Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS20445

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS20440 and QEN71_RS20445 are separated by 76 nucleotidesQEN71_RS20445 and QEN71_RS20450 are separated by 148 nucleotidesQEN71_RS20450 and QEN71_RS20455 are separated by 220 nucleotides QEN71_RS20440: QEN71_RS20440 - aldehyde dehydrogenase family protein, at 4,541,459 to 4,542,910 _RS20440 QEN71_RS20445: QEN71_RS20445 - LysE family translocator, at 4,542,987 to 4,543,610 _RS20445 QEN71_RS20450: QEN71_RS20450 - hypothetical protein, at 4,543,759 to 4,544,316 _RS20450 QEN71_RS20455: QEN71_RS20455 - hypothetical protein, at 4,544,537 to 4,545,325 _RS20455 Position (kb) 4542 4543 4544Strain fitness (log2 ratio) -2 -1 0 1 2at 4542.360 kb on - strand, within QEN71_RS20440at 4542.360 kb on - strand, within QEN71_RS20440at 4542.482 kb on + strand, within QEN71_RS20440at 4542.482 kb on + strand, within QEN71_RS20440at 4542.483 kb on - strand, within QEN71_RS20440at 4542.689 kb on + strand, within QEN71_RS20440at 4542.689 kb on + strand, within QEN71_RS20440at 4542.689 kb on + strand, within QEN71_RS20440at 4542.689 kb on + strand, within QEN71_RS20440at 4542.689 kb on + strand, within QEN71_RS20440at 4542.689 kb on + strand, within QEN71_RS20440at 4542.689 kb on + strand, within QEN71_RS20440at 4542.690 kb on - strand, within QEN71_RS20440at 4542.782 kb on + strandat 4542.782 kb on + strandat 4542.782 kb on + strandat 4542.782 kb on + strandat 4542.783 kb on - strandat 4542.783 kb on - strandat 4542.788 kb on + strandat 4542.788 kb on + strandat 4542.788 kb on + strandat 4542.908 kb on + strandat 4542.909 kb on - strandat 4542.909 kb on - strandat 4542.961 kb on + strandat 4542.967 kb on + strandat 4542.968 kb on - strandat 4542.968 kb on - strandat 4543.118 kb on - strand, within QEN71_RS20445at 4543.367 kb on - strand, within QEN71_RS20445at 4543.367 kb on - strand, within QEN71_RS20445at 4543.760 kb on + strandat 4543.761 kb on - strandat 4543.884 kb on + strand, within QEN71_RS20450at 4543.934 kb on + strand, within QEN71_RS20450at 4543.935 kb on - strand, within QEN71_RS20450at 4544.138 kb on + strand, within QEN71_RS20450at 4544.168 kb on + strand, within QEN71_RS20450at 4544.456 kb on + strandat 4544.456 kb on + strandat 4544.468 kb on + strandat 4544.469 kb on - strandat 4544.469 kb on - strandat 4544.469 kb on - strandat 4544.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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4,542,360 - QEN71_RS20440 0.62 -0.6
4,542,360 - QEN71_RS20440 0.62 -0.9
4,542,482 + QEN71_RS20440 0.70 +1.3
4,542,482 + QEN71_RS20440 0.70 +0.0
4,542,483 - QEN71_RS20440 0.71 +2.2
4,542,689 + QEN71_RS20440 0.85 -0.1
4,542,689 + QEN71_RS20440 0.85 -0.8
4,542,689 + QEN71_RS20440 0.85 +1.2
4,542,689 + QEN71_RS20440 0.85 -0.1
4,542,689 + QEN71_RS20440 0.85 +2.4
4,542,689 + QEN71_RS20440 0.85 +0.6
4,542,689 + QEN71_RS20440 0.85 +0.6
4,542,690 - QEN71_RS20440 0.85 +0.5
4,542,782 + -2.7
4,542,782 + -1.0
4,542,782 + -0.2
4,542,782 + -2.1
4,542,783 - -0.5
4,542,783 - +0.1
4,542,788 + -0.2
4,542,788 + -1.5
4,542,788 + -0.2
4,542,908 + -0.4
4,542,909 - -0.3
4,542,909 - -0.2
4,542,961 + -0.9
4,542,967 + +0.9
4,542,968 - +0.1
4,542,968 - +0.6
4,543,118 - QEN71_RS20445 0.21 +0.4
4,543,367 - QEN71_RS20445 0.61 +0.2
4,543,367 - QEN71_RS20445 0.61 -2.6
4,543,760 + -0.2
4,543,761 - -0.2
4,543,884 + QEN71_RS20450 0.22 +0.4
4,543,934 + QEN71_RS20450 0.31 +0.4
4,543,935 - QEN71_RS20450 0.32 +0.9
4,544,138 + QEN71_RS20450 0.68 +0.9
4,544,168 + QEN71_RS20450 0.73 +0.9
4,544,456 + -0.8
4,544,456 + +0.3
4,544,468 + +0.8
4,544,469 - -0.2
4,544,469 - -0.2
4,544,469 - -0.6
4,544,591 + -0.1

Or see this region's nucleotide sequence