Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41280 and QEN71_RS41285 are separated by 146 nucleotides QEN71_RS41285 and QEN71_RS41290 are separated by 27 nucleotides
QEN71_RS41280: QEN71_RS41280 - DNA-binding transcriptional regulator DsdC, at 330,294 to 331,235
_RS41280
QEN71_RS41285: QEN71_RS41285 - aldehyde dehydrogenase, at 331,382 to 332,881
_RS41285
QEN71_RS41290: QEN71_RS41290 - dihydrodipicolinate synthase family protein, at 332,909 to 333,820
_RS41290
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.383 kb on + strand at 330.384 kb on - strand at 330.441 kb on - strand, within QEN71_RS41280 at 330.608 kb on + strand, within QEN71_RS41280 at 330.616 kb on - strand, within QEN71_RS41280 at 330.792 kb on + strand, within QEN71_RS41280 at 330.793 kb on - strand, within QEN71_RS41280 at 330.793 kb on - strand, within QEN71_RS41280 at 330.814 kb on + strand, within QEN71_RS41280 at 330.837 kb on + strand, within QEN71_RS41280 at 330.837 kb on + strand, within QEN71_RS41280 at 331.019 kb on + strand, within QEN71_RS41280 at 331.019 kb on + strand, within QEN71_RS41280 at 331.022 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.140 kb on - strand, within QEN71_RS41280 at 331.140 kb on - strand, within QEN71_RS41280 at 331.143 kb on + strand at 331.143 kb on + strand at 331.146 kb on + strand at 331.147 kb on - strand at 331.205 kb on - strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.344 kb on + strand at 331.402 kb on + strand at 331.419 kb on + strand at 331.473 kb on + strand at 331.555 kb on + strand, within QEN71_RS41285 at 331.555 kb on + strand, within QEN71_RS41285 at 331.556 kb on - strand, within QEN71_RS41285 at 331.556 kb on - strand, within QEN71_RS41285 at 331.556 kb on - strand, within QEN71_RS41285 at 331.602 kb on + strand, within QEN71_RS41285 at 331.602 kb on + strand, within QEN71_RS41285 at 331.603 kb on - strand, within QEN71_RS41285 at 331.815 kb on + strand, within QEN71_RS41285 at 331.816 kb on - strand, within QEN71_RS41285 at 331.816 kb on - strand, within QEN71_RS41285 at 331.939 kb on + strand, within QEN71_RS41285 at 332.179 kb on + strand, within QEN71_RS41285 at 332.179 kb on + strand, within QEN71_RS41285 at 332.180 kb on - strand, within QEN71_RS41285 at 332.180 kb on - strand, within QEN71_RS41285 at 332.399 kb on + strand, within QEN71_RS41285 at 332.399 kb on + strand, within QEN71_RS41285 at 332.466 kb on + strand, within QEN71_RS41285 at 332.466 kb on + strand, within QEN71_RS41285 at 332.624 kb on + strand, within QEN71_RS41285 at 332.625 kb on - strand, within QEN71_RS41285 at 332.625 kb on - strand, within QEN71_RS41285 at 332.625 kb on - strand, within QEN71_RS41285 at 332.660 kb on + strand, within QEN71_RS41285 at 332.661 kb on - strand, within QEN71_RS41285 at 332.835 kb on - strand at 332.835 kb on - strand at 332.919 kb on + strand at 332.919 kb on + strand at 332.919 kb on + strand at 332.920 kb on - strand at 333.046 kb on - strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.095 kb on - strand, within QEN71_RS41290 at 333.160 kb on - strand, within QEN71_RS41290 at 333.557 kb on - strand, within QEN71_RS41290 at 333.663 kb on + strand, within QEN71_RS41290 at 333.663 kb on + strand, within QEN71_RS41290 at 333.794 kb on - strand at 333.804 kb on + strand at 333.805 kb on - strand at 333.805 kb on - strand at 333.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 330,383 + -0.1 330,384 - +0.1 330,441 - QEN71_RS41280 0.16 -1.0 330,608 + QEN71_RS41280 0.33 +0.7 330,616 - QEN71_RS41280 0.34 -1.5 330,792 + QEN71_RS41280 0.53 +0.7 330,793 - QEN71_RS41280 0.53 -1.9 330,793 - QEN71_RS41280 0.53 +0.4 330,814 + QEN71_RS41280 0.55 -1.6 330,837 + QEN71_RS41280 0.58 +0.4 330,837 + QEN71_RS41280 0.58 -1.1 331,019 + QEN71_RS41280 0.77 -1.0 331,019 + QEN71_RS41280 0.77 +0.3 331,022 + QEN71_RS41280 0.77 -0.1 331,139 + QEN71_RS41280 0.90 -1.3 331,139 + QEN71_RS41280 0.90 +0.3 331,139 + QEN71_RS41280 0.90 -1.5 331,139 + QEN71_RS41280 0.90 -0.3 331,139 + QEN71_RS41280 0.90 +1.1 331,140 - QEN71_RS41280 0.90 -0.7 331,140 - QEN71_RS41280 0.90 +0.3 331,143 + +0.3 331,143 + -0.4 331,146 + -0.4 331,147 - -0.8 331,205 - +0.5 331,335 + +0.3 331,335 + +0.1 331,335 + -0.5 331,335 + +0.2 331,344 + +0.4 331,402 + +0.4 331,419 + -0.4 331,473 + -0.3 331,555 + QEN71_RS41285 0.12 +0.4 331,555 + QEN71_RS41285 0.12 -0.5 331,556 - QEN71_RS41285 0.12 -0.1 331,556 - QEN71_RS41285 0.12 +0.5 331,556 - QEN71_RS41285 0.12 +1.5 331,602 + QEN71_RS41285 0.15 +0.9 331,602 + QEN71_RS41285 0.15 -1.4 331,603 - QEN71_RS41285 0.15 +0.1 331,815 + QEN71_RS41285 0.29 -1.6 331,816 - QEN71_RS41285 0.29 +1.9 331,816 - QEN71_RS41285 0.29 +0.1 331,939 + QEN71_RS41285 0.37 -0.5 332,179 + QEN71_RS41285 0.53 -0.3 332,179 + QEN71_RS41285 0.53 +0.1 332,180 - QEN71_RS41285 0.53 -1.7 332,180 - QEN71_RS41285 0.53 +0.1 332,399 + QEN71_RS41285 0.68 +1.0 332,399 + QEN71_RS41285 0.68 +0.4 332,466 + QEN71_RS41285 0.72 -1.6 332,466 + QEN71_RS41285 0.72 +0.5 332,624 + QEN71_RS41285 0.83 -0.6 332,625 - QEN71_RS41285 0.83 -0.5 332,625 - QEN71_RS41285 0.83 +0.8 332,625 - QEN71_RS41285 0.83 +0.5 332,660 + QEN71_RS41285 0.85 -0.2 332,661 - QEN71_RS41285 0.85 +0.5 332,835 - -0.1 332,835 - +2.1 332,919 + +0.3 332,919 + -1.4 332,919 + +0.4 332,920 - +0.1 333,046 - QEN71_RS41290 0.15 +0.5 333,087 + QEN71_RS41290 0.20 -0.5 333,087 + QEN71_RS41290 0.20 -0.3 333,087 + QEN71_RS41290 0.20 +0.9 333,087 + QEN71_RS41290 0.20 -0.5 333,087 + QEN71_RS41290 0.20 +0.3 333,088 - QEN71_RS41290 0.20 +0.7 333,088 - QEN71_RS41290 0.20 -0.7 333,088 - QEN71_RS41290 0.20 +0.9 333,088 - QEN71_RS41290 0.20 -0.4 333,095 - QEN71_RS41290 0.20 +0.5 333,160 - QEN71_RS41290 0.28 -0.5 333,557 - QEN71_RS41290 0.71 -1.1 333,663 + QEN71_RS41290 0.83 +2.2 333,663 + QEN71_RS41290 0.83 +0.2 333,794 - +0.1 333,804 + +0.7 333,805 - +0.6 333,805 - -0.7 333,805 - -0.9
Or see this region's nucleotide sequence