Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27920

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27910 and QEN71_RS27915 are separated by 71 nucleotidesQEN71_RS27915 and QEN71_RS27920 overlap by 4 nucleotidesQEN71_RS27920 and QEN71_RS27925 are separated by 86 nucleotides QEN71_RS27910: QEN71_RS27910 - outer membrane lipid asymmetry maintenance protein MlaD, at 6,207,228 to 6,207,782 _RS27910 QEN71_RS27915: QEN71_RS27915 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 6,207,854 to 6,208,621 _RS27915 QEN71_RS27920: QEN71_RS27920 - ABC transporter ATP-binding protein, at 6,208,618 to 6,209,439 _RS27920 QEN71_RS27925: QEN71_RS27925 - thiamine phosphate synthase, at 6,209,526 to 6,210,641 _RS27925 Position (kb) 6208 6209 6210Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6207.638 kb on + strand, within QEN71_RS27910at 6207.664 kb on + strand, within QEN71_RS27910at 6207.665 kb on - strand, within QEN71_RS27910at 6207.802 kb on + strandat 6207.802 kb on + strandat 6207.802 kb on + strandat 6207.803 kb on - strandat 6207.803 kb on - strandat 6207.803 kb on - strandat 6207.839 kb on + strandat 6207.839 kb on + strandat 6207.839 kb on + strandat 6207.839 kb on + strandat 6207.839 kb on + strandat 6207.839 kb on + strandat 6207.839 kb on + strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.840 kb on - strandat 6207.855 kb on + strandat 6207.856 kb on - strandat 6207.856 kb on - strandat 6207.912 kb on + strandat 6207.978 kb on + strand, within QEN71_RS27915at 6208.122 kb on + strand, within QEN71_RS27915at 6208.122 kb on + strand, within QEN71_RS27915at 6208.246 kb on + strand, within QEN71_RS27915at 6208.246 kb on + strand, within QEN71_RS27915at 6208.407 kb on + strand, within QEN71_RS27915at 6208.407 kb on + strand, within QEN71_RS27915at 6208.407 kb on + strand, within QEN71_RS27915at 6208.473 kb on + strand, within QEN71_RS27915at 6208.473 kb on + strand, within QEN71_RS27915at 6208.473 kb on + strand, within QEN71_RS27915at 6208.473 kb on + strand, within QEN71_RS27915at 6208.793 kb on + strand, within QEN71_RS27920at 6208.793 kb on + strand, within QEN71_RS27920at 6208.793 kb on + strand, within QEN71_RS27920at 6208.799 kb on + strand, within QEN71_RS27920at 6208.799 kb on + strand, within QEN71_RS27920at 6208.799 kb on + strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.800 kb on - strand, within QEN71_RS27920at 6208.866 kb on + strand, within QEN71_RS27920at 6208.866 kb on + strand, within QEN71_RS27920at 6208.867 kb on - strand, within QEN71_RS27920at 6208.887 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.937 kb on + strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6208.938 kb on - strand, within QEN71_RS27920at 6209.100 kb on + strand, within QEN71_RS27920at 6209.101 kb on - strand, within QEN71_RS27920at 6209.101 kb on - strand, within QEN71_RS27920at 6209.198 kb on + strand, within QEN71_RS27920at 6209.458 kb on - strandat 6209.474 kb on + strandat 6209.474 kb on + strandat 6209.475 kb on - strandat 6209.475 kb on - strandat 6209.475 kb on - strandat 6209.475 kb on - strandat 6209.476 kb on + strandat 6209.476 kb on + strandat 6209.477 kb on - strandat 6209.511 kb on - strandat 6209.547 kb on + strandat 6209.547 kb on + strandat 6209.547 kb on + strandat 6209.547 kb on + strandat 6209.548 kb on - strandat 6209.548 kb on - strandat 6209.557 kb on - strandat 6209.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,207,638 + QEN71_RS27910 0.74 -0.5
6,207,664 + QEN71_RS27910 0.79 -1.0
6,207,665 - QEN71_RS27910 0.79 -0.5
6,207,802 + -0.2
6,207,802 + -1.2
6,207,802 + -2.6
6,207,803 - -3.9
6,207,803 - -3.1
6,207,803 - -1.3
6,207,839 + -0.5
6,207,839 + -0.2
6,207,839 + -0.2
6,207,839 + -1.0
6,207,839 + -0.8
6,207,839 + -2.1
6,207,839 + -1.8
6,207,840 - -3.1
6,207,840 - -1.0
6,207,840 - -0.8
6,207,840 - -1.0
6,207,840 - -3.3
6,207,840 - -2.3
6,207,840 - -3.4
6,207,840 - -1.0
6,207,840 - -3.3
6,207,855 + -2.8
6,207,856 - -3.0
6,207,856 - -2.2
6,207,912 + -1.2
6,207,978 + QEN71_RS27915 0.16 -0.2
6,208,122 + QEN71_RS27915 0.35 -0.5
6,208,122 + QEN71_RS27915 0.35 -2.2
6,208,246 + QEN71_RS27915 0.51 -0.8
6,208,246 + QEN71_RS27915 0.51 -0.2
6,208,407 + QEN71_RS27915 0.72 -2.4
6,208,407 + QEN71_RS27915 0.72 -2.4
6,208,407 + QEN71_RS27915 0.72 -2.0
6,208,473 + QEN71_RS27915 0.81 -1.2
6,208,473 + QEN71_RS27915 0.81 -0.2
6,208,473 + QEN71_RS27915 0.81 -2.6
6,208,473 + QEN71_RS27915 0.81 -1.2
6,208,793 + QEN71_RS27920 0.21 -1.5
6,208,793 + QEN71_RS27920 0.21 -0.2
6,208,793 + QEN71_RS27920 0.21 -0.2
6,208,799 + QEN71_RS27920 0.22 -2.0
6,208,799 + QEN71_RS27920 0.22 -0.2
6,208,799 + QEN71_RS27920 0.22 -1.4
6,208,800 - QEN71_RS27920 0.22 -0.2
6,208,800 - QEN71_RS27920 0.22 -0.2
6,208,800 - QEN71_RS27920 0.22 -0.8
6,208,800 - QEN71_RS27920 0.22 -0.8
6,208,866 + QEN71_RS27920 0.30 -1.9
6,208,866 + QEN71_RS27920 0.30 -0.8
6,208,867 - QEN71_RS27920 0.30 -0.5
6,208,887 + QEN71_RS27920 0.33 -2.0
6,208,937 + QEN71_RS27920 0.39 -0.2
6,208,937 + QEN71_RS27920 0.39 -1.2
6,208,937 + QEN71_RS27920 0.39 -1.4
6,208,937 + QEN71_RS27920 0.39 -1.2
6,208,937 + QEN71_RS27920 0.39 -0.2
6,208,937 + QEN71_RS27920 0.39 -1.0
6,208,937 + QEN71_RS27920 0.39 -2.3
6,208,937 + QEN71_RS27920 0.39 -0.8
6,208,937 + QEN71_RS27920 0.39 -0.2
6,208,938 - QEN71_RS27920 0.39 -1.5
6,208,938 - QEN71_RS27920 0.39 -1.5
6,208,938 - QEN71_RS27920 0.39 -0.8
6,208,938 - QEN71_RS27920 0.39 -2.3
6,208,938 - QEN71_RS27920 0.39 -0.2
6,208,938 - QEN71_RS27920 0.39 -0.5
6,208,938 - QEN71_RS27920 0.39 -1.0
6,208,938 - QEN71_RS27920 0.39 -1.4
6,208,938 - QEN71_RS27920 0.39 -1.0
6,209,100 + QEN71_RS27920 0.59 -0.5
6,209,101 - QEN71_RS27920 0.59 -1.6
6,209,101 - QEN71_RS27920 0.59 -0.2
6,209,198 + QEN71_RS27920 0.71 -1.4
6,209,458 - +0.4
6,209,474 + -2.0
6,209,474 + -1.6
6,209,475 - +0.9
6,209,475 - -1.4
6,209,475 - -0.6
6,209,475 - -0.1
6,209,476 + +1.5
6,209,476 + -1.4
6,209,477 - -0.5
6,209,511 - -0.6
6,209,547 + -0.8
6,209,547 + -0.1
6,209,547 + +0.6
6,209,547 + +1.1
6,209,548 - -0.0
6,209,548 - -1.3
6,209,557 - +0.1
6,209,568 - +0.9

Or see this region's nucleotide sequence