Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30790 and QEN71_RS30795 are separated by 31 nucleotides QEN71_RS30795 and QEN71_RS30800 are separated by 233 nucleotides QEN71_RS30800 and QEN71_RS30805 are separated by 350 nucleotides
QEN71_RS30790: QEN71_RS30790 - potassium channel family protein, at 249,256 to 249,945
_RS30790
QEN71_RS30795: QEN71_RS30795 - porin, at 249,977 to 251,155
_RS30795
QEN71_RS30800: QEN71_RS30800 - hypothetical protein, at 251,389 to 251,706
_RS30800
QEN71_RS30805: QEN71_RS30805 - hypothetical protein, at 252,057 to 252,863
_RS30805
Position (kb) 249
250
251
252 Strain fitness (log2 ratio) -2
-1
0
1
2 at 248.982 kb on - strand at 248.982 kb on - strand at 248.987 kb on - strand at 249.013 kb on + strand at 249.013 kb on + strand at 249.046 kb on + strand at 249.141 kb on + strand at 249.141 kb on + strand at 249.142 kb on - strand at 249.142 kb on - strand at 249.142 kb on - strand at 249.230 kb on + strand at 249.231 kb on - strand at 249.231 kb on - strand at 249.231 kb on - strand at 249.233 kb on - strand at 249.233 kb on - strand at 249.233 kb on - strand at 249.238 kb on + strand at 249.327 kb on - strand, within QEN71_RS30790 at 249.402 kb on + strand, within QEN71_RS30790 at 249.403 kb on - strand, within QEN71_RS30790 at 249.403 kb on - strand, within QEN71_RS30790 at 249.403 kb on - strand, within QEN71_RS30790 at 249.565 kb on + strand, within QEN71_RS30790 at 249.566 kb on - strand, within QEN71_RS30790 at 249.584 kb on - strand, within QEN71_RS30790 at 249.614 kb on + strand, within QEN71_RS30790 at 249.615 kb on - strand, within QEN71_RS30790 at 249.615 kb on - strand, within QEN71_RS30790 at 249.652 kb on + strand, within QEN71_RS30790 at 249.652 kb on + strand, within QEN71_RS30790 at 249.679 kb on + strand, within QEN71_RS30790 at 249.679 kb on + strand, within QEN71_RS30790 at 249.679 kb on + strand, within QEN71_RS30790 at 249.686 kb on - strand, within QEN71_RS30790 at 249.686 kb on - strand, within QEN71_RS30790 at 249.718 kb on + strand, within QEN71_RS30790 at 249.718 kb on + strand, within QEN71_RS30790 at 249.718 kb on + strand, within QEN71_RS30790 at 249.718 kb on + strand, within QEN71_RS30790 at 249.719 kb on - strand, within QEN71_RS30790 at 249.719 kb on - strand, within QEN71_RS30790 at 249.720 kb on + strand, within QEN71_RS30790 at 249.720 kb on + strand, within QEN71_RS30790 at 249.925 kb on + strand at 249.925 kb on + strand at 249.926 kb on - strand at 250.113 kb on + strand, within QEN71_RS30795 at 250.114 kb on - strand, within QEN71_RS30795 at 250.141 kb on - strand, within QEN71_RS30795 at 250.153 kb on + strand, within QEN71_RS30795 at 250.154 kb on - strand, within QEN71_RS30795 at 250.209 kb on + strand, within QEN71_RS30795 at 250.209 kb on + strand, within QEN71_RS30795 at 250.209 kb on + strand, within QEN71_RS30795 at 250.216 kb on - strand, within QEN71_RS30795 at 250.362 kb on + strand, within QEN71_RS30795 at 250.363 kb on - strand, within QEN71_RS30795 at 250.663 kb on - strand, within QEN71_RS30795 at 250.663 kb on - strand, within QEN71_RS30795 at 250.663 kb on - strand, within QEN71_RS30795 at 250.842 kb on + strand, within QEN71_RS30795 at 250.842 kb on + strand, within QEN71_RS30795 at 250.843 kb on - strand, within QEN71_RS30795 at 250.843 kb on - strand, within QEN71_RS30795 at 250.878 kb on + strand, within QEN71_RS30795 at 250.974 kb on + strand, within QEN71_RS30795 at 251.047 kb on - strand at 251.084 kb on - strand at 251.084 kb on - strand at 251.267 kb on + strand at 251.378 kb on + strand at 251.469 kb on - strand, within QEN71_RS30800 at 251.499 kb on - strand, within QEN71_RS30800 at 251.513 kb on + strand, within QEN71_RS30800 at 251.513 kb on + strand, within QEN71_RS30800 at 251.513 kb on + strand, within QEN71_RS30800 at 251.513 kb on + strand, within QEN71_RS30800 at 251.514 kb on - strand, within QEN71_RS30800 at 251.749 kb on + strand at 251.804 kb on + strand at 251.941 kb on - strand at 252.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 248,982 - -0.5 248,982 - -0.5 248,987 - +0.8 249,013 + +1.8 249,013 + -0.4 249,046 + +0.2 249,141 + -1.7 249,141 + -0.3 249,142 - -0.2 249,142 - -0.8 249,142 - -1.4 249,230 + -1.2 249,231 - +0.2 249,231 - -1.1 249,231 - -0.8 249,233 - -0.4 249,233 - +1.6 249,233 - -0.8 249,238 + -0.6 249,327 - QEN71_RS30790 0.10 -0.8 249,402 + QEN71_RS30790 0.21 +1.1 249,403 - QEN71_RS30790 0.21 -0.1 249,403 - QEN71_RS30790 0.21 -0.4 249,403 - QEN71_RS30790 0.21 +0.6 249,565 + QEN71_RS30790 0.45 +0.1 249,566 - QEN71_RS30790 0.45 +0.7 249,584 - QEN71_RS30790 0.48 +0.6 249,614 + QEN71_RS30790 0.52 -1.8 249,615 - QEN71_RS30790 0.52 -0.1 249,615 - QEN71_RS30790 0.52 -1.0 249,652 + QEN71_RS30790 0.57 -1.0 249,652 + QEN71_RS30790 0.57 -0.6 249,679 + QEN71_RS30790 0.61 -0.3 249,679 + QEN71_RS30790 0.61 -0.2 249,679 + QEN71_RS30790 0.61 -1.0 249,686 - QEN71_RS30790 0.62 +0.1 249,686 - QEN71_RS30790 0.62 +0.8 249,718 + QEN71_RS30790 0.67 +0.4 249,718 + QEN71_RS30790 0.67 -0.1 249,718 + QEN71_RS30790 0.67 +0.3 249,718 + QEN71_RS30790 0.67 -0.6 249,719 - QEN71_RS30790 0.67 -0.8 249,719 - QEN71_RS30790 0.67 -0.7 249,720 + QEN71_RS30790 0.67 -0.9 249,720 + QEN71_RS30790 0.67 -0.5 249,925 + -1.1 249,925 + -0.5 249,926 - +0.5 250,113 + QEN71_RS30795 0.12 +0.8 250,114 - QEN71_RS30795 0.12 +1.4 250,141 - QEN71_RS30795 0.14 -2.1 250,153 + QEN71_RS30795 0.15 -0.9 250,154 - QEN71_RS30795 0.15 -0.2 250,209 + QEN71_RS30795 0.20 -0.8 250,209 + QEN71_RS30795 0.20 +0.1 250,209 + QEN71_RS30795 0.20 +0.3 250,216 - QEN71_RS30795 0.20 +0.9 250,362 + QEN71_RS30795 0.33 -0.5 250,363 - QEN71_RS30795 0.33 -0.2 250,663 - QEN71_RS30795 0.58 -0.8 250,663 - QEN71_RS30795 0.58 -0.9 250,663 - QEN71_RS30795 0.58 +0.7 250,842 + QEN71_RS30795 0.73 -0.5 250,842 + QEN71_RS30795 0.73 +0.2 250,843 - QEN71_RS30795 0.73 -2.0 250,843 - QEN71_RS30795 0.73 +0.7 250,878 + QEN71_RS30795 0.76 +0.9 250,974 + QEN71_RS30795 0.85 +0.5 251,047 - -0.1 251,084 - +0.4 251,084 - +0.5 251,267 + -0.7 251,378 + +0.1 251,469 - QEN71_RS30800 0.25 -0.7 251,499 - QEN71_RS30800 0.35 +1.4 251,513 + QEN71_RS30800 0.39 -1.6 251,513 + QEN71_RS30800 0.39 +0.1 251,513 + QEN71_RS30800 0.39 -0.4 251,513 + QEN71_RS30800 0.39 +0.4 251,514 - QEN71_RS30800 0.39 -0.4 251,749 + -0.4 251,804 + -0.8 251,941 - -0.5 252,109 + -1.1
Or see this region's nucleotide sequence