Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35885

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35880 and QEN71_RS35885 overlap by 1 nucleotidesQEN71_RS35885 and QEN71_RS35890 are separated by 155 nucleotides QEN71_RS35880: QEN71_RS35880 - ABC transporter substrate-binding protein, at 1,430,801 to 1,431,832 _RS35880 QEN71_RS35885: QEN71_RS35885 - hypothetical protein, at 1,431,832 to 1,432,260 _RS35885 QEN71_RS35890: QEN71_RS35890 - PAS domain S-box protein, at 1,432,416 to 1,433,690 _RS35890 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1430.933 kb on + strand, within QEN71_RS35880at 1430.933 kb on + strand, within QEN71_RS35880at 1430.933 kb on + strand, within QEN71_RS35880at 1430.933 kb on + strand, within QEN71_RS35880at 1430.934 kb on - strand, within QEN71_RS35880at 1430.934 kb on - strand, within QEN71_RS35880at 1430.934 kb on - strand, within QEN71_RS35880at 1430.934 kb on - strand, within QEN71_RS35880at 1430.934 kb on - strand, within QEN71_RS35880at 1430.934 kb on - strand, within QEN71_RS35880at 1431.005 kb on + strand, within QEN71_RS35880at 1431.005 kb on + strand, within QEN71_RS35880at 1431.005 kb on + strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.006 kb on - strand, within QEN71_RS35880at 1431.081 kb on + strand, within QEN71_RS35880at 1431.156 kb on + strand, within QEN71_RS35880at 1431.187 kb on + strand, within QEN71_RS35880at 1431.188 kb on - strand, within QEN71_RS35880at 1431.206 kb on + strand, within QEN71_RS35880at 1431.207 kb on - strand, within QEN71_RS35880at 1431.207 kb on - strand, within QEN71_RS35880at 1431.207 kb on - strand, within QEN71_RS35880at 1431.207 kb on - strand, within QEN71_RS35880at 1431.207 kb on - strand, within QEN71_RS35880at 1431.265 kb on + strand, within QEN71_RS35880at 1431.265 kb on + strand, within QEN71_RS35880at 1431.265 kb on + strand, within QEN71_RS35880at 1431.265 kb on + strand, within QEN71_RS35880at 1431.319 kb on + strand, within QEN71_RS35880at 1431.319 kb on + strand, within QEN71_RS35880at 1431.320 kb on - strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.348 kb on + strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.349 kb on - strand, within QEN71_RS35880at 1431.351 kb on - strand, within QEN71_RS35880at 1431.393 kb on + strand, within QEN71_RS35880at 1431.393 kb on + strand, within QEN71_RS35880at 1431.394 kb on - strand, within QEN71_RS35880at 1431.606 kb on + strand, within QEN71_RS35880at 1431.606 kb on + strand, within QEN71_RS35880at 1431.606 kb on + strand, within QEN71_RS35880at 1431.606 kb on + strand, within QEN71_RS35880at 1431.607 kb on - strand, within QEN71_RS35880at 1431.608 kb on + strand, within QEN71_RS35880at 1431.608 kb on + strand, within QEN71_RS35880at 1431.609 kb on - strand, within QEN71_RS35880at 1431.609 kb on - strand, within QEN71_RS35880at 1431.609 kb on - strand, within QEN71_RS35880at 1431.609 kb on - strand, within QEN71_RS35880at 1431.609 kb on - strand, within QEN71_RS35880at 1431.609 kb on - strand, within QEN71_RS35880at 1431.609 kb on - strand, within QEN71_RS35880at 1431.614 kb on + strand, within QEN71_RS35880at 1431.707 kb on + strand, within QEN71_RS35880at 1431.707 kb on + strand, within QEN71_RS35880at 1431.707 kb on + strand, within QEN71_RS35880at 1431.708 kb on - strand, within QEN71_RS35880at 1431.708 kb on - strand, within QEN71_RS35880at 1431.708 kb on - strand, within QEN71_RS35880at 1431.708 kb on - strand, within QEN71_RS35880at 1431.783 kb on - strandat 1431.845 kb on + strandat 1431.845 kb on + strandat 1431.845 kb on + strandat 1431.845 kb on + strandat 1431.846 kb on - strandat 1431.846 kb on - strandat 1431.846 kb on - strandat 1431.846 kb on - strandat 1431.851 kb on + strandat 1431.852 kb on - strandat 1432.061 kb on + strand, within QEN71_RS35885at 1432.061 kb on + strand, within QEN71_RS35885at 1432.061 kb on + strand, within QEN71_RS35885at 1432.061 kb on + strand, within QEN71_RS35885at 1432.062 kb on - strand, within QEN71_RS35885at 1432.062 kb on - strand, within QEN71_RS35885at 1432.126 kb on + strand, within QEN71_RS35885at 1432.185 kb on - strand, within QEN71_RS35885at 1432.185 kb on - strand, within QEN71_RS35885at 1432.298 kb on + strandat 1432.298 kb on + strandat 1432.341 kb on + strandat 1432.341 kb on + strandat 1432.341 kb on + strandat 1432.341 kb on + strandat 1432.341 kb on + strandat 1432.341 kb on + strandat 1432.341 kb on + strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.342 kb on - strandat 1432.349 kb on + strandat 1432.349 kb on + strandat 1432.350 kb on - strandat 1432.350 kb on - strandat 1432.585 kb on + strand, within QEN71_RS35890at 1432.586 kb on - strand, within QEN71_RS35890at 1432.777 kb on + strand, within QEN71_RS35890at 1432.778 kb on - strand, within QEN71_RS35890at 1432.911 kb on - strand, within QEN71_RS35890at 1432.911 kb on - strand, within QEN71_RS35890at 1433.119 kb on + strand, within QEN71_RS35890at 1433.120 kb on - strand, within QEN71_RS35890at 1433.120 kb on - strand, within QEN71_RS35890at 1433.125 kb on + strand, within QEN71_RS35890at 1433.125 kb on + strand, within QEN71_RS35890at 1433.125 kb on + strand, within QEN71_RS35890at 1433.125 kb on + strand, within QEN71_RS35890

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,430,933 + QEN71_RS35880 0.13 -1.1
1,430,933 + QEN71_RS35880 0.13 +1.1
1,430,933 + QEN71_RS35880 0.13 -0.3
1,430,933 + QEN71_RS35880 0.13 -0.9
1,430,934 - QEN71_RS35880 0.13 +0.1
1,430,934 - QEN71_RS35880 0.13 -0.1
1,430,934 - QEN71_RS35880 0.13 -1.1
1,430,934 - QEN71_RS35880 0.13 +0.6
1,430,934 - QEN71_RS35880 0.13 -0.6
1,430,934 - QEN71_RS35880 0.13 -0.7
1,431,005 + QEN71_RS35880 0.20 +1.0
1,431,005 + QEN71_RS35880 0.20 +0.4
1,431,005 + QEN71_RS35880 0.20 -4.7
1,431,006 - QEN71_RS35880 0.20 -0.0
1,431,006 - QEN71_RS35880 0.20 -0.9
1,431,006 - QEN71_RS35880 0.20 -1.2
1,431,006 - QEN71_RS35880 0.20 +0.6
1,431,006 - QEN71_RS35880 0.20 +1.2
1,431,006 - QEN71_RS35880 0.20 -0.0
1,431,006 - QEN71_RS35880 0.20 -0.8
1,431,006 - QEN71_RS35880 0.20 +0.6
1,431,081 + QEN71_RS35880 0.27 +2.2
1,431,156 + QEN71_RS35880 0.34 +0.0
1,431,187 + QEN71_RS35880 0.37 -0.3
1,431,188 - QEN71_RS35880 0.38 -0.0
1,431,206 + QEN71_RS35880 0.39 +0.4
1,431,207 - QEN71_RS35880 0.39 +0.4
1,431,207 - QEN71_RS35880 0.39 +0.1
1,431,207 - QEN71_RS35880 0.39 -0.7
1,431,207 - QEN71_RS35880 0.39 +3.3
1,431,207 - QEN71_RS35880 0.39 +0.4
1,431,265 + QEN71_RS35880 0.45 -0.7
1,431,265 + QEN71_RS35880 0.45 -0.0
1,431,265 + QEN71_RS35880 0.45 -0.1
1,431,265 + QEN71_RS35880 0.45 +2.0
1,431,319 + QEN71_RS35880 0.50 -0.9
1,431,319 + QEN71_RS35880 0.50 -0.7
1,431,320 - QEN71_RS35880 0.50 +0.6
1,431,348 + QEN71_RS35880 0.53 +0.5
1,431,348 + QEN71_RS35880 0.53 -0.8
1,431,348 + QEN71_RS35880 0.53 -0.2
1,431,348 + QEN71_RS35880 0.53 +0.7
1,431,348 + QEN71_RS35880 0.53 -0.9
1,431,348 + QEN71_RS35880 0.53 -2.4
1,431,348 + QEN71_RS35880 0.53 +0.1
1,431,348 + QEN71_RS35880 0.53 +0.2
1,431,349 - QEN71_RS35880 0.53 +1.3
1,431,349 - QEN71_RS35880 0.53 -1.2
1,431,349 - QEN71_RS35880 0.53 -1.9
1,431,349 - QEN71_RS35880 0.53 -0.0
1,431,349 - QEN71_RS35880 0.53 +1.1
1,431,349 - QEN71_RS35880 0.53 -1.0
1,431,349 - QEN71_RS35880 0.53 +0.6
1,431,349 - QEN71_RS35880 0.53 -0.4
1,431,351 - QEN71_RS35880 0.53 -0.6
1,431,393 + QEN71_RS35880 0.57 -0.6
1,431,393 + QEN71_RS35880 0.57 +0.5
1,431,394 - QEN71_RS35880 0.57 +1.1
1,431,606 + QEN71_RS35880 0.78 -0.4
1,431,606 + QEN71_RS35880 0.78 +0.9
1,431,606 + QEN71_RS35880 0.78 -0.9
1,431,606 + QEN71_RS35880 0.78 +0.1
1,431,607 - QEN71_RS35880 0.78 -0.4
1,431,608 + QEN71_RS35880 0.78 -1.0
1,431,608 + QEN71_RS35880 0.78 +0.1
1,431,609 - QEN71_RS35880 0.78 +0.3
1,431,609 - QEN71_RS35880 0.78 -0.9
1,431,609 - QEN71_RS35880 0.78 +1.0
1,431,609 - QEN71_RS35880 0.78 -0.2
1,431,609 - QEN71_RS35880 0.78 -0.5
1,431,609 - QEN71_RS35880 0.78 +0.0
1,431,609 - QEN71_RS35880 0.78 -1.5
1,431,614 + QEN71_RS35880 0.79 -0.2
1,431,707 + QEN71_RS35880 0.88 +0.6
1,431,707 + QEN71_RS35880 0.88 -0.2
1,431,707 + QEN71_RS35880 0.88 -1.3
1,431,708 - QEN71_RS35880 0.88 +0.6
1,431,708 - QEN71_RS35880 0.88 -0.5
1,431,708 - QEN71_RS35880 0.88 -0.2
1,431,708 - QEN71_RS35880 0.88 -0.8
1,431,783 - +0.2
1,431,845 + -0.5
1,431,845 + -0.1
1,431,845 + -0.6
1,431,845 + -0.6
1,431,846 - +0.5
1,431,846 - +0.6
1,431,846 - -0.6
1,431,846 - +0.8
1,431,851 + +0.2
1,431,852 - -0.4
1,432,061 + QEN71_RS35885 0.53 -0.6
1,432,061 + QEN71_RS35885 0.53 -0.2
1,432,061 + QEN71_RS35885 0.53 +3.1
1,432,061 + QEN71_RS35885 0.53 -0.9
1,432,062 - QEN71_RS35885 0.54 -0.2
1,432,062 - QEN71_RS35885 0.54 -0.0
1,432,126 + QEN71_RS35885 0.69 -0.2
1,432,185 - QEN71_RS35885 0.82 -1.0
1,432,185 - QEN71_RS35885 0.82 -0.6
1,432,298 + +0.3
1,432,298 + -0.7
1,432,341 + -0.2
1,432,341 + -1.0
1,432,341 + +1.0
1,432,341 + -0.5
1,432,341 + -1.2
1,432,341 + -0.7
1,432,341 + -1.2
1,432,342 - -1.7
1,432,342 - +2.3
1,432,342 - +0.7
1,432,342 - +0.5
1,432,342 - -0.9
1,432,342 - -0.3
1,432,342 - +0.3
1,432,342 - +0.2
1,432,342 - -0.4
1,432,342 - -0.8
1,432,342 - +1.3
1,432,349 + +0.1
1,432,349 + -0.4
1,432,350 - +0.5
1,432,350 - -0.0
1,432,585 + QEN71_RS35890 0.13 -0.9
1,432,586 - QEN71_RS35890 0.13 +0.4
1,432,777 + QEN71_RS35890 0.28 +1.0
1,432,778 - QEN71_RS35890 0.28 -2.4
1,432,911 - QEN71_RS35890 0.39 -1.1
1,432,911 - QEN71_RS35890 0.39 +1.4
1,433,119 + QEN71_RS35890 0.55 +0.9
1,433,120 - QEN71_RS35890 0.55 +0.1
1,433,120 - QEN71_RS35890 0.55 +0.5
1,433,125 + QEN71_RS35890 0.56 -0.6
1,433,125 + QEN71_RS35890 0.56 -2.0
1,433,125 + QEN71_RS35890 0.56 -0.4
1,433,125 + QEN71_RS35890 0.56 +0.2

Or see this region's nucleotide sequence