Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS18975 and QEN71_RS18980 are separated by 46 nucleotides QEN71_RS18980 and QEN71_RS18985 are separated by 199 nucleotides QEN71_RS18985 and QEN71_RS18990 are separated by 49 nucleotides QEN71_RS18990 and QEN71_RS18995 are separated by 241 nucleotides
QEN71_RS18975: QEN71_RS18975 - zinc-dependent alcohol dehydrogenase, at 4,224,665 to 4,225,834
_RS18975
QEN71_RS18980: QEN71_RS18980 - CsbD family protein, at 4,225,881 to 4,226,084
_RS18980
QEN71_RS18985: QEN71_RS18985 - response regulator, at 4,226,284 to 4,226,784
_RS18985
QEN71_RS18990: QEN71_RS18990 - hypothetical protein, at 4,226,834 to 4,227,034
_RS18990
QEN71_RS18995: QEN71_RS18995 - ATPase domain-containing protein, at 4,227,276 to 4,228,715
_RS18995
Position (kb) 4226
4227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4225.376 kb on + strand, within QEN71_RS18975 at 4225.377 kb on - strand, within QEN71_RS18975 at 4225.411 kb on - strand, within QEN71_RS18975 at 4225.450 kb on + strand, within QEN71_RS18975 at 4225.452 kb on + strand, within QEN71_RS18975 at 4225.871 kb on + strand at 4226.038 kb on + strand, within QEN71_RS18980 at 4226.039 kb on - strand, within QEN71_RS18980 at 4226.039 kb on - strand, within QEN71_RS18980 at 4226.073 kb on - strand at 4226.135 kb on - strand at 4226.235 kb on + strand at 4226.235 kb on + strand at 4226.235 kb on + strand at 4226.235 kb on + strand at 4226.236 kb on - strand at 4226.284 kb on - strand at 4226.284 kb on - strand at 4226.284 kb on - strand at 4226.398 kb on + strand, within QEN71_RS18985 at 4226.398 kb on + strand, within QEN71_RS18985 at 4226.399 kb on - strand, within QEN71_RS18985 at 4226.399 kb on - strand, within QEN71_RS18985 at 4226.496 kb on + strand, within QEN71_RS18985 at 4226.497 kb on - strand, within QEN71_RS18985 at 4226.560 kb on + strand, within QEN71_RS18985 at 4226.560 kb on + strand, within QEN71_RS18985 at 4226.560 kb on + strand, within QEN71_RS18985 at 4226.561 kb on - strand, within QEN71_RS18985 at 4226.630 kb on + strand, within QEN71_RS18985 at 4226.631 kb on - strand, within QEN71_RS18985 at 4226.631 kb on - strand, within QEN71_RS18985 at 4226.631 kb on - strand, within QEN71_RS18985 at 4226.641 kb on + strand, within QEN71_RS18985 at 4226.642 kb on - strand, within QEN71_RS18985 at 4226.891 kb on + strand, within QEN71_RS18990 at 4226.891 kb on + strand, within QEN71_RS18990 at 4226.891 kb on + strand, within QEN71_RS18990 at 4226.892 kb on - strand, within QEN71_RS18990 at 4226.980 kb on + strand, within QEN71_RS18990 at 4226.980 kb on + strand, within QEN71_RS18990 at 4226.980 kb on + strand, within QEN71_RS18990 at 4227.210 kb on + strand at 4227.210 kb on + strand at 4227.211 kb on - strand at 4227.211 kb on - strand at 4227.252 kb on - strand at 4227.360 kb on + strand at 4227.360 kb on + strand at 4227.361 kb on - strand at 4227.361 kb on - strand at 4227.450 kb on + strand, within QEN71_RS18995 at 4227.451 kb on - strand, within QEN71_RS18995 at 4227.451 kb on - strand, within QEN71_RS18995 at 4227.451 kb on - strand, within QEN71_RS18995 at 4227.451 kb on - strand, within QEN71_RS18995 at 4227.546 kb on + strand, within QEN71_RS18995 at 4227.546 kb on + strand, within QEN71_RS18995 at 4227.547 kb on - strand, within QEN71_RS18995 at 4227.547 kb on - strand, within QEN71_RS18995 at 4227.547 kb on - strand, within QEN71_RS18995 at 4227.547 kb on - strand, within QEN71_RS18995 at 4227.548 kb on + strand, within QEN71_RS18995 at 4227.743 kb on + strand, within QEN71_RS18995
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 4,225,376 + QEN71_RS18975 0.61 -0.6 4,225,377 - QEN71_RS18975 0.61 -1.9 4,225,411 - QEN71_RS18975 0.64 +0.3 4,225,450 + QEN71_RS18975 0.67 -0.6 4,225,452 + QEN71_RS18975 0.67 -1.6 4,225,871 + -0.1 4,226,038 + QEN71_RS18980 0.77 -0.5 4,226,039 - QEN71_RS18980 0.77 +0.2 4,226,039 - QEN71_RS18980 0.77 -1.0 4,226,073 - -0.4 4,226,135 - +2.2 4,226,235 + +0.6 4,226,235 + -1.4 4,226,235 + -0.5 4,226,235 + +0.0 4,226,236 - +0.7 4,226,284 - -0.4 4,226,284 - -0.2 4,226,284 - -1.6 4,226,398 + QEN71_RS18985 0.23 -0.6 4,226,398 + QEN71_RS18985 0.23 -0.3 4,226,399 - QEN71_RS18985 0.23 +0.4 4,226,399 - QEN71_RS18985 0.23 -0.5 4,226,496 + QEN71_RS18985 0.42 -0.1 4,226,497 - QEN71_RS18985 0.43 -0.8 4,226,560 + QEN71_RS18985 0.55 -0.3 4,226,560 + QEN71_RS18985 0.55 -1.2 4,226,560 + QEN71_RS18985 0.55 -0.7 4,226,561 - QEN71_RS18985 0.55 -1.0 4,226,630 + QEN71_RS18985 0.69 -0.8 4,226,631 - QEN71_RS18985 0.69 -0.5 4,226,631 - QEN71_RS18985 0.69 +0.5 4,226,631 - QEN71_RS18985 0.69 +0.6 4,226,641 + QEN71_RS18985 0.71 -0.1 4,226,642 - QEN71_RS18985 0.71 +0.2 4,226,891 + QEN71_RS18990 0.28 -1.2 4,226,891 + QEN71_RS18990 0.28 -0.9 4,226,891 + QEN71_RS18990 0.28 +0.0 4,226,892 - QEN71_RS18990 0.29 -1.6 4,226,980 + QEN71_RS18990 0.73 -1.3 4,226,980 + QEN71_RS18990 0.73 -0.8 4,226,980 + QEN71_RS18990 0.73 -0.9 4,227,210 + -0.8 4,227,210 + -1.1 4,227,211 - -1.4 4,227,211 - -1.2 4,227,252 - -0.6 4,227,360 + -1.6 4,227,360 + -0.3 4,227,361 - -0.8 4,227,361 - -0.2 4,227,450 + QEN71_RS18995 0.12 +0.2 4,227,451 - QEN71_RS18995 0.12 -0.8 4,227,451 - QEN71_RS18995 0.12 -1.9 4,227,451 - QEN71_RS18995 0.12 +0.6 4,227,451 - QEN71_RS18995 0.12 -0.9 4,227,546 + QEN71_RS18995 0.19 -0.3 4,227,546 + QEN71_RS18995 0.19 -0.3 4,227,547 - QEN71_RS18995 0.19 +0.3 4,227,547 - QEN71_RS18995 0.19 -1.1 4,227,547 - QEN71_RS18995 0.19 +0.0 4,227,547 - QEN71_RS18995 0.19 +1.0 4,227,548 + QEN71_RS18995 0.19 -0.7 4,227,743 + QEN71_RS18995 0.32 -0.1
Or see this region's nucleotide sequence