Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05835

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05830 and QEN71_RS05835 are separated by 705 nucleotidesQEN71_RS05835 and QEN71_RS05840 are separated by 28 nucleotides QEN71_RS05830: QEN71_RS05830 - peptide chain release factor 2, at 1,292,409 to 1,293,513 _RS05830 QEN71_RS05835: QEN71_RS05835 - single-stranded-DNA-specific exonuclease RecJ, at 1,294,219 to 1,295,925 _RS05835 QEN71_RS05840: QEN71_RS05840 - regulator, at 1,295,954 to 1,297,048 _RS05840 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -2 -1 0 1at 1293.531 kb on - strandat 1293.531 kb on - strandat 1293.531 kb on - strandat 1293.535 kb on - strandat 1293.535 kb on - strandat 1293.535 kb on - strandat 1293.609 kb on - strandat 1294.177 kb on - strandat 1294.177 kb on - strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.221 kb on - strandat 1294.221 kb on - strandat 1294.221 kb on - strandat 1294.221 kb on - strandat 1294.290 kb on - strandat 1294.290 kb on - strandat 1294.290 kb on - strandat 1294.323 kb on + strandat 1294.323 kb on + strandat 1294.323 kb on + strandat 1294.324 kb on - strandat 1294.324 kb on - strandat 1294.499 kb on + strand, within QEN71_RS05835at 1294.499 kb on + strand, within QEN71_RS05835at 1294.499 kb on + strand, within QEN71_RS05835at 1294.499 kb on + strand, within QEN71_RS05835at 1294.500 kb on - strand, within QEN71_RS05835at 1294.500 kb on - strand, within QEN71_RS05835at 1294.500 kb on - strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.517 kb on + strand, within QEN71_RS05835at 1295.591 kb on + strand, within QEN71_RS05835at 1295.592 kb on - strand, within QEN71_RS05835at 1295.615 kb on + strand, within QEN71_RS05835at 1295.615 kb on + strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.687 kb on + strand, within QEN71_RS05835at 1295.687 kb on + strand, within QEN71_RS05835at 1295.688 kb on - strand, within QEN71_RS05835at 1295.688 kb on - strand, within QEN71_RS05835at 1295.963 kb on - strandat 1296.579 kb on + strand, within QEN71_RS05840at 1296.580 kb on - strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.793 kb on - strand, within QEN71_RS05840

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,293,531 - +0.0
1,293,531 - +1.6
1,293,531 - +0.1
1,293,535 - -0.9
1,293,535 - -0.3
1,293,535 - -0.6
1,293,609 - -0.9
1,294,177 - +1.3
1,294,177 - -0.9
1,294,220 + -1.3
1,294,220 + +0.7
1,294,220 + -0.1
1,294,220 + -0.5
1,294,220 + +0.1
1,294,220 + +0.4
1,294,221 - +0.2
1,294,221 - -0.5
1,294,221 - +0.0
1,294,221 - -0.3
1,294,290 - +0.1
1,294,290 - +1.5
1,294,290 - -0.4
1,294,323 + -0.6
1,294,323 + +0.4
1,294,323 + +0.1
1,294,324 - -0.3
1,294,324 - +0.3
1,294,499 + QEN71_RS05835 0.16 -1.1
1,294,499 + QEN71_RS05835 0.16 -0.2
1,294,499 + QEN71_RS05835 0.16 +0.2
1,294,499 + QEN71_RS05835 0.16 -0.8
1,294,500 - QEN71_RS05835 0.16 +0.2
1,294,500 - QEN71_RS05835 0.16 -1.2
1,294,500 - QEN71_RS05835 0.16 -0.7
1,295,330 + QEN71_RS05835 0.65 +0.4
1,295,330 + QEN71_RS05835 0.65 +1.3
1,295,330 + QEN71_RS05835 0.65 -1.0
1,295,330 + QEN71_RS05835 0.65 +0.0
1,295,330 + QEN71_RS05835 0.65 +0.2
1,295,330 + QEN71_RS05835 0.65 -0.6
1,295,330 + QEN71_RS05835 0.65 -0.6
1,295,330 + QEN71_RS05835 0.65 -1.0
1,295,330 + QEN71_RS05835 0.65 -1.7
1,295,330 + QEN71_RS05835 0.65 +0.4
1,295,330 + QEN71_RS05835 0.65 +0.4
1,295,330 + QEN71_RS05835 0.65 +0.8
1,295,330 + QEN71_RS05835 0.65 -0.2
1,295,330 + QEN71_RS05835 0.65 +1.2
1,295,330 + QEN71_RS05835 0.65 -0.3
1,295,330 + QEN71_RS05835 0.65 +0.7
1,295,330 + QEN71_RS05835 0.65 -0.6
1,295,330 + QEN71_RS05835 0.65 -0.4
1,295,330 + QEN71_RS05835 0.65 -2.5
1,295,330 + QEN71_RS05835 0.65 -0.6
1,295,330 + QEN71_RS05835 0.65 -0.0
1,295,330 + QEN71_RS05835 0.65 -0.3
1,295,330 + QEN71_RS05835 0.65 -0.8
1,295,331 - QEN71_RS05835 0.65 +0.3
1,295,331 - QEN71_RS05835 0.65 -0.7
1,295,331 - QEN71_RS05835 0.65 -1.0
1,295,331 - QEN71_RS05835 0.65 +0.7
1,295,331 - QEN71_RS05835 0.65 +1.1
1,295,331 - QEN71_RS05835 0.65 +0.4
1,295,331 - QEN71_RS05835 0.65 -1.1
1,295,331 - QEN71_RS05835 0.65 +1.2
1,295,331 - QEN71_RS05835 0.65 -0.0
1,295,331 - QEN71_RS05835 0.65 -1.0
1,295,331 - QEN71_RS05835 0.65 -0.7
1,295,331 - QEN71_RS05835 0.65 +1.0
1,295,517 + QEN71_RS05835 0.76 +0.9
1,295,591 + QEN71_RS05835 0.80 -0.1
1,295,592 - QEN71_RS05835 0.80 -0.0
1,295,615 + QEN71_RS05835 0.82 -2.3
1,295,615 + QEN71_RS05835 0.82 -0.5
1,295,616 - QEN71_RS05835 0.82 -0.1
1,295,616 - QEN71_RS05835 0.82 -1.9
1,295,616 - QEN71_RS05835 0.82 -0.5
1,295,616 - QEN71_RS05835 0.82 -0.1
1,295,687 + QEN71_RS05835 0.86 -0.3
1,295,687 + QEN71_RS05835 0.86 -0.5
1,295,688 - QEN71_RS05835 0.86 +1.7
1,295,688 - QEN71_RS05835 0.86 +0.7
1,295,963 - -0.2
1,296,579 + QEN71_RS05840 0.57 -1.0
1,296,580 - QEN71_RS05840 0.57 -1.2
1,296,792 + QEN71_RS05840 0.77 -0.6
1,296,792 + QEN71_RS05840 0.77 -2.0
1,296,792 + QEN71_RS05840 0.77 -1.2
1,296,793 - QEN71_RS05840 0.77 +0.7

Or see this region's nucleotide sequence