Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25435

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25430 and QEN71_RS25435 are separated by 11 nucleotidesQEN71_RS25435 and QEN71_RS25440 are separated by 221 nucleotides QEN71_RS25430: QEN71_RS25430 - glycosyltransferase family 4 protein, at 5,656,617 to 5,657,789 _RS25430 QEN71_RS25435: QEN71_RS25435 - UDP-glucose 4-epimerase GalE, at 5,657,801 to 5,658,823 _RS25435 QEN71_RS25440: QEN71_RS25440 - hypothetical protein, at 5,659,045 to 5,659,488 _RS25440 Position (kb) 5657 5658 5659Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5656.908 kb on + strand, within QEN71_RS25430at 5656.909 kb on - strand, within QEN71_RS25430at 5656.925 kb on + strand, within QEN71_RS25430at 5656.925 kb on + strand, within QEN71_RS25430at 5656.926 kb on - strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.993 kb on - strand, within QEN71_RS25430at 5657.000 kb on + strand, within QEN71_RS25430at 5657.071 kb on + strand, within QEN71_RS25430at 5657.072 kb on - strand, within QEN71_RS25430at 5657.072 kb on - strand, within QEN71_RS25430at 5657.246 kb on - strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.249 kb on - strand, within QEN71_RS25430at 5657.249 kb on - strand, within QEN71_RS25430at 5657.270 kb on + strand, within QEN71_RS25430at 5657.286 kb on + strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.320 kb on - strand, within QEN71_RS25430at 5657.320 kb on - strand, within QEN71_RS25430at 5657.424 kb on + strand, within QEN71_RS25430at 5657.424 kb on + strand, within QEN71_RS25430at 5657.425 kb on - strand, within QEN71_RS25430at 5657.425 kb on - strand, within QEN71_RS25430at 5657.491 kb on - strand, within QEN71_RS25430at 5657.606 kb on - strand, within QEN71_RS25430at 5657.606 kb on - strand, within QEN71_RS25430at 5657.618 kb on + strand, within QEN71_RS25430at 5657.618 kb on + strand, within QEN71_RS25430at 5657.623 kb on + strand, within QEN71_RS25430at 5657.624 kb on - strand, within QEN71_RS25430at 5657.624 kb on - strand, within QEN71_RS25430at 5657.660 kb on + strand, within QEN71_RS25430at 5657.660 kb on + strand, within QEN71_RS25430at 5657.661 kb on - strand, within QEN71_RS25430at 5657.748 kb on + strandat 5657.748 kb on + strandat 5657.779 kb on + strandat 5657.779 kb on + strandat 5657.780 kb on - strandat 5657.788 kb on - strandat 5657.845 kb on + strandat 5657.879 kb on - strandat 5657.885 kb on + strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5658.102 kb on - strand, within QEN71_RS25435at 5658.102 kb on - strand, within QEN71_RS25435at 5658.112 kb on + strand, within QEN71_RS25435at 5658.112 kb on + strand, within QEN71_RS25435at 5658.112 kb on + strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.194 kb on + strand, within QEN71_RS25435at 5658.194 kb on + strand, within QEN71_RS25435at 5658.195 kb on - strand, within QEN71_RS25435at 5658.195 kb on - strand, within QEN71_RS25435at 5658.195 kb on - strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.473 kb on + strand, within QEN71_RS25435at 5658.474 kb on - strand, within QEN71_RS25435at 5658.474 kb on - strand, within QEN71_RS25435at 5658.474 kb on - strand, within QEN71_RS25435at 5658.478 kb on + strand, within QEN71_RS25435at 5658.478 kb on + strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.506 kb on + strand, within QEN71_RS25435at 5658.506 kb on + strand, within QEN71_RS25435at 5658.506 kb on + strand, within QEN71_RS25435at 5658.507 kb on - strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.608 kb on + strand, within QEN71_RS25435at 5658.608 kb on + strand, within QEN71_RS25435at 5658.608 kb on + strand, within QEN71_RS25435at 5658.609 kb on - strand, within QEN71_RS25435at 5658.609 kb on - strand, within QEN71_RS25435at 5658.610 kb on + strand, within QEN71_RS25435at 5658.611 kb on - strand, within QEN71_RS25435at 5658.665 kb on + strand, within QEN71_RS25435at 5658.755 kb on + strandat 5658.821 kb on + strandat 5658.822 kb on - strandat 5658.892 kb on + strandat 5658.892 kb on + strandat 5658.892 kb on + strandat 5658.892 kb on + strandat 5658.892 kb on + strandat 5658.892 kb on + strandat 5658.892 kb on + strandat 5658.893 kb on - strandat 5658.893 kb on - strandat 5658.893 kb on - strandat 5658.893 kb on - strandat 5658.893 kb on - strandat 5658.906 kb on - strandat 5659.207 kb on - strand, within QEN71_RS25440at 5659.269 kb on + strand, within QEN71_RS25440at 5659.270 kb on - strand, within QEN71_RS25440at 5659.273 kb on + strand, within QEN71_RS25440at 5659.273 kb on + strand, within QEN71_RS25440at 5659.274 kb on - strand, within QEN71_RS25440at 5659.274 kb on - strand, within QEN71_RS25440at 5659.294 kb on + strand, within QEN71_RS25440at 5659.294 kb on + strand, within QEN71_RS25440at 5659.294 kb on + strand, within QEN71_RS25440at 5659.294 kb on + strand, within QEN71_RS25440at 5659.294 kb on + strand, within QEN71_RS25440at 5659.294 kb on + strand, within QEN71_RS25440at 5659.295 kb on - strand, within QEN71_RS25440at 5659.295 kb on - strand, within QEN71_RS25440at 5659.295 kb on - strand, within QEN71_RS25440at 5659.416 kb on + strand, within QEN71_RS25440at 5659.416 kb on + strand, within QEN71_RS25440at 5659.417 kb on - strand, within QEN71_RS25440at 5659.417 kb on - strand, within QEN71_RS25440at 5659.417 kb on - strand, within QEN71_RS25440at 5659.417 kb on - strand, within QEN71_RS25440at 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.527 kb on + strandat 5659.528 kb on - strandat 5659.528 kb on - strandat 5659.528 kb on - strandat 5659.570 kb on + strandat 5659.570 kb on + strandat 5659.570 kb on + strandat 5659.570 kb on + strandat 5659.586 kb on + strandat 5659.587 kb on - strandat 5659.612 kb on + strandat 5659.683 kb on + strandat 5659.683 kb on + strandat 5659.683 kb on + strandat 5659.684 kb on - strandat 5659.733 kb on + strandat 5659.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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5,656,908 + QEN71_RS25430 0.25 -1.4
5,656,909 - QEN71_RS25430 0.25 -1.4
5,656,925 + QEN71_RS25430 0.26 -1.6
5,656,925 + QEN71_RS25430 0.26 -0.3
5,656,926 - QEN71_RS25430 0.26 -1.4
5,656,929 + QEN71_RS25430 0.27 -0.3
5,656,929 + QEN71_RS25430 0.27 -3.4
5,656,929 + QEN71_RS25430 0.27 -0.1
5,656,929 + QEN71_RS25430 0.27 -0.1
5,656,929 + QEN71_RS25430 0.27 +0.4
5,656,929 + QEN71_RS25430 0.27 -0.1
5,656,929 + QEN71_RS25430 0.27 -0.3
5,656,930 - QEN71_RS25430 0.27 +1.0
5,656,930 - QEN71_RS25430 0.27 -1.4
5,656,930 - QEN71_RS25430 0.27 -1.0
5,656,930 - QEN71_RS25430 0.27 -0.2
5,656,930 - QEN71_RS25430 0.27 -0.6
5,656,930 - QEN71_RS25430 0.27 -0.3
5,656,993 - QEN71_RS25430 0.32 +0.4
5,657,000 + QEN71_RS25430 0.33 +0.5
5,657,071 + QEN71_RS25430 0.39 -0.4
5,657,072 - QEN71_RS25430 0.39 -0.1
5,657,072 - QEN71_RS25430 0.39 -0.8
5,657,246 - QEN71_RS25430 0.54 -0.1
5,657,248 + QEN71_RS25430 0.54 -0.3
5,657,248 + QEN71_RS25430 0.54 -1.0
5,657,248 + QEN71_RS25430 0.54 -0.7
5,657,248 + QEN71_RS25430 0.54 -0.7
5,657,249 - QEN71_RS25430 0.54 -1.8
5,657,249 - QEN71_RS25430 0.54 -0.3
5,657,270 + QEN71_RS25430 0.56 +0.4
5,657,286 + QEN71_RS25430 0.57 -0.7
5,657,287 - QEN71_RS25430 0.57 -1.7
5,657,287 - QEN71_RS25430 0.57 +0.6
5,657,287 - QEN71_RS25430 0.57 +0.5
5,657,319 + QEN71_RS25430 0.60 -2.3
5,657,319 + QEN71_RS25430 0.60 -0.4
5,657,319 + QEN71_RS25430 0.60 -2.6
5,657,319 + QEN71_RS25430 0.60 -0.1
5,657,319 + QEN71_RS25430 0.60 -0.3
5,657,319 + QEN71_RS25430 0.60 -2.4
5,657,319 + QEN71_RS25430 0.60 -3.1
5,657,319 + QEN71_RS25430 0.60 -0.9
5,657,319 + QEN71_RS25430 0.60 -2.3
5,657,319 + QEN71_RS25430 0.60 -1.5
5,657,319 + QEN71_RS25430 0.60 -1.8
5,657,319 + QEN71_RS25430 0.60 -0.8
5,657,319 + QEN71_RS25430 0.60 -0.4
5,657,320 - QEN71_RS25430 0.60 -2.6
5,657,320 - QEN71_RS25430 0.60 -1.9
5,657,424 + QEN71_RS25430 0.69 -2.4
5,657,424 + QEN71_RS25430 0.69 +0.1
5,657,425 - QEN71_RS25430 0.69 -0.1
5,657,425 - QEN71_RS25430 0.69 -0.4
5,657,491 - QEN71_RS25430 0.75 -1.8
5,657,606 - QEN71_RS25430 0.84 -0.9
5,657,606 - QEN71_RS25430 0.84 -0.7
5,657,618 + QEN71_RS25430 0.85 -1.0
5,657,618 + QEN71_RS25430 0.85 -0.3
5,657,623 + QEN71_RS25430 0.86 +0.1
5,657,624 - QEN71_RS25430 0.86 -0.6
5,657,624 - QEN71_RS25430 0.86 -1.9
5,657,660 + QEN71_RS25430 0.89 -1.4
5,657,660 + QEN71_RS25430 0.89 -0.4
5,657,661 - QEN71_RS25430 0.89 -2.8
5,657,748 + -0.7
5,657,748 + -2.9
5,657,779 + +0.0
5,657,779 + +0.1
5,657,780 - +1.0
5,657,788 - -0.1
5,657,845 + +0.1
5,657,879 - +0.9
5,657,885 + -0.6
5,657,886 - -0.2
5,657,886 - -1.4
5,657,886 - -0.4
5,657,886 - +0.3
5,657,886 - -1.1
5,657,886 - -1.4
5,658,102 - QEN71_RS25435 0.29 -0.6
5,658,102 - QEN71_RS25435 0.29 -1.6
5,658,112 + QEN71_RS25435 0.30 -2.1
5,658,112 + QEN71_RS25435 0.30 +2.2
5,658,112 + QEN71_RS25435 0.30 -1.5
5,658,113 - QEN71_RS25435 0.30 -1.2
5,658,113 - QEN71_RS25435 0.30 -0.3
5,658,113 - QEN71_RS25435 0.30 -0.2
5,658,113 - QEN71_RS25435 0.30 -2.1
5,658,194 + QEN71_RS25435 0.38 -4.0
5,658,194 + QEN71_RS25435 0.38 -0.5
5,658,195 - QEN71_RS25435 0.39 -1.1
5,658,195 - QEN71_RS25435 0.39 -1.5
5,658,195 - QEN71_RS25435 0.39 -1.3
5,658,416 + QEN71_RS25435 0.60 -1.1
5,658,416 + QEN71_RS25435 0.60 -1.0
5,658,416 + QEN71_RS25435 0.60 -0.5
5,658,416 + QEN71_RS25435 0.60 +1.6
5,658,417 - QEN71_RS25435 0.60 +0.9
5,658,417 - QEN71_RS25435 0.60 -0.2
5,658,417 - QEN71_RS25435 0.60 -1.3
5,658,417 - QEN71_RS25435 0.60 -0.8
5,658,417 - QEN71_RS25435 0.60 -1.8
5,658,417 - QEN71_RS25435 0.60 -1.1
5,658,473 + QEN71_RS25435 0.66 -1.8
5,658,474 - QEN71_RS25435 0.66 -1.3
5,658,474 - QEN71_RS25435 0.66 -2.5
5,658,474 - QEN71_RS25435 0.66 +1.9
5,658,478 + QEN71_RS25435 0.66 -3.7
5,658,478 + QEN71_RS25435 0.66 +0.1
5,658,479 - QEN71_RS25435 0.66 -0.1
5,658,479 - QEN71_RS25435 0.66 -0.1
5,658,479 - QEN71_RS25435 0.66 +0.2
5,658,479 - QEN71_RS25435 0.66 -0.9
5,658,479 - QEN71_RS25435 0.66 -0.6
5,658,479 - QEN71_RS25435 0.66 -1.8
5,658,479 - QEN71_RS25435 0.66 -0.5
5,658,506 + QEN71_RS25435 0.69 -2.2
5,658,506 + QEN71_RS25435 0.69 +0.6
5,658,506 + QEN71_RS25435 0.69 -2.1
5,658,507 - QEN71_RS25435 0.69 -3.5
5,658,538 + QEN71_RS25435 0.72 -1.8
5,658,538 + QEN71_RS25435 0.72 -1.9
5,658,538 + QEN71_RS25435 0.72 -0.3
5,658,538 + QEN71_RS25435 0.72 -2.1
5,658,539 - QEN71_RS25435 0.72 +2.2
5,658,539 - QEN71_RS25435 0.72 -1.3
5,658,539 - QEN71_RS25435 0.72 -1.4
5,658,539 - QEN71_RS25435 0.72 +0.1
5,658,539 - QEN71_RS25435 0.72 -0.3
5,658,539 - QEN71_RS25435 0.72 +0.5
5,658,608 + QEN71_RS25435 0.79 -0.6
5,658,608 + QEN71_RS25435 0.79 -3.5
5,658,608 + QEN71_RS25435 0.79 -1.4
5,658,609 - QEN71_RS25435 0.79 -0.9
5,658,609 - QEN71_RS25435 0.79 -0.6
5,658,610 + QEN71_RS25435 0.79 -0.2
5,658,611 - QEN71_RS25435 0.79 -1.4
5,658,665 + QEN71_RS25435 0.84 -1.4
5,658,755 + -1.4
5,658,821 + -3.5
5,658,822 - +0.0
5,658,892 + -0.4
5,658,892 + -0.4
5,658,892 + -0.6
5,658,892 + -0.1
5,658,892 + -1.4
5,658,892 + +1.5
5,658,892 + -1.5
5,658,893 - -0.9
5,658,893 - +1.3
5,658,893 - -0.2
5,658,893 - -1.0
5,658,893 - -0.4
5,658,906 - -0.6
5,659,207 - QEN71_RS25440 0.36 +0.2
5,659,269 + QEN71_RS25440 0.50 -1.1
5,659,270 - QEN71_RS25440 0.51 -2.2
5,659,273 + QEN71_RS25440 0.51 -0.3
5,659,273 + QEN71_RS25440 0.51 -0.1
5,659,274 - QEN71_RS25440 0.52 -0.6
5,659,274 - QEN71_RS25440 0.52 -0.1
5,659,294 + QEN71_RS25440 0.56 -0.1
5,659,294 + QEN71_RS25440 0.56 +0.5
5,659,294 + QEN71_RS25440 0.56 -0.4
5,659,294 + QEN71_RS25440 0.56 -1.2
5,659,294 + QEN71_RS25440 0.56 -0.5
5,659,294 + QEN71_RS25440 0.56 +0.2
5,659,295 - QEN71_RS25440 0.56 -0.1
5,659,295 - QEN71_RS25440 0.56 +0.6
5,659,295 - QEN71_RS25440 0.56 -1.1
5,659,416 + QEN71_RS25440 0.84 -1.0
5,659,416 + QEN71_RS25440 0.84 +0.3
5,659,417 - QEN71_RS25440 0.84 +0.2
5,659,417 - QEN71_RS25440 0.84 +1.5
5,659,417 - QEN71_RS25440 0.84 -0.1
5,659,417 - QEN71_RS25440 0.84 -0.7
5,659,527 + +0.2
5,659,527 + +0.0
5,659,527 + -0.8
5,659,527 + -0.2
5,659,527 + +0.2
5,659,527 + +0.4
5,659,527 + -0.2
5,659,527 + -0.7
5,659,527 + +0.8
5,659,528 - -1.0
5,659,528 - +0.1
5,659,528 - -1.0
5,659,570 + +0.1
5,659,570 + -0.3
5,659,570 + +0.1
5,659,570 + -0.3
5,659,586 + +0.0
5,659,587 - +0.9
5,659,612 + -1.0
5,659,683 + -0.4
5,659,683 + +0.1
5,659,683 + -0.1
5,659,684 - -0.1
5,659,733 + +0.2
5,659,790 + -0.3

Or see this region's nucleotide sequence