Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23095

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23090 and QEN71_RS23095 are separated by 24 nucleotidesQEN71_RS23095 and QEN71_RS23100 are separated by 165 nucleotides QEN71_RS23090: QEN71_RS23090 - tRNA pseudouridine(55) synthase TruB, at 5,133,119 to 5,134,048 _RS23090 QEN71_RS23095: QEN71_RS23095 - 30S ribosome-binding factor RbfA, at 5,134,073 to 5,134,438 _RS23095 QEN71_RS23100: QEN71_RS23100 - translation initiation factor IF-2, at 5,134,604 to 5,137,504 _RS23100 Position (kb) 5134 5135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5133.121 kb on - strandat 5133.128 kb on + strandat 5133.128 kb on + strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.129 kb on - strandat 5133.130 kb on + strandat 5133.130 kb on + strandat 5133.130 kb on + strandat 5133.130 kb on + strandat 5133.130 kb on + strandat 5133.130 kb on + strandat 5133.131 kb on - strandat 5133.131 kb on - strandat 5133.131 kb on - strandat 5133.131 kb on - strandat 5133.131 kb on - strandat 5133.131 kb on - strandat 5133.199 kb on - strandat 5133.199 kb on - strandat 5133.199 kb on - strandat 5133.322 kb on + strand, within QEN71_RS23090at 5133.323 kb on - strand, within QEN71_RS23090at 5133.323 kb on - strand, within QEN71_RS23090at 5133.323 kb on - strand, within QEN71_RS23090at 5133.433 kb on + strand, within QEN71_RS23090at 5133.433 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.504 kb on + strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.505 kb on - strand, within QEN71_RS23090at 5133.624 kb on + strand, within QEN71_RS23090at 5133.624 kb on + strand, within QEN71_RS23090at 5133.630 kb on + strand, within QEN71_RS23090at 5133.631 kb on - strand, within QEN71_RS23090at 5133.663 kb on + strand, within QEN71_RS23090at 5133.663 kb on + strand, within QEN71_RS23090at 5133.664 kb on - strand, within QEN71_RS23090at 5133.813 kb on + strand, within QEN71_RS23090at 5133.813 kb on + strand, within QEN71_RS23090at 5133.813 kb on + strand, within QEN71_RS23090at 5133.813 kb on + strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.814 kb on - strand, within QEN71_RS23090at 5133.910 kb on + strand, within QEN71_RS23090at 5133.933 kb on + strand, within QEN71_RS23090at 5133.933 kb on + strand, within QEN71_RS23090at 5133.934 kb on - strand, within QEN71_RS23090at 5133.934 kb on - strand, within QEN71_RS23090at 5133.934 kb on - strand, within QEN71_RS23090at 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.048 kb on + strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.049 kb on - strandat 5134.538 kb on - strandat 5134.590 kb on - strandat 5134.590 kb on - strandat 5134.590 kb on - strandat 5134.590 kb on - strandat 5134.590 kb on - strandat 5134.590 kb on - strandat 5134.590 kb on - strandat 5134.606 kb on - strandat 5134.613 kb on - strandat 5134.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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5,133,121 - +0.2
5,133,128 + +0.9
5,133,128 + +0.5
5,133,129 - -1.8
5,133,129 - -0.1
5,133,129 - -0.7
5,133,129 - -0.7
5,133,129 - -0.6
5,133,129 - -0.0
5,133,129 - +0.5
5,133,129 - -1.0
5,133,129 - -1.8
5,133,130 + +0.5
5,133,130 + +0.0
5,133,130 + +0.4
5,133,130 + +0.9
5,133,130 + -1.6
5,133,130 + -0.1
5,133,131 - -0.7
5,133,131 - +0.4
5,133,131 - -0.1
5,133,131 - -0.5
5,133,131 - -1.3
5,133,131 - -1.5
5,133,199 - -0.9
5,133,199 - -0.6
5,133,199 - -1.5
5,133,322 + QEN71_RS23090 0.22 -1.1
5,133,323 - QEN71_RS23090 0.22 +0.4
5,133,323 - QEN71_RS23090 0.22 -0.3
5,133,323 - QEN71_RS23090 0.22 +0.1
5,133,433 + QEN71_RS23090 0.34 +0.1
5,133,433 + QEN71_RS23090 0.34 +0.1
5,133,504 + QEN71_RS23090 0.41 -1.1
5,133,504 + QEN71_RS23090 0.41 +1.3
5,133,504 + QEN71_RS23090 0.41 +0.6
5,133,504 + QEN71_RS23090 0.41 -0.7
5,133,504 + QEN71_RS23090 0.41 -0.5
5,133,504 + QEN71_RS23090 0.41 +0.4
5,133,504 + QEN71_RS23090 0.41 +0.7
5,133,504 + QEN71_RS23090 0.41 +0.2
5,133,505 - QEN71_RS23090 0.42 +0.6
5,133,505 - QEN71_RS23090 0.42 +1.2
5,133,505 - QEN71_RS23090 0.42 +0.3
5,133,505 - QEN71_RS23090 0.42 +2.2
5,133,505 - QEN71_RS23090 0.42 +1.6
5,133,505 - QEN71_RS23090 0.42 -0.1
5,133,505 - QEN71_RS23090 0.42 -3.1
5,133,505 - QEN71_RS23090 0.42 +0.9
5,133,624 + QEN71_RS23090 0.54 +0.4
5,133,624 + QEN71_RS23090 0.54 -0.1
5,133,630 + QEN71_RS23090 0.55 -0.4
5,133,631 - QEN71_RS23090 0.55 -0.4
5,133,663 + QEN71_RS23090 0.58 -0.6
5,133,663 + QEN71_RS23090 0.58 -1.6
5,133,664 - QEN71_RS23090 0.59 -0.3
5,133,813 + QEN71_RS23090 0.75 -0.6
5,133,813 + QEN71_RS23090 0.75 -0.9
5,133,813 + QEN71_RS23090 0.75 -0.1
5,133,813 + QEN71_RS23090 0.75 -1.4
5,133,814 - QEN71_RS23090 0.75 -0.6
5,133,814 - QEN71_RS23090 0.75 -0.6
5,133,814 - QEN71_RS23090 0.75 +1.4
5,133,814 - QEN71_RS23090 0.75 -0.4
5,133,814 - QEN71_RS23090 0.75 +0.2
5,133,814 - QEN71_RS23090 0.75 +1.2
5,133,814 - QEN71_RS23090 0.75 -0.2
5,133,814 - QEN71_RS23090 0.75 +0.6
5,133,910 + QEN71_RS23090 0.85 +0.6
5,133,933 + QEN71_RS23090 0.88 +0.1
5,133,933 + QEN71_RS23090 0.88 -0.4
5,133,934 - QEN71_RS23090 0.88 +0.6
5,133,934 - QEN71_RS23090 0.88 +0.7
5,133,934 - QEN71_RS23090 0.88 -0.3
5,134,048 + +0.3
5,134,048 + +0.8
5,134,048 + +0.2
5,134,048 + -0.6
5,134,048 + +1.2
5,134,048 + -0.5
5,134,048 + -0.6
5,134,048 + -0.4
5,134,048 + -0.5
5,134,048 + -1.6
5,134,048 + +1.5
5,134,048 + +1.0
5,134,048 + -0.7
5,134,049 - -1.1
5,134,049 - +0.2
5,134,049 - +1.7
5,134,049 - -1.9
5,134,049 - -0.4
5,134,049 - +0.1
5,134,049 - +0.2
5,134,049 - -0.5
5,134,049 - +0.5
5,134,049 - -0.4
5,134,049 - -2.3
5,134,049 - -0.4
5,134,049 - +0.9
5,134,049 - -1.3
5,134,049 - +0.9
5,134,049 - +1.2
5,134,049 - -1.4
5,134,049 - -0.1
5,134,049 - -0.9
5,134,049 - -0.1
5,134,538 - +1.7
5,134,590 - +1.1
5,134,590 - +2.2
5,134,590 - +1.2
5,134,590 - +1.7
5,134,590 - +0.9
5,134,590 - -0.3
5,134,590 - +0.5
5,134,606 - +0.8
5,134,613 - -1.5
5,134,613 - -2.0

Or see this region's nucleotide sequence