Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS27135 and QEN71_RS27140 are separated by 140 nucleotides QEN71_RS27140 and QEN71_RS27145 overlap by 4 nucleotides
QEN71_RS27135: QEN71_RS27135 - RNB domain-containing ribonuclease, at 6,050,958 to 6,053,048
_RS27135
QEN71_RS27140: QEN71_RS27140 - YqiA/YcfP family alpha/beta fold hydrolase, at 6,053,189 to 6,053,791
_RS27140
QEN71_RS27145: QEN71_RS27145 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 6,053,788 to 6,055,197
_RS27145
Position (kb)
6053
6054 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 6053.054 kb on - strand at 6053.259 kb on + strand, within QEN71_RS27140 at 6053.259 kb on + strand, within QEN71_RS27140 at 6053.259 kb on + strand, within QEN71_RS27140 at 6053.259 kb on + strand, within QEN71_RS27140 at 6053.259 kb on + strand, within QEN71_RS27140 at 6053.259 kb on + strand, within QEN71_RS27140 at 6053.260 kb on - strand, within QEN71_RS27140 at 6053.260 kb on - strand, within QEN71_RS27140 at 6053.260 kb on - strand, within QEN71_RS27140 at 6053.260 kb on - strand, within QEN71_RS27140 at 6053.260 kb on - strand, within QEN71_RS27140 at 6053.260 kb on - strand, within QEN71_RS27140 at 6053.260 kb on - strand, within QEN71_RS27140 at 6053.322 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.379 kb on + strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.380 kb on - strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.382 kb on + strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.383 kb on - strand, within QEN71_RS27140 at 6053.414 kb on + strand, within QEN71_RS27140 at 6053.415 kb on - strand, within QEN71_RS27140 at 6053.493 kb on + strand, within QEN71_RS27140 at 6053.493 kb on + strand, within QEN71_RS27140 at 6053.493 kb on + strand, within QEN71_RS27140 at 6053.493 kb on + strand, within QEN71_RS27140 at 6053.493 kb on + strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.494 kb on - strand, within QEN71_RS27140 at 6053.580 kb on + strand, within QEN71_RS27140 at 6053.580 kb on + strand, within QEN71_RS27140 at 6053.781 kb on + strand at 6053.781 kb on + strand at 6053.781 kb on + strand at 6053.782 kb on - strand at 6053.782 kb on - strand at 6053.782 kb on - strand at 6053.782 kb on - strand at 6053.782 kb on - strand at 6053.782 kb on - strand at 6053.782 kb on - strand at 6053.931 kb on + strand, within QEN71_RS27145 at 6053.931 kb on + strand, within QEN71_RS27145 at 6053.932 kb on - strand, within QEN71_RS27145 at 6054.133 kb on - strand, within QEN71_RS27145 at 6054.139 kb on - strand, within QEN71_RS27145 at 6054.139 kb on - strand, within QEN71_RS27145 at 6054.209 kb on + strand, within QEN71_RS27145 at 6054.209 kb on + strand, within QEN71_RS27145 at 6054.209 kb on + strand, within QEN71_RS27145 at 6054.210 kb on - strand, within QEN71_RS27145 at 6054.210 kb on - strand, within QEN71_RS27145 at 6054.210 kb on - strand, within QEN71_RS27145 at 6054.210 kb on - strand, within QEN71_RS27145 at 6054.309 kb on + strand, within QEN71_RS27145 at 6054.309 kb on + strand, within QEN71_RS27145 at 6054.310 kb on - strand, within QEN71_RS27145 at 6054.404 kb on + strand, within QEN71_RS27145 at 6054.404 kb on + strand, within QEN71_RS27145 at 6054.404 kb on + strand, within QEN71_RS27145 at 6054.404 kb on + strand, within QEN71_RS27145 at 6054.405 kb on - strand, within QEN71_RS27145 at 6054.405 kb on - strand, within QEN71_RS27145 at 6054.405 kb on - strand, within QEN71_RS27145 at 6054.570 kb on + strand, within QEN71_RS27145 at 6054.671 kb on + strand, within QEN71_RS27145 at 6054.713 kb on + strand, within QEN71_RS27145 at 6054.714 kb on - strand, within QEN71_RS27145 at 6054.714 kb on - strand, within QEN71_RS27145
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 6,053,054 - -2.7 6,053,259 + QEN71_RS27140 0.12 -1.5 6,053,259 + QEN71_RS27140 0.12 -1.9 6,053,259 + QEN71_RS27140 0.12 -1.0 6,053,259 + QEN71_RS27140 0.12 -3.1 6,053,259 + QEN71_RS27140 0.12 -3.6 6,053,259 + QEN71_RS27140 0.12 -1.9 6,053,260 - QEN71_RS27140 0.12 +1.4 6,053,260 - QEN71_RS27140 0.12 +2.1 6,053,260 - QEN71_RS27140 0.12 -0.5 6,053,260 - QEN71_RS27140 0.12 -1.2 6,053,260 - QEN71_RS27140 0.12 +0.3 6,053,260 - QEN71_RS27140 0.12 -1.8 6,053,260 - QEN71_RS27140 0.12 +0.5 6,053,322 + QEN71_RS27140 0.22 -2.4 6,053,379 + QEN71_RS27140 0.32 -3.0 6,053,379 + QEN71_RS27140 0.32 -1.9 6,053,379 + QEN71_RS27140 0.32 -1.1 6,053,379 + QEN71_RS27140 0.32 -3.4 6,053,379 + QEN71_RS27140 0.32 -1.4 6,053,379 + QEN71_RS27140 0.32 -1.6 6,053,379 + QEN71_RS27140 0.32 -0.8 6,053,379 + QEN71_RS27140 0.32 -2.2 6,053,379 + QEN71_RS27140 0.32 -2.6 6,053,379 + QEN71_RS27140 0.32 -4.4 6,053,379 + QEN71_RS27140 0.32 -0.8 6,053,380 - QEN71_RS27140 0.32 +0.2 6,053,380 - QEN71_RS27140 0.32 -1.8 6,053,380 - QEN71_RS27140 0.32 +0.5 6,053,380 - QEN71_RS27140 0.32 -0.1 6,053,380 - QEN71_RS27140 0.32 -0.5 6,053,380 - QEN71_RS27140 0.32 -0.1 6,053,380 - QEN71_RS27140 0.32 +0.0 6,053,380 - QEN71_RS27140 0.32 +0.1 6,053,380 - QEN71_RS27140 0.32 +0.7 6,053,380 - QEN71_RS27140 0.32 -2.1 6,053,380 - QEN71_RS27140 0.32 -0.3 6,053,380 - QEN71_RS27140 0.32 -0.4 6,053,380 - QEN71_RS27140 0.32 -0.8 6,053,382 + QEN71_RS27140 0.32 -0.7 6,053,382 + QEN71_RS27140 0.32 -2.9 6,053,382 + QEN71_RS27140 0.32 -0.8 6,053,382 + QEN71_RS27140 0.32 -0.7 6,053,382 + QEN71_RS27140 0.32 -0.4 6,053,382 + QEN71_RS27140 0.32 -0.5 6,053,382 + QEN71_RS27140 0.32 -0.5 6,053,382 + QEN71_RS27140 0.32 +0.1 6,053,382 + QEN71_RS27140 0.32 -0.1 6,053,382 + QEN71_RS27140 0.32 -1.5 6,053,382 + QEN71_RS27140 0.32 -0.2 6,053,383 - QEN71_RS27140 0.32 -0.5 6,053,383 - QEN71_RS27140 0.32 -2.6 6,053,383 - QEN71_RS27140 0.32 -0.1 6,053,383 - QEN71_RS27140 0.32 -1.1 6,053,383 - QEN71_RS27140 0.32 -1.0 6,053,383 - QEN71_RS27140 0.32 -0.6 6,053,383 - QEN71_RS27140 0.32 -0.4 6,053,383 - QEN71_RS27140 0.32 -0.3 6,053,414 + QEN71_RS27140 0.37 -3.1 6,053,415 - QEN71_RS27140 0.37 -1.3 6,053,493 + QEN71_RS27140 0.50 -1.7 6,053,493 + QEN71_RS27140 0.50 -3.9 6,053,493 + QEN71_RS27140 0.50 -1.9 6,053,493 + QEN71_RS27140 0.50 -3.3 6,053,493 + QEN71_RS27140 0.50 -4.5 6,053,494 - QEN71_RS27140 0.51 -0.5 6,053,494 - QEN71_RS27140 0.51 +0.8 6,053,494 - QEN71_RS27140 0.51 -0.4 6,053,494 - QEN71_RS27140 0.51 +0.4 6,053,494 - QEN71_RS27140 0.51 -0.6 6,053,494 - QEN71_RS27140 0.51 +1.3 6,053,494 - QEN71_RS27140 0.51 +0.6 6,053,494 - QEN71_RS27140 0.51 +0.1 6,053,494 - QEN71_RS27140 0.51 +0.2 6,053,580 + QEN71_RS27140 0.65 +0.8 6,053,580 + QEN71_RS27140 0.65 -1.2 6,053,781 + -3.5 6,053,781 + -2.4 6,053,781 + -3.2 6,053,782 - +0.2 6,053,782 - +1.3 6,053,782 - -0.4 6,053,782 - -0.4 6,053,782 - -0.2 6,053,782 - -0.2 6,053,782 - -0.3 6,053,931 + QEN71_RS27145 0.10 -2.6 6,053,931 + QEN71_RS27145 0.10 -4.1 6,053,932 - QEN71_RS27145 0.10 -1.1 6,054,133 - QEN71_RS27145 0.24 +0.8 6,054,139 - QEN71_RS27145 0.25 -0.2 6,054,139 - QEN71_RS27145 0.25 -0.7 6,054,209 + QEN71_RS27145 0.30 -2.3 6,054,209 + QEN71_RS27145 0.30 -1.4 6,054,209 + QEN71_RS27145 0.30 -1.0 6,054,210 - QEN71_RS27145 0.30 -1.0 6,054,210 - QEN71_RS27145 0.30 -0.7 6,054,210 - QEN71_RS27145 0.30 -0.8 6,054,210 - QEN71_RS27145 0.30 -1.3 6,054,309 + QEN71_RS27145 0.37 -4.6 6,054,309 + QEN71_RS27145 0.37 -1.8 6,054,310 - QEN71_RS27145 0.37 -1.6 6,054,404 + QEN71_RS27145 0.44 -4.1 6,054,404 + QEN71_RS27145 0.44 -3.9 6,054,404 + QEN71_RS27145 0.44 -3.6 6,054,404 + QEN71_RS27145 0.44 -3.5 6,054,405 - QEN71_RS27145 0.44 -1.7 6,054,405 - QEN71_RS27145 0.44 -2.0 6,054,405 - QEN71_RS27145 0.44 -1.6 6,054,570 + QEN71_RS27145 0.55 -1.4 6,054,671 + QEN71_RS27145 0.63 -1.0 6,054,713 + QEN71_RS27145 0.66 -4.5 6,054,714 - QEN71_RS27145 0.66 -3.4 6,054,714 - QEN71_RS27145 0.66 -2.1
Or see this region's nucleotide sequence