Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08840

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08835 and QEN71_RS08840 are separated by 67 nucleotidesQEN71_RS08840 and QEN71_RS08845 are separated by 98 nucleotidesQEN71_RS08845 and QEN71_RS08850 are separated by 81 nucleotides QEN71_RS08835: QEN71_RS08835 - glycoside hydrolase family 31 protein, at 1,984,922 to 1,987,363 _RS08835 QEN71_RS08840: QEN71_RS08840 - porin, at 1,987,431 to 1,988,618 _RS08840 QEN71_RS08845: QEN71_RS08845 - VOC family protein, at 1,988,717 to 1,989,109 _RS08845 QEN71_RS08850: QEN71_RS08850 - DMT family transporter, at 1,989,191 to 1,990,123 _RS08850 Position (kb) 1987 1988 1989Strain fitness (log2 ratio) -2 -1 0 1 2at 1986.440 kb on + strand, within QEN71_RS08835at 1986.440 kb on + strand, within QEN71_RS08835at 1986.440 kb on + strand, within QEN71_RS08835at 1986.440 kb on + strand, within QEN71_RS08835at 1986.441 kb on - strand, within QEN71_RS08835at 1986.441 kb on - strand, within QEN71_RS08835at 1986.441 kb on - strand, within QEN71_RS08835at 1986.653 kb on + strand, within QEN71_RS08835at 1986.714 kb on - strand, within QEN71_RS08835at 1986.719 kb on + strand, within QEN71_RS08835at 1986.719 kb on + strand, within QEN71_RS08835at 1986.719 kb on + strand, within QEN71_RS08835at 1986.719 kb on + strand, within QEN71_RS08835at 1986.719 kb on + strand, within QEN71_RS08835at 1986.720 kb on - strand, within QEN71_RS08835at 1986.720 kb on - strand, within QEN71_RS08835at 1986.720 kb on - strand, within QEN71_RS08835at 1986.749 kb on + strand, within QEN71_RS08835at 1986.918 kb on - strand, within QEN71_RS08835at 1987.540 kb on - strandat 1987.599 kb on + strand, within QEN71_RS08840at 1987.599 kb on + strand, within QEN71_RS08840at 1987.599 kb on + strand, within QEN71_RS08840at 1987.600 kb on - strand, within QEN71_RS08840at 1987.600 kb on - strand, within QEN71_RS08840at 1987.600 kb on - strand, within QEN71_RS08840at 1987.600 kb on - strand, within QEN71_RS08840at 1987.600 kb on - strand, within QEN71_RS08840at 1987.755 kb on + strand, within QEN71_RS08840at 1987.755 kb on + strand, within QEN71_RS08840at 1987.755 kb on + strand, within QEN71_RS08840at 1987.756 kb on - strand, within QEN71_RS08840at 1987.756 kb on - strand, within QEN71_RS08840at 1987.756 kb on - strand, within QEN71_RS08840at 1987.756 kb on - strand, within QEN71_RS08840at 1987.756 kb on - strand, within QEN71_RS08840at 1987.756 kb on - strand, within QEN71_RS08840at 1987.779 kb on + strand, within QEN71_RS08840at 1987.806 kb on + strand, within QEN71_RS08840at 1987.815 kb on + strand, within QEN71_RS08840at 1987.816 kb on - strand, within QEN71_RS08840at 1987.816 kb on - strand, within QEN71_RS08840at 1987.901 kb on + strand, within QEN71_RS08840at 1987.932 kb on + strand, within QEN71_RS08840at 1987.932 kb on + strand, within QEN71_RS08840at 1987.932 kb on + strand, within QEN71_RS08840at 1987.932 kb on + strand, within QEN71_RS08840at 1987.933 kb on - strand, within QEN71_RS08840at 1987.933 kb on - strand, within QEN71_RS08840at 1987.947 kb on - strand, within QEN71_RS08840at 1987.974 kb on + strand, within QEN71_RS08840at 1987.975 kb on - strand, within QEN71_RS08840at 1988.044 kb on - strand, within QEN71_RS08840at 1988.071 kb on - strand, within QEN71_RS08840at 1988.071 kb on - strand, within QEN71_RS08840at 1988.190 kb on + strand, within QEN71_RS08840at 1988.191 kb on - strand, within QEN71_RS08840at 1988.191 kb on - strand, within QEN71_RS08840at 1988.192 kb on + strand, within QEN71_RS08840at 1988.193 kb on - strand, within QEN71_RS08840at 1988.193 kb on - strand, within QEN71_RS08840at 1988.193 kb on - strand, within QEN71_RS08840at 1988.226 kb on + strand, within QEN71_RS08840at 1988.226 kb on + strand, within QEN71_RS08840at 1988.227 kb on - strand, within QEN71_RS08840at 1988.241 kb on + strand, within QEN71_RS08840at 1988.242 kb on - strand, within QEN71_RS08840at 1988.293 kb on - strand, within QEN71_RS08840at 1988.310 kb on + strand, within QEN71_RS08840at 1988.347 kb on - strand, within QEN71_RS08840at 1988.347 kb on - strand, within QEN71_RS08840at 1988.348 kb on + strand, within QEN71_RS08840at 1988.348 kb on + strand, within QEN71_RS08840at 1988.348 kb on + strand, within QEN71_RS08840at 1988.348 kb on + strand, within QEN71_RS08840at 1988.348 kb on + strand, within QEN71_RS08840at 1988.348 kb on + strand, within QEN71_RS08840at 1988.348 kb on + strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.349 kb on - strand, within QEN71_RS08840at 1988.352 kb on + strand, within QEN71_RS08840at 1988.352 kb on + strand, within QEN71_RS08840at 1988.353 kb on - strand, within QEN71_RS08840at 1988.353 kb on - strand, within QEN71_RS08840at 1988.353 kb on - strand, within QEN71_RS08840at 1988.397 kb on + strand, within QEN71_RS08840at 1988.397 kb on + strand, within QEN71_RS08840at 1988.398 kb on - strand, within QEN71_RS08840at 1988.424 kb on + strand, within QEN71_RS08840at 1988.424 kb on + strand, within QEN71_RS08840at 1988.425 kb on - strand, within QEN71_RS08840at 1988.451 kb on + strand, within QEN71_RS08840at 1988.451 kb on + strand, within QEN71_RS08840at 1988.451 kb on + strand, within QEN71_RS08840at 1988.451 kb on + strand, within QEN71_RS08840at 1988.452 kb on - strand, within QEN71_RS08840at 1988.452 kb on - strand, within QEN71_RS08840at 1988.466 kb on + strand, within QEN71_RS08840at 1988.467 kb on - strand, within QEN71_RS08840at 1988.632 kb on - strandat 1988.632 kb on - strandat 1988.709 kb on - strandat 1988.733 kb on + strandat 1988.734 kb on - strandat 1988.772 kb on + strand, within QEN71_RS08845at 1988.781 kb on + strand, within QEN71_RS08845at 1988.781 kb on + strand, within QEN71_RS08845at 1988.782 kb on - strand, within QEN71_RS08845at 1988.782 kb on - strand, within QEN71_RS08845at 1988.782 kb on - strand, within QEN71_RS08845at 1988.782 kb on - strand, within QEN71_RS08845at 1988.782 kb on - strand, within QEN71_RS08845at 1988.782 kb on - strand, within QEN71_RS08845at 1988.985 kb on + strand, within QEN71_RS08845at 1988.985 kb on + strand, within QEN71_RS08845at 1988.985 kb on + strand, within QEN71_RS08845at 1988.986 kb on - strand, within QEN71_RS08845at 1988.986 kb on - strand, within QEN71_RS08845at 1988.986 kb on - strand, within QEN71_RS08845at 1989.035 kb on + strand, within QEN71_RS08845at 1989.035 kb on + strand, within QEN71_RS08845at 1989.035 kb on + strand, within QEN71_RS08845at 1989.035 kb on + strand, within QEN71_RS08845at 1989.036 kb on - strand, within QEN71_RS08845at 1989.036 kb on - strand, within QEN71_RS08845at 1989.054 kb on + strand, within QEN71_RS08845at 1989.055 kb on - strand, within QEN71_RS08845at 1989.055 kb on - strand, within QEN71_RS08845at 1989.092 kb on + strandat 1989.093 kb on - strandat 1989.093 kb on - strandat 1989.095 kb on + strandat 1989.095 kb on + strandat 1989.095 kb on + strandat 1989.095 kb on + strandat 1989.095 kb on + strandat 1989.095 kb on + strandat 1989.095 kb on + strandat 1989.095 kb on + strandat 1989.096 kb on - strandat 1989.096 kb on - strandat 1989.096 kb on - strandat 1989.096 kb on - strandat 1989.155 kb on + strandat 1989.155 kb on + strandat 1989.156 kb on - strandat 1989.336 kb on + strand, within QEN71_RS08850at 1989.460 kb on - strand, within QEN71_RS08850

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,986,440 + QEN71_RS08835 0.62 +0.7
1,986,440 + QEN71_RS08835 0.62 +1.8
1,986,440 + QEN71_RS08835 0.62 -0.5
1,986,440 + QEN71_RS08835 0.62 +1.0
1,986,441 - QEN71_RS08835 0.62 +0.0
1,986,441 - QEN71_RS08835 0.62 +0.6
1,986,441 - QEN71_RS08835 0.62 -0.0
1,986,653 + QEN71_RS08835 0.71 -0.0
1,986,714 - QEN71_RS08835 0.73 -0.4
1,986,719 + QEN71_RS08835 0.74 -1.4
1,986,719 + QEN71_RS08835 0.74 +0.1
1,986,719 + QEN71_RS08835 0.74 +0.0
1,986,719 + QEN71_RS08835 0.74 -0.9
1,986,719 + QEN71_RS08835 0.74 -0.5
1,986,720 - QEN71_RS08835 0.74 -0.9
1,986,720 - QEN71_RS08835 0.74 +0.1
1,986,720 - QEN71_RS08835 0.74 -1.0
1,986,749 + QEN71_RS08835 0.75 -0.5
1,986,918 - QEN71_RS08835 0.82 -1.9
1,987,540 - +1.0
1,987,599 + QEN71_RS08840 0.14 -1.2
1,987,599 + QEN71_RS08840 0.14 -0.3
1,987,599 + QEN71_RS08840 0.14 -0.2
1,987,600 - QEN71_RS08840 0.14 +0.3
1,987,600 - QEN71_RS08840 0.14 +0.1
1,987,600 - QEN71_RS08840 0.14 -1.7
1,987,600 - QEN71_RS08840 0.14 -0.2
1,987,600 - QEN71_RS08840 0.14 +0.1
1,987,755 + QEN71_RS08840 0.27 -0.2
1,987,755 + QEN71_RS08840 0.27 -0.6
1,987,755 + QEN71_RS08840 0.27 +0.6
1,987,756 - QEN71_RS08840 0.27 -2.6
1,987,756 - QEN71_RS08840 0.27 +0.1
1,987,756 - QEN71_RS08840 0.27 +0.0
1,987,756 - QEN71_RS08840 0.27 -0.8
1,987,756 - QEN71_RS08840 0.27 -1.1
1,987,756 - QEN71_RS08840 0.27 +0.2
1,987,779 + QEN71_RS08840 0.29 +1.2
1,987,806 + QEN71_RS08840 0.32 -0.2
1,987,815 + QEN71_RS08840 0.32 -0.1
1,987,816 - QEN71_RS08840 0.32 +1.0
1,987,816 - QEN71_RS08840 0.32 -0.8
1,987,901 + QEN71_RS08840 0.40 +0.0
1,987,932 + QEN71_RS08840 0.42 -0.4
1,987,932 + QEN71_RS08840 0.42 -0.1
1,987,932 + QEN71_RS08840 0.42 +0.1
1,987,932 + QEN71_RS08840 0.42 +0.0
1,987,933 - QEN71_RS08840 0.42 -0.5
1,987,933 - QEN71_RS08840 0.42 -0.2
1,987,947 - QEN71_RS08840 0.43 -1.7
1,987,974 + QEN71_RS08840 0.46 +0.1
1,987,975 - QEN71_RS08840 0.46 +0.3
1,988,044 - QEN71_RS08840 0.52 -0.5
1,988,071 - QEN71_RS08840 0.54 +0.1
1,988,071 - QEN71_RS08840 0.54 -0.5
1,988,190 + QEN71_RS08840 0.64 +1.6
1,988,191 - QEN71_RS08840 0.64 +0.1
1,988,191 - QEN71_RS08840 0.64 -1.7
1,988,192 + QEN71_RS08840 0.64 -0.4
1,988,193 - QEN71_RS08840 0.64 -0.2
1,988,193 - QEN71_RS08840 0.64 -0.5
1,988,193 - QEN71_RS08840 0.64 -0.6
1,988,226 + QEN71_RS08840 0.67 -0.2
1,988,226 + QEN71_RS08840 0.67 +0.9
1,988,227 - QEN71_RS08840 0.67 -0.3
1,988,241 + QEN71_RS08840 0.68 +0.2
1,988,242 - QEN71_RS08840 0.68 +0.4
1,988,293 - QEN71_RS08840 0.73 +0.6
1,988,310 + QEN71_RS08840 0.74 -0.6
1,988,347 - QEN71_RS08840 0.77 +0.4
1,988,347 - QEN71_RS08840 0.77 -0.2
1,988,348 + QEN71_RS08840 0.77 -0.4
1,988,348 + QEN71_RS08840 0.77 +0.1
1,988,348 + QEN71_RS08840 0.77 -0.5
1,988,348 + QEN71_RS08840 0.77 -0.8
1,988,348 + QEN71_RS08840 0.77 -1.2
1,988,348 + QEN71_RS08840 0.77 -0.4
1,988,348 + QEN71_RS08840 0.77 -0.1
1,988,349 - QEN71_RS08840 0.77 +0.5
1,988,349 - QEN71_RS08840 0.77 -0.1
1,988,349 - QEN71_RS08840 0.77 -0.7
1,988,349 - QEN71_RS08840 0.77 +0.1
1,988,349 - QEN71_RS08840 0.77 -1.9
1,988,349 - QEN71_RS08840 0.77 +0.1
1,988,349 - QEN71_RS08840 0.77 -0.3
1,988,349 - QEN71_RS08840 0.77 -0.4
1,988,352 + QEN71_RS08840 0.78 +0.4
1,988,352 + QEN71_RS08840 0.78 +0.1
1,988,353 - QEN71_RS08840 0.78 +0.8
1,988,353 - QEN71_RS08840 0.78 -0.5
1,988,353 - QEN71_RS08840 0.78 -0.7
1,988,397 + QEN71_RS08840 0.81 -0.1
1,988,397 + QEN71_RS08840 0.81 +1.0
1,988,398 - QEN71_RS08840 0.81 -0.5
1,988,424 + QEN71_RS08840 0.84 +0.8
1,988,424 + QEN71_RS08840 0.84 -1.9
1,988,425 - QEN71_RS08840 0.84 -0.7
1,988,451 + QEN71_RS08840 0.86 -1.0
1,988,451 + QEN71_RS08840 0.86 -0.8
1,988,451 + QEN71_RS08840 0.86 +0.3
1,988,451 + QEN71_RS08840 0.86 +0.7
1,988,452 - QEN71_RS08840 0.86 +0.0
1,988,452 - QEN71_RS08840 0.86 +0.6
1,988,466 + QEN71_RS08840 0.87 +0.5
1,988,467 - QEN71_RS08840 0.87 +1.0
1,988,632 - +0.5
1,988,632 - -0.7
1,988,709 - -0.8
1,988,733 + -0.5
1,988,734 - +1.3
1,988,772 + QEN71_RS08845 0.14 -1.7
1,988,781 + QEN71_RS08845 0.16 +0.3
1,988,781 + QEN71_RS08845 0.16 -0.3
1,988,782 - QEN71_RS08845 0.17 +0.8
1,988,782 - QEN71_RS08845 0.17 -0.4
1,988,782 - QEN71_RS08845 0.17 -1.2
1,988,782 - QEN71_RS08845 0.17 +1.2
1,988,782 - QEN71_RS08845 0.17 -0.6
1,988,782 - QEN71_RS08845 0.17 +0.3
1,988,985 + QEN71_RS08845 0.68 -0.3
1,988,985 + QEN71_RS08845 0.68 -0.3
1,988,985 + QEN71_RS08845 0.68 -0.7
1,988,986 - QEN71_RS08845 0.68 -0.7
1,988,986 - QEN71_RS08845 0.68 -1.6
1,988,986 - QEN71_RS08845 0.68 -1.2
1,989,035 + QEN71_RS08845 0.81 +1.1
1,989,035 + QEN71_RS08845 0.81 -1.8
1,989,035 + QEN71_RS08845 0.81 -0.2
1,989,035 + QEN71_RS08845 0.81 -0.2
1,989,036 - QEN71_RS08845 0.81 +0.7
1,989,036 - QEN71_RS08845 0.81 +0.0
1,989,054 + QEN71_RS08845 0.86 -1.6
1,989,055 - QEN71_RS08845 0.86 +0.6
1,989,055 - QEN71_RS08845 0.86 +0.7
1,989,092 + -0.4
1,989,093 - -0.1
1,989,093 - +0.1
1,989,095 + -0.4
1,989,095 + +0.7
1,989,095 + +0.1
1,989,095 + -0.4
1,989,095 + -0.1
1,989,095 + -0.4
1,989,095 + +0.6
1,989,095 + +1.4
1,989,096 - -0.7
1,989,096 - +0.4
1,989,096 - +0.3
1,989,096 - -1.1
1,989,155 + -0.3
1,989,155 + +0.5
1,989,156 - +0.1
1,989,336 + QEN71_RS08850 0.16 +0.1
1,989,460 - QEN71_RS08850 0.29 +0.5

Or see this region's nucleotide sequence