Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS27910 and QEN71_RS27915 are separated by 71 nucleotides QEN71_RS27915 and QEN71_RS27920 overlap by 4 nucleotides QEN71_RS27920 and QEN71_RS27925 are separated by 86 nucleotides
QEN71_RS27910: QEN71_RS27910 - outer membrane lipid asymmetry maintenance protein MlaD, at 6,207,228 to 6,207,782
_RS27910
QEN71_RS27915: QEN71_RS27915 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 6,207,854 to 6,208,621
_RS27915
QEN71_RS27920: QEN71_RS27920 - ABC transporter ATP-binding protein, at 6,208,618 to 6,209,439
_RS27920
QEN71_RS27925: QEN71_RS27925 - thiamine phosphate synthase, at 6,209,526 to 6,210,641
_RS27925
Position (kb)
6208
6209
6210 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 6207.638 kb on + strand, within QEN71_RS27910 at 6207.664 kb on + strand, within QEN71_RS27910 at 6207.665 kb on - strand, within QEN71_RS27910 at 6207.802 kb on + strand at 6207.802 kb on + strand at 6207.802 kb on + strand at 6207.803 kb on - strand at 6207.803 kb on - strand at 6207.803 kb on - strand at 6207.839 kb on + strand at 6207.839 kb on + strand at 6207.839 kb on + strand at 6207.839 kb on + strand at 6207.839 kb on + strand at 6207.839 kb on + strand at 6207.839 kb on + strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.840 kb on - strand at 6207.855 kb on + strand at 6207.856 kb on - strand at 6207.856 kb on - strand at 6207.912 kb on + strand at 6207.978 kb on + strand, within QEN71_RS27915 at 6208.122 kb on + strand, within QEN71_RS27915 at 6208.122 kb on + strand, within QEN71_RS27915 at 6208.246 kb on + strand, within QEN71_RS27915 at 6208.246 kb on + strand, within QEN71_RS27915 at 6208.407 kb on + strand, within QEN71_RS27915 at 6208.407 kb on + strand, within QEN71_RS27915 at 6208.407 kb on + strand, within QEN71_RS27915 at 6208.473 kb on + strand, within QEN71_RS27915 at 6208.473 kb on + strand, within QEN71_RS27915 at 6208.473 kb on + strand, within QEN71_RS27915 at 6208.473 kb on + strand, within QEN71_RS27915 at 6208.793 kb on + strand, within QEN71_RS27920 at 6208.793 kb on + strand, within QEN71_RS27920 at 6208.793 kb on + strand, within QEN71_RS27920 at 6208.799 kb on + strand, within QEN71_RS27920 at 6208.799 kb on + strand, within QEN71_RS27920 at 6208.799 kb on + strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.866 kb on + strand, within QEN71_RS27920 at 6208.866 kb on + strand, within QEN71_RS27920 at 6208.867 kb on - strand, within QEN71_RS27920 at 6208.887 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6209.100 kb on + strand, within QEN71_RS27920 at 6209.101 kb on - strand, within QEN71_RS27920 at 6209.101 kb on - strand, within QEN71_RS27920 at 6209.198 kb on + strand, within QEN71_RS27920 at 6209.458 kb on - strand at 6209.474 kb on + strand at 6209.474 kb on + strand at 6209.475 kb on - strand at 6209.475 kb on - strand at 6209.475 kb on - strand at 6209.475 kb on - strand at 6209.476 kb on + strand at 6209.476 kb on + strand at 6209.477 kb on - strand at 6209.511 kb on - strand at 6209.547 kb on + strand at 6209.547 kb on + strand at 6209.547 kb on + strand at 6209.547 kb on + strand at 6209.548 kb on - strand at 6209.548 kb on - strand at 6209.557 kb on - strand at 6209.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 6,207,638 + QEN71_RS27910 0.74 -0.5 6,207,664 + QEN71_RS27910 0.79 -1.0 6,207,665 - QEN71_RS27910 0.79 -0.5 6,207,802 + -0.2 6,207,802 + -1.2 6,207,802 + -2.6 6,207,803 - -3.9 6,207,803 - -3.1 6,207,803 - -1.3 6,207,839 + -0.5 6,207,839 + -0.2 6,207,839 + -0.2 6,207,839 + -1.0 6,207,839 + -0.8 6,207,839 + -2.1 6,207,839 + -1.8 6,207,840 - -3.1 6,207,840 - -1.0 6,207,840 - -0.8 6,207,840 - -1.0 6,207,840 - -3.3 6,207,840 - -2.3 6,207,840 - -3.4 6,207,840 - -1.0 6,207,840 - -3.3 6,207,855 + -2.8 6,207,856 - -3.0 6,207,856 - -2.2 6,207,912 + -1.2 6,207,978 + QEN71_RS27915 0.16 -0.2 6,208,122 + QEN71_RS27915 0.35 -0.5 6,208,122 + QEN71_RS27915 0.35 -2.2 6,208,246 + QEN71_RS27915 0.51 -0.8 6,208,246 + QEN71_RS27915 0.51 -0.2 6,208,407 + QEN71_RS27915 0.72 -2.4 6,208,407 + QEN71_RS27915 0.72 -2.4 6,208,407 + QEN71_RS27915 0.72 -2.0 6,208,473 + QEN71_RS27915 0.81 -1.2 6,208,473 + QEN71_RS27915 0.81 -0.2 6,208,473 + QEN71_RS27915 0.81 -2.6 6,208,473 + QEN71_RS27915 0.81 -1.2 6,208,793 + QEN71_RS27920 0.21 -1.5 6,208,793 + QEN71_RS27920 0.21 -0.2 6,208,793 + QEN71_RS27920 0.21 -0.2 6,208,799 + QEN71_RS27920 0.22 -2.0 6,208,799 + QEN71_RS27920 0.22 -0.2 6,208,799 + QEN71_RS27920 0.22 -1.4 6,208,800 - QEN71_RS27920 0.22 -0.2 6,208,800 - QEN71_RS27920 0.22 -0.2 6,208,800 - QEN71_RS27920 0.22 -0.8 6,208,800 - QEN71_RS27920 0.22 -0.8 6,208,866 + QEN71_RS27920 0.30 -1.9 6,208,866 + QEN71_RS27920 0.30 -0.8 6,208,867 - QEN71_RS27920 0.30 -0.5 6,208,887 + QEN71_RS27920 0.33 -2.0 6,208,937 + QEN71_RS27920 0.39 -0.2 6,208,937 + QEN71_RS27920 0.39 -1.2 6,208,937 + QEN71_RS27920 0.39 -1.4 6,208,937 + QEN71_RS27920 0.39 -1.2 6,208,937 + QEN71_RS27920 0.39 -0.2 6,208,937 + QEN71_RS27920 0.39 -1.0 6,208,937 + QEN71_RS27920 0.39 -2.3 6,208,937 + QEN71_RS27920 0.39 -0.8 6,208,937 + QEN71_RS27920 0.39 -0.2 6,208,938 - QEN71_RS27920 0.39 -1.5 6,208,938 - QEN71_RS27920 0.39 -1.5 6,208,938 - QEN71_RS27920 0.39 -0.8 6,208,938 - QEN71_RS27920 0.39 -2.3 6,208,938 - QEN71_RS27920 0.39 -0.2 6,208,938 - QEN71_RS27920 0.39 -0.5 6,208,938 - QEN71_RS27920 0.39 -1.0 6,208,938 - QEN71_RS27920 0.39 -1.4 6,208,938 - QEN71_RS27920 0.39 -1.0 6,209,100 + QEN71_RS27920 0.59 -0.5 6,209,101 - QEN71_RS27920 0.59 -1.6 6,209,101 - QEN71_RS27920 0.59 -0.2 6,209,198 + QEN71_RS27920 0.71 -1.4 6,209,458 - +0.4 6,209,474 + -2.0 6,209,474 + -1.6 6,209,475 - +0.9 6,209,475 - -1.4 6,209,475 - -0.6 6,209,475 - -0.1 6,209,476 + +1.5 6,209,476 + -1.4 6,209,477 - -0.5 6,209,511 - -0.6 6,209,547 + -0.8 6,209,547 + -0.1 6,209,547 + +0.6 6,209,547 + +1.1 6,209,548 - -0.0 6,209,548 - -1.3 6,209,557 - +0.1 6,209,568 - +0.9
Or see this region's nucleotide sequence