Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07100

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07095 and QEN71_RS07100 are separated by 184 nucleotidesQEN71_RS07100 and QEN71_RS07105 are separated by 94 nucleotidesQEN71_RS07105 and QEN71_RS07110 are separated by 108 nucleotides QEN71_RS07095: QEN71_RS07095 - aldehyde dehydrogenase family protein, at 1,576,580 to 1,578,016 _RS07095 QEN71_RS07100: QEN71_RS07100 - nitronate monooxygenase family protein, at 1,578,201 to 1,579,391 _RS07100 QEN71_RS07105: QEN71_RS07105 - OmpW family outer membrane protein, at 1,579,486 to 1,580,130 _RS07105 QEN71_RS07110: QEN71_RS07110 - DUF1289 domain-containing protein, at 1,580,239 to 1,580,442 _RS07110 Position (kb) 1578 1579 1580Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1577.230 kb on + strand, within QEN71_RS07095at 1577.231 kb on - strand, within QEN71_RS07095at 1577.231 kb on - strand, within QEN71_RS07095at 1577.231 kb on - strand, within QEN71_RS07095at 1577.576 kb on + strand, within QEN71_RS07095at 1577.576 kb on + strand, within QEN71_RS07095at 1577.577 kb on - strand, within QEN71_RS07095at 1577.577 kb on - strand, within QEN71_RS07095at 1577.577 kb on - strand, within QEN71_RS07095at 1577.578 kb on + strand, within QEN71_RS07095at 1577.578 kb on + strand, within QEN71_RS07095at 1577.578 kb on + strand, within QEN71_RS07095at 1577.578 kb on + strand, within QEN71_RS07095at 1577.579 kb on - strand, within QEN71_RS07095at 1577.579 kb on - strand, within QEN71_RS07095at 1577.747 kb on + strand, within QEN71_RS07095at 1577.747 kb on + strand, within QEN71_RS07095at 1577.747 kb on + strand, within QEN71_RS07095at 1577.747 kb on + strand, within QEN71_RS07095at 1577.747 kb on + strand, within QEN71_RS07095at 1577.747 kb on + strand, within QEN71_RS07095at 1577.748 kb on - strand, within QEN71_RS07095at 1577.748 kb on - strand, within QEN71_RS07095at 1577.748 kb on - strand, within QEN71_RS07095at 1577.748 kb on - strand, within QEN71_RS07095at 1577.748 kb on - strand, within QEN71_RS07095at 1577.748 kb on - strand, within QEN71_RS07095at 1577.748 kb on - strand, within QEN71_RS07095at 1577.792 kb on + strand, within QEN71_RS07095at 1577.792 kb on + strand, within QEN71_RS07095at 1577.792 kb on + strand, within QEN71_RS07095at 1577.793 kb on - strand, within QEN71_RS07095at 1577.876 kb on - strandat 1577.896 kb on + strandat 1577.896 kb on + strandat 1577.896 kb on + strandat 1577.897 kb on - strandat 1577.897 kb on - strandat 1577.897 kb on - strandat 1577.897 kb on - strandat 1577.897 kb on - strandat 1577.954 kb on + strandat 1577.954 kb on + strandat 1577.954 kb on + strandat 1577.954 kb on + strandat 1577.955 kb on - strandat 1577.955 kb on - strandat 1577.955 kb on - strandat 1577.969 kb on + strandat 1577.969 kb on + strandat 1577.970 kb on - strandat 1577.978 kb on + strandat 1577.979 kb on - strandat 1578.014 kb on + strandat 1578.014 kb on + strandat 1578.014 kb on + strandat 1578.135 kb on + strandat 1578.135 kb on + strandat 1578.135 kb on + strandat 1578.135 kb on + strandat 1578.136 kb on - strandat 1578.136 kb on - strandat 1578.136 kb on - strandat 1578.136 kb on - strandat 1578.136 kb on - strandat 1578.136 kb on - strandat 1578.136 kb on - strandat 1578.136 kb on - strandat 1578.531 kb on + strand, within QEN71_RS07100at 1578.531 kb on + strand, within QEN71_RS07100at 1578.532 kb on - strand, within QEN71_RS07100at 1578.532 kb on - strand, within QEN71_RS07100at 1578.631 kb on + strand, within QEN71_RS07100at 1578.632 kb on - strand, within QEN71_RS07100at 1578.931 kb on + strand, within QEN71_RS07100at 1578.931 kb on + strand, within QEN71_RS07100at 1578.932 kb on - strand, within QEN71_RS07100at 1578.932 kb on - strand, within QEN71_RS07100at 1579.450 kb on + strandat 1579.480 kb on + strandat 1579.480 kb on + strandat 1579.480 kb on + strandat 1579.481 kb on - strandat 1579.485 kb on + strandat 1579.485 kb on + strandat 1579.485 kb on + strandat 1579.485 kb on + strandat 1579.485 kb on + strandat 1579.486 kb on - strandat 1579.486 kb on - strandat 1579.524 kb on + strandat 1579.524 kb on + strandat 1579.524 kb on + strandat 1579.524 kb on + strandat 1579.525 kb on - strandat 1579.525 kb on - strandat 1579.717 kb on + strand, within QEN71_RS07105at 1579.718 kb on - strand, within QEN71_RS07105at 1579.718 kb on - strand, within QEN71_RS07105at 1579.838 kb on - strand, within QEN71_RS07105at 1579.870 kb on + strand, within QEN71_RS07105at 1579.871 kb on - strand, within QEN71_RS07105at 1579.871 kb on - strand, within QEN71_RS07105at 1579.891 kb on + strand, within QEN71_RS07105at 1579.891 kb on + strand, within QEN71_RS07105at 1579.892 kb on - strand, within QEN71_RS07105at 1579.892 kb on - strand, within QEN71_RS07105at 1579.892 kb on - strand, within QEN71_RS07105at 1579.892 kb on - strand, within QEN71_RS07105at 1579.892 kb on - strand, within QEN71_RS07105at 1579.892 kb on - strand, within QEN71_RS07105at 1579.892 kb on - strand, within QEN71_RS07105at 1579.893 kb on + strand, within QEN71_RS07105at 1579.893 kb on + strand, within QEN71_RS07105at 1579.893 kb on + strand, within QEN71_RS07105at 1579.893 kb on + strand, within QEN71_RS07105at 1579.894 kb on - strand, within QEN71_RS07105at 1579.894 kb on - strand, within QEN71_RS07105at 1579.894 kb on - strand, within QEN71_RS07105at 1579.894 kb on - strand, within QEN71_RS07105at 1579.894 kb on - strand, within QEN71_RS07105at 1579.894 kb on - strand, within QEN71_RS07105at 1579.894 kb on - strand, within QEN71_RS07105at 1579.897 kb on + strand, within QEN71_RS07105at 1579.897 kb on + strand, within QEN71_RS07105at 1579.897 kb on + strand, within QEN71_RS07105at 1579.897 kb on + strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.898 kb on - strand, within QEN71_RS07105at 1579.903 kb on + strand, within QEN71_RS07105at 1579.904 kb on - strand, within QEN71_RS07105at 1579.904 kb on - strand, within QEN71_RS07105at 1580.085 kb on + strandat 1580.175 kb on + strandat 1580.175 kb on + strandat 1580.176 kb on - strandat 1580.176 kb on - strandat 1580.176 kb on - strandat 1580.176 kb on - strandat 1580.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,577,230 + QEN71_RS07095 0.45 -0.5
1,577,231 - QEN71_RS07095 0.45 -0.3
1,577,231 - QEN71_RS07095 0.45 -0.0
1,577,231 - QEN71_RS07095 0.45 -1.6
1,577,576 + QEN71_RS07095 0.69 +0.2
1,577,576 + QEN71_RS07095 0.69 -0.4
1,577,577 - QEN71_RS07095 0.69 -0.3
1,577,577 - QEN71_RS07095 0.69 -0.1
1,577,577 - QEN71_RS07095 0.69 +1.8
1,577,578 + QEN71_RS07095 0.69 +0.6
1,577,578 + QEN71_RS07095 0.69 +0.3
1,577,578 + QEN71_RS07095 0.69 +0.4
1,577,578 + QEN71_RS07095 0.69 -0.0
1,577,579 - QEN71_RS07095 0.70 -3.0
1,577,579 - QEN71_RS07095 0.70 -1.7
1,577,747 + QEN71_RS07095 0.81 +0.2
1,577,747 + QEN71_RS07095 0.81 +0.7
1,577,747 + QEN71_RS07095 0.81 -0.8
1,577,747 + QEN71_RS07095 0.81 +1.1
1,577,747 + QEN71_RS07095 0.81 +0.4
1,577,747 + QEN71_RS07095 0.81 +0.2
1,577,748 - QEN71_RS07095 0.81 -0.3
1,577,748 - QEN71_RS07095 0.81 -0.6
1,577,748 - QEN71_RS07095 0.81 -0.6
1,577,748 - QEN71_RS07095 0.81 -0.9
1,577,748 - QEN71_RS07095 0.81 +1.0
1,577,748 - QEN71_RS07095 0.81 +0.4
1,577,748 - QEN71_RS07095 0.81 -0.6
1,577,792 + QEN71_RS07095 0.84 -0.5
1,577,792 + QEN71_RS07095 0.84 -1.9
1,577,792 + QEN71_RS07095 0.84 -0.5
1,577,793 - QEN71_RS07095 0.84 +0.2
1,577,876 - -0.1
1,577,896 + +1.4
1,577,896 + -0.4
1,577,896 + -1.2
1,577,897 - -0.3
1,577,897 - +1.0
1,577,897 - +0.8
1,577,897 - -0.8
1,577,897 - -1.3
1,577,954 + -1.0
1,577,954 + +0.4
1,577,954 + +0.9
1,577,954 + -2.0
1,577,955 - -0.5
1,577,955 - -0.1
1,577,955 - +0.8
1,577,969 + +0.3
1,577,969 + -0.5
1,577,970 - -1.3
1,577,978 + -0.1
1,577,979 - -1.7
1,578,014 + +0.2
1,578,014 + -0.5
1,578,014 + -0.9
1,578,135 + +0.4
1,578,135 + -0.2
1,578,135 + -0.1
1,578,135 + +0.1
1,578,136 - +0.4
1,578,136 - -0.6
1,578,136 - +1.0
1,578,136 - +0.6
1,578,136 - +0.5
1,578,136 - +0.0
1,578,136 - -0.4
1,578,136 - -0.4
1,578,531 + QEN71_RS07100 0.28 +0.8
1,578,531 + QEN71_RS07100 0.28 -2.2
1,578,532 - QEN71_RS07100 0.28 -0.0
1,578,532 - QEN71_RS07100 0.28 +0.1
1,578,631 + QEN71_RS07100 0.36 -1.9
1,578,632 - QEN71_RS07100 0.36 +2.6
1,578,931 + QEN71_RS07100 0.61 +1.0
1,578,931 + QEN71_RS07100 0.61 +0.1
1,578,932 - QEN71_RS07100 0.61 +0.5
1,578,932 - QEN71_RS07100 0.61 -0.3
1,579,450 + +0.8
1,579,480 + +0.1
1,579,480 + -0.3
1,579,480 + -0.5
1,579,481 - -1.2
1,579,485 + -0.2
1,579,485 + -0.0
1,579,485 + +0.3
1,579,485 + -2.3
1,579,485 + -1.0
1,579,486 - -0.0
1,579,486 - +0.2
1,579,524 + -1.3
1,579,524 + -1.0
1,579,524 + -2.0
1,579,524 + -2.0
1,579,525 - +1.3
1,579,525 - -0.3
1,579,717 + QEN71_RS07105 0.36 -0.6
1,579,718 - QEN71_RS07105 0.36 -1.6
1,579,718 - QEN71_RS07105 0.36 -0.7
1,579,838 - QEN71_RS07105 0.55 -2.6
1,579,870 + QEN71_RS07105 0.60 -1.8
1,579,871 - QEN71_RS07105 0.60 +0.2
1,579,871 - QEN71_RS07105 0.60 -1.9
1,579,891 + QEN71_RS07105 0.63 -0.4
1,579,891 + QEN71_RS07105 0.63 +0.6
1,579,892 - QEN71_RS07105 0.63 +1.1
1,579,892 - QEN71_RS07105 0.63 -0.4
1,579,892 - QEN71_RS07105 0.63 -2.8
1,579,892 - QEN71_RS07105 0.63 -0.5
1,579,892 - QEN71_RS07105 0.63 -0.9
1,579,892 - QEN71_RS07105 0.63 +0.5
1,579,892 - QEN71_RS07105 0.63 -1.1
1,579,893 + QEN71_RS07105 0.63 -0.7
1,579,893 + QEN71_RS07105 0.63 -0.9
1,579,893 + QEN71_RS07105 0.63 +0.3
1,579,893 + QEN71_RS07105 0.63 +0.8
1,579,894 - QEN71_RS07105 0.63 -1.3
1,579,894 - QEN71_RS07105 0.63 -1.9
1,579,894 - QEN71_RS07105 0.63 +0.8
1,579,894 - QEN71_RS07105 0.63 +1.0
1,579,894 - QEN71_RS07105 0.63 +0.5
1,579,894 - QEN71_RS07105 0.63 +0.3
1,579,894 - QEN71_RS07105 0.63 -0.7
1,579,897 + QEN71_RS07105 0.64 -1.5
1,579,897 + QEN71_RS07105 0.64 -1.3
1,579,897 + QEN71_RS07105 0.64 -0.7
1,579,897 + QEN71_RS07105 0.64 -1.7
1,579,898 - QEN71_RS07105 0.64 +0.1
1,579,898 - QEN71_RS07105 0.64 -2.2
1,579,898 - QEN71_RS07105 0.64 -0.3
1,579,898 - QEN71_RS07105 0.64 -0.8
1,579,898 - QEN71_RS07105 0.64 +0.4
1,579,898 - QEN71_RS07105 0.64 +0.7
1,579,898 - QEN71_RS07105 0.64 -0.9
1,579,898 - QEN71_RS07105 0.64 +0.7
1,579,903 + QEN71_RS07105 0.65 +1.0
1,579,904 - QEN71_RS07105 0.65 -0.3
1,579,904 - QEN71_RS07105 0.65 +0.2
1,580,085 + -0.0
1,580,175 + +1.5
1,580,175 + +0.0
1,580,176 - -0.1
1,580,176 - -0.3
1,580,176 - +0.3
1,580,176 - -0.3
1,580,252 + -1.2

Or see this region's nucleotide sequence