43985 QEN71_RS43990: QEN71_RS43990 - hypothetical protein, at 274,090 to 274,242 _RS43990 QEN71_RS43995: QEN71_RS43995 - hypothetical protein, at 274,235 to 274,465 _RS43995 QEN71_RS44000: QEN71_RS44000 - hypothetical protein, at 274,537 to 274,758 _RS44000 QEN71_RS44005: QEN71_RS44005 - primase-helicase zinc-binding domain-containing protein, at 274,840 to 275,958 _RS44005 QEN71_RS44010: QEN71_RS44010 - hypothetical protein, at 276,217 to 277,044 _RS44010 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.916 kb on - strand, within QEN71_RS43985at 274.017 kb on + strandat 274.020 kb on + strandat 274.020 kb on + strandat 274.021 kb on - strandat 274.032 kb on + strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.033 kb on - strandat 274.186 kb on + strand, within QEN71_RS43990at 274.186 kb on + strand, within QEN71_RS43990at 274.249 kb on + strandat 274.249 kb on + strandat 274.250 kb on - strandat 274.250 kb on - strandat 274.448 kb on + strandat 274.463 kb on + strandat 274.464 kb on + strandat 274.464 kb on - strandat 274.471 kb on + strandat 274.471 kb on + strandat 274.539 kb on - strandat 274.586 kb on + strand, within QEN71_RS44000at 274.587 kb on - strand, within QEN71_RS44000at 274.587 kb on - strand, within QEN71_RS44000at 274.665 kb on - strand, within QEN71_RS44000at 274.684 kb on - strand, within QEN71_RS44000at 274.997 kb on + strand, within QEN71_RS44005at 274.998 kb on - strand, within QEN71_RS44005at 274.998 kb on - strand, within QEN71_RS44005at 275.080 kb on + strand, within QEN71_RS44005at 275.094 kb on + strand, within QEN71_RS44005at 275.209 kb on + strand, within QEN71_RS44005at 275.210 kb on - strand, within QEN71_RS44005at 275.210 kb on - strand, within QEN71_RS44005at 275.222 kb on - strand, within QEN71_RS44005at 275.222 kb on - strand, within QEN71_RS44005at 275.325 kb on + strand, within QEN71_RS44005at 275.326 kb on - strand, within QEN71_RS44005at 275.529 kb on - strand, within QEN71_RS44005at 275.671 kb on + strand, within QEN71_RS44005at 275.671 kb on + strand, within QEN71_RS44005at 275.671 kb on + strand, within QEN71_RS44005at 275.672 kb on - strand, within QEN71_RS44005at 275.672 kb on - strand, within QEN71_RS44005at 275.672 kb on - strand, within QEN71_RS44005at 275.813 kb on + strand, within QEN71_RS44005at 275.813 kb on + strand, within QEN71_RS44005at 275.814 kb on - strand, within QEN71_RS44005at 275.814 kb on - strand, within QEN71_RS44005at 275.814 kb on - strand, within QEN71_RS44005at 275.814 kb on - strand, within QEN71_RS44005at 275.888 kb on + strandat 275.888 kb on + strandat 275.888 kb on + strandat 275.888 kb on + strandat 275.889 kb on - strandat 275.889 kb on - strandat 275.889 kb on - strandat 275.943 kb on + strandat 275.943 kb on + strandat 275.943 kb on + strandat 276.011 kb on - strandat 276.171 kb on + strandat 276.171 kb on + strandat 276.171 kb on + strandat 276.172 kb on - strandat 276.231 kb on + strandat 276.354 kb on + strand, within QEN71_RS44010at 276.355 kb on - strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.449 kb on + strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.450 kb on - strand, within QEN71_RS44010at 276.513 kb on - strand, within QEN71_RS44010at 276.805 kb on - strand, within QEN71_RS44010at 276.805 kb on - strand, within QEN71_RS44010at 276.830 kb on + strand, within QEN71_RS44010at 276.830 kb on + strand, within QEN71_RS44010

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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273,916 - QEN71_RS43985 0.81 +1.3
274,017 + -0.8
274,020 + -0.7
274,020 + +0.7
274,021 - -0.9
274,032 + +0.1
274,033 - -0.4
274,033 - -0.6
274,033 - -0.4
274,033 - +0.0
274,033 - +2.3
274,033 - +1.7
274,033 - +0.3
274,033 - +0.0
274,033 - +1.7
274,186 + QEN71_RS43990 0.63 -0.2
274,186 + QEN71_RS43990 0.63 +1.3
274,249 + -2.3
274,249 + -1.2
274,250 - -1.1
274,250 - +1.5
274,448 + -0.7
274,463 + +0.7
274,464 + -0.8
274,464 - -1.1
274,471 + +1.8
274,471 + +0.1
274,539 - +0.7
274,586 + QEN71_RS44000 0.22 +0.5
274,587 - QEN71_RS44000 0.23 -1.2
274,587 - QEN71_RS44000 0.23 +0.1
274,665 - QEN71_RS44000 0.58 -1.3
274,684 - QEN71_RS44000 0.66 -0.8
274,997 + QEN71_RS44005 0.14 +0.2
274,998 - QEN71_RS44005 0.14 -0.3
274,998 - QEN71_RS44005 0.14 +0.1
275,080 + QEN71_RS44005 0.21 -0.6
275,094 + QEN71_RS44005 0.23 -0.9
275,209 + QEN71_RS44005 0.33 +1.6
275,210 - QEN71_RS44005 0.33 -1.6
275,210 - QEN71_RS44005 0.33 -1.3
275,222 - QEN71_RS44005 0.34 +1.0
275,222 - QEN71_RS44005 0.34 +0.6
275,325 + QEN71_RS44005 0.43 +1.1
275,326 - QEN71_RS44005 0.43 +0.3
275,529 - QEN71_RS44005 0.62 +0.6
275,671 + QEN71_RS44005 0.74 +1.3
275,671 + QEN71_RS44005 0.74 -0.9
275,671 + QEN71_RS44005 0.74 -1.0
275,672 - QEN71_RS44005 0.74 -0.4
275,672 - QEN71_RS44005 0.74 +0.4
275,672 - QEN71_RS44005 0.74 +0.6
275,813 + QEN71_RS44005 0.87 +0.2
275,813 + QEN71_RS44005 0.87 -0.2
275,814 - QEN71_RS44005 0.87 -2.4
275,814 - QEN71_RS44005 0.87 -0.7
275,814 - QEN71_RS44005 0.87 +0.2
275,814 - QEN71_RS44005 0.87 -0.0
275,888 + +0.0
275,888 + -1.6
275,888 + +0.9
275,888 + -1.6
275,889 - +0.4
275,889 - +1.0
275,889 - -1.0
275,943 + +1.3
275,943 + +0.4
275,943 + +1.0
276,011 - -0.5
276,171 + -1.0
276,171 + +0.2
276,171 + +0.3
276,172 - -0.1
276,231 + -0.9
276,354 + QEN71_RS44010 0.17 -0.6
276,355 - QEN71_RS44010 0.17 -0.4
276,449 + QEN71_RS44010 0.28 -0.8
276,449 + QEN71_RS44010 0.28 -0.3
276,449 + QEN71_RS44010 0.28 +1.2
276,449 + QEN71_RS44010 0.28 +1.7
276,449 + QEN71_RS44010 0.28 -0.7
276,449 + QEN71_RS44010 0.28 +1.5
276,449 + QEN71_RS44010 0.28 -0.2
276,449 + QEN71_RS44010 0.28 -0.2
276,449 + QEN71_RS44010 0.28 -0.3
276,449 + QEN71_RS44010 0.28 -0.9
276,449 + QEN71_RS44010 0.28 +0.5
276,449 + QEN71_RS44010 0.28 +0.7
276,449 + QEN71_RS44010 0.28 -1.5
276,449 + QEN71_RS44010 0.28 +0.5
276,449 + QEN71_RS44010 0.28 +0.6
276,450 - QEN71_RS44010 0.28 -0.0
276,450 - QEN71_RS44010 0.28 -0.1
276,450 - QEN71_RS44010 0.28 -0.3
276,450 - QEN71_RS44010 0.28 +0.7
276,450 - QEN71_RS44010 0.28 -0.8
276,450 - QEN71_RS44010 0.28 -1.3
276,450 - QEN71_RS44010 0.28 +0.1
276,450 - QEN71_RS44010 0.28 +0.2
276,450 - QEN71_RS44010 0.28 -1.4
276,450 - QEN71_RS44010 0.28 +0.3
276,450 - QEN71_RS44010 0.28 +1.2
276,450 - QEN71_RS44010 0.28 +0.1
276,450 - QEN71_RS44010 0.28 -1.3
276,450 - QEN71_RS44010 0.28 +0.8
276,450 - QEN71_RS44010 0.28 -0.9
276,450 - QEN71_RS44010 0.28 +0.4
276,450 - QEN71_RS44010 0.28 -1.5
276,450 - QEN71_RS44010 0.28 +0.0
276,450 - QEN71_RS44010 0.28 +0.3
276,450 - QEN71_RS44010 0.28 -1.6
276,450 - QEN71_RS44010 0.28 -0.7
276,513 - QEN71_RS44010 0.36 -0.2
276,805 - QEN71_RS44010 0.71 +1.0
276,805 - QEN71_RS44010 0.71 -0.1
276,830 + QEN71_RS44010 0.74 -0.3
276,830 + QEN71_RS44010 0.74 +2.3

Or see this region's nucleotide sequence