Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04260 and QEN71_RS04265 overlap by 20 nucleotides QEN71_RS04265 and QEN71_RS04270 are separated by 220 nucleotides QEN71_RS04270 and QEN71_RS04275 are separated by 620 nucleotides
QEN71_RS04260: QEN71_RS04260 - molybdopterin adenylyltransferase, at 938,510 to 939,136
_RS04260
QEN71_RS04265: QEN71_RS04265 - ribosome biogenesis factor YjgA, at 939,117 to 939,728
_RS04265
QEN71_RS04270: QEN71_RS04270 - metalloprotease PmbA, at 939,949 to 941,319
_RS04270
QEN71_RS04275: QEN71_RS04275 - dihydrofolate reductase, at 941,940 to 942,440
_RS04275
Position (kb) 939
940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.972 kb on + strand, within QEN71_RS04260 at 938.972 kb on + strand, within QEN71_RS04260 at 938.972 kb on + strand, within QEN71_RS04260 at 938.972 kb on + strand, within QEN71_RS04260 at 938.972 kb on + strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 938.973 kb on - strand, within QEN71_RS04260 at 939.054 kb on + strand, within QEN71_RS04260 at 939.054 kb on + strand, within QEN71_RS04260 at 939.054 kb on + strand, within QEN71_RS04260 at 939.054 kb on + strand, within QEN71_RS04260 at 939.055 kb on - strand, within QEN71_RS04260 at 939.055 kb on - strand, within QEN71_RS04260 at 939.118 kb on + strand at 939.118 kb on + strand at 939.118 kb on + strand at 939.118 kb on + strand at 939.118 kb on + strand at 939.118 kb on + strand at 939.118 kb on + strand at 939.119 kb on - strand at 939.119 kb on - strand at 939.365 kb on + strand, within QEN71_RS04265 at 939.365 kb on + strand, within QEN71_RS04265 at 939.366 kb on - strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.415 kb on + strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.416 kb on - strand, within QEN71_RS04265 at 939.484 kb on + strand, within QEN71_RS04265 at 939.484 kb on + strand, within QEN71_RS04265 at 939.484 kb on + strand, within QEN71_RS04265 at 939.484 kb on + strand, within QEN71_RS04265 at 939.484 kb on + strand, within QEN71_RS04265 at 939.484 kb on + strand, within QEN71_RS04265 at 939.484 kb on + strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.485 kb on - strand, within QEN71_RS04265 at 939.606 kb on + strand, within QEN71_RS04265 at 939.607 kb on - strand, within QEN71_RS04265 at 939.667 kb on + strand at 939.668 kb on - strand at 939.668 kb on - strand at 939.668 kb on - strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.740 kb on + strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.741 kb on - strand at 939.771 kb on + strand at 939.772 kb on - strand at 939.772 kb on - strand at 939.772 kb on - strand at 939.790 kb on + strand at 939.790 kb on + strand at 939.790 kb on + strand at 939.791 kb on - strand at 939.791 kb on - strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.838 kb on + strand at 939.839 kb on - strand at 939.839 kb on - strand at 939.839 kb on - strand at 939.839 kb on - strand at 939.839 kb on - strand at 939.839 kb on - strand at 939.839 kb on - strand at 939.839 kb on - strand at 939.990 kb on + strand at 939.990 kb on + strand at 939.990 kb on + strand at 939.990 kb on + strand at 939.990 kb on + strand at 939.991 kb on - strand at 939.991 kb on - strand at 940.243 kb on + strand, within QEN71_RS04270 at 940.243 kb on + strand, within QEN71_RS04270 at 940.243 kb on + strand, within QEN71_RS04270 at 940.243 kb on + strand, within QEN71_RS04270 at 940.244 kb on - strand, within QEN71_RS04270 at 940.244 kb on - strand, within QEN71_RS04270 at 940.333 kb on + strand, within QEN71_RS04270 at 940.334 kb on - strand, within QEN71_RS04270 at 940.334 kb on - strand, within QEN71_RS04270 at 940.334 kb on - strand, within QEN71_RS04270 at 940.505 kb on - strand, within QEN71_RS04270 at 940.516 kb on + strand, within QEN71_RS04270 at 940.516 kb on + strand, within QEN71_RS04270 at 940.516 kb on + strand, within QEN71_RS04270 at 940.517 kb on - strand, within QEN71_RS04270 at 940.533 kb on + strand, within QEN71_RS04270 at 940.533 kb on + strand, within QEN71_RS04270 at 940.533 kb on + strand, within QEN71_RS04270 at 940.533 kb on + strand, within QEN71_RS04270 at 940.533 kb on + strand, within QEN71_RS04270 at 940.573 kb on + strand, within QEN71_RS04270 at 940.573 kb on + strand, within QEN71_RS04270 at 940.627 kb on + strand, within QEN71_RS04270 at 940.933 kb on + strand, within QEN71_RS04270 at 940.933 kb on + strand, within QEN71_RS04270 at 940.933 kb on + strand, within QEN71_RS04270 at 940.934 kb on - strand, within QEN71_RS04270 at 940.934 kb on - strand, within QEN71_RS04270 at 940.934 kb on - strand, within QEN71_RS04270 at 940.934 kb on - strand, within QEN71_RS04270 at 940.948 kb on + strand, within QEN71_RS04270 at 940.949 kb on - strand, within QEN71_RS04270 at 940.949 kb on - strand, within QEN71_RS04270 at 940.949 kb on - strand, within QEN71_RS04270 at 941.001 kb on + strand, within QEN71_RS04270 at 941.001 kb on + strand, within QEN71_RS04270 at 941.002 kb on - strand, within QEN71_RS04270 at 941.113 kb on + strand, within QEN71_RS04270 at 941.114 kb on - strand, within QEN71_RS04270 at 941.114 kb on - strand, within QEN71_RS04270 at 941.114 kb on - strand, within QEN71_RS04270 at 941.114 kb on - strand, within QEN71_RS04270 at 941.114 kb on - strand, within QEN71_RS04270 at 941.128 kb on + strand, within QEN71_RS04270 at 941.129 kb on - strand, within QEN71_RS04270 at 941.129 kb on - strand, within QEN71_RS04270 at 941.193 kb on + strand at 941.194 kb on - strand at 941.239 kb on - strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.253 kb on + strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.254 kb on - strand at 941.341 kb on - strand at 941.341 kb on - strand at 941.630 kb on - strand at 941.630 kb on - strand at 941.630 kb on - strand at 941.630 kb on - strand at 941.630 kb on - strand at 941.630 kb on - strand at 941.630 kb on - strand at 941.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 938,972 + QEN71_RS04260 0.74 +0.3 938,972 + QEN71_RS04260 0.74 +0.2 938,972 + QEN71_RS04260 0.74 -1.2 938,972 + QEN71_RS04260 0.74 +0.8 938,972 + QEN71_RS04260 0.74 +1.5 938,973 - QEN71_RS04260 0.74 +0.9 938,973 - QEN71_RS04260 0.74 +1.0 938,973 - QEN71_RS04260 0.74 -0.2 938,973 - QEN71_RS04260 0.74 +0.2 938,973 - QEN71_RS04260 0.74 -2.1 938,973 - QEN71_RS04260 0.74 -0.6 938,973 - QEN71_RS04260 0.74 +0.2 938,973 - QEN71_RS04260 0.74 +0.0 938,973 - QEN71_RS04260 0.74 +1.9 938,973 - QEN71_RS04260 0.74 +0.9 939,054 + QEN71_RS04260 0.87 -0.1 939,054 + QEN71_RS04260 0.87 -0.3 939,054 + QEN71_RS04260 0.87 +1.1 939,054 + QEN71_RS04260 0.87 +0.7 939,055 - QEN71_RS04260 0.87 -0.4 939,055 - QEN71_RS04260 0.87 +0.6 939,118 + -0.4 939,118 + -0.7 939,118 + +0.6 939,118 + -1.7 939,118 + +0.5 939,118 + -0.0 939,118 + +0.0 939,119 - -0.7 939,119 - +0.5 939,365 + QEN71_RS04265 0.41 -0.8 939,365 + QEN71_RS04265 0.41 +0.1 939,366 - QEN71_RS04265 0.41 -0.9 939,415 + QEN71_RS04265 0.49 -2.2 939,415 + QEN71_RS04265 0.49 -0.8 939,415 + QEN71_RS04265 0.49 -2.0 939,415 + QEN71_RS04265 0.49 +0.5 939,415 + QEN71_RS04265 0.49 -0.2 939,415 + QEN71_RS04265 0.49 -0.7 939,415 + QEN71_RS04265 0.49 -0.7 939,415 + QEN71_RS04265 0.49 -0.3 939,415 + QEN71_RS04265 0.49 -0.1 939,415 + QEN71_RS04265 0.49 +1.2 939,415 + QEN71_RS04265 0.49 -1.3 939,415 + QEN71_RS04265 0.49 -0.4 939,415 + QEN71_RS04265 0.49 -0.2 939,415 + QEN71_RS04265 0.49 -1.8 939,415 + QEN71_RS04265 0.49 -0.6 939,415 + QEN71_RS04265 0.49 -0.6 939,415 + QEN71_RS04265 0.49 -1.7 939,415 + QEN71_RS04265 0.49 +0.3 939,415 + QEN71_RS04265 0.49 -1.2 939,415 + QEN71_RS04265 0.49 -0.2 939,416 - QEN71_RS04265 0.49 +0.1 939,416 - QEN71_RS04265 0.49 -2.3 939,416 - QEN71_RS04265 0.49 -0.5 939,416 - QEN71_RS04265 0.49 -0.0 939,416 - QEN71_RS04265 0.49 -0.0 939,416 - QEN71_RS04265 0.49 -1.6 939,416 - QEN71_RS04265 0.49 +0.6 939,416 - QEN71_RS04265 0.49 -1.7 939,416 - QEN71_RS04265 0.49 -0.2 939,416 - QEN71_RS04265 0.49 +0.6 939,416 - QEN71_RS04265 0.49 -0.3 939,416 - QEN71_RS04265 0.49 -0.5 939,416 - QEN71_RS04265 0.49 -0.4 939,416 - QEN71_RS04265 0.49 -0.1 939,416 - QEN71_RS04265 0.49 -0.9 939,484 + QEN71_RS04265 0.60 -0.9 939,484 + QEN71_RS04265 0.60 -1.2 939,484 + QEN71_RS04265 0.60 -2.3 939,484 + QEN71_RS04265 0.60 -0.4 939,484 + QEN71_RS04265 0.60 -1.6 939,484 + QEN71_RS04265 0.60 -2.0 939,484 + QEN71_RS04265 0.60 -0.9 939,485 - QEN71_RS04265 0.60 -0.7 939,485 - QEN71_RS04265 0.60 -2.3 939,485 - QEN71_RS04265 0.60 -0.7 939,485 - QEN71_RS04265 0.60 -1.3 939,485 - QEN71_RS04265 0.60 -0.9 939,485 - QEN71_RS04265 0.60 -2.0 939,485 - QEN71_RS04265 0.60 -2.0 939,485 - QEN71_RS04265 0.60 -1.8 939,485 - QEN71_RS04265 0.60 -2.1 939,606 + QEN71_RS04265 0.80 -0.1 939,607 - QEN71_RS04265 0.80 +0.3 939,667 + -1.5 939,668 - +1.6 939,668 - +0.1 939,668 - -1.4 939,740 + -0.5 939,740 + +0.9 939,740 + +0.9 939,740 + -1.4 939,740 + +0.2 939,740 + +0.6 939,740 + +0.8 939,740 + +0.3 939,740 + -0.9 939,740 + -0.2 939,740 + -1.5 939,740 + -0.4 939,740 + -0.4 939,741 - -1.0 939,741 - -1.7 939,741 - -1.8 939,741 - -1.6 939,741 - -0.9 939,741 - -1.1 939,741 - +0.0 939,741 - +0.1 939,741 - -0.4 939,741 - +0.0 939,771 + -0.3 939,772 - -1.4 939,772 - -0.7 939,772 - -0.4 939,790 + -1.2 939,790 + -2.0 939,790 + -0.4 939,791 - +0.3 939,791 - -1.4 939,818 + -1.2 939,818 + -1.3 939,818 + +0.3 939,819 - -0.1 939,819 - +0.1 939,819 - +0.8 939,819 - -0.1 939,819 - +0.5 939,819 - -0.1 939,838 + +0.2 939,838 + -0.9 939,838 + +0.9 939,838 + -0.7 939,838 + -0.5 939,838 + -0.7 939,838 + +0.3 939,838 + -0.3 939,838 + +1.1 939,838 + +0.2 939,838 + -0.6 939,838 + +0.1 939,838 + +1.3 939,839 - -1.8 939,839 - -0.0 939,839 - -0.7 939,839 - -0.1 939,839 - +0.5 939,839 - +0.3 939,839 - -0.4 939,839 - -1.8 939,990 + -2.1 939,990 + -0.7 939,990 + -3.1 939,990 + -1.3 939,990 + -0.7 939,991 - -1.3 939,991 - -1.4 940,243 + QEN71_RS04270 0.21 -1.8 940,243 + QEN71_RS04270 0.21 -1.5 940,243 + QEN71_RS04270 0.21 -0.9 940,243 + QEN71_RS04270 0.21 -1.7 940,244 - QEN71_RS04270 0.22 -1.6 940,244 - QEN71_RS04270 0.22 -0.1 940,333 + QEN71_RS04270 0.28 -1.1 940,334 - QEN71_RS04270 0.28 +0.5 940,334 - QEN71_RS04270 0.28 -2.6 940,334 - QEN71_RS04270 0.28 +0.4 940,505 - QEN71_RS04270 0.41 -0.1 940,516 + QEN71_RS04270 0.41 -0.1 940,516 + QEN71_RS04270 0.41 -1.5 940,516 + QEN71_RS04270 0.41 -2.5 940,517 - QEN71_RS04270 0.41 -1.4 940,533 + QEN71_RS04270 0.43 +0.2 940,533 + QEN71_RS04270 0.43 -0.1 940,533 + QEN71_RS04270 0.43 -0.8 940,533 + QEN71_RS04270 0.43 -0.5 940,533 + QEN71_RS04270 0.43 -0.7 940,573 + QEN71_RS04270 0.46 -0.1 940,573 + QEN71_RS04270 0.46 -1.7 940,627 + QEN71_RS04270 0.49 +1.3 940,933 + QEN71_RS04270 0.72 -0.4 940,933 + QEN71_RS04270 0.72 +0.1 940,933 + QEN71_RS04270 0.72 -0.1 940,934 - QEN71_RS04270 0.72 +0.6 940,934 - QEN71_RS04270 0.72 -2.0 940,934 - QEN71_RS04270 0.72 -0.4 940,934 - QEN71_RS04270 0.72 -2.0 940,948 + QEN71_RS04270 0.73 -1.3 940,949 - QEN71_RS04270 0.73 -0.7 940,949 - QEN71_RS04270 0.73 -1.5 940,949 - QEN71_RS04270 0.73 -1.5 941,001 + QEN71_RS04270 0.77 -1.1 941,001 + QEN71_RS04270 0.77 -0.4 941,002 - QEN71_RS04270 0.77 -1.1 941,113 + QEN71_RS04270 0.85 -0.3 941,114 - QEN71_RS04270 0.85 -2.9 941,114 - QEN71_RS04270 0.85 -0.9 941,114 - QEN71_RS04270 0.85 +0.6 941,114 - QEN71_RS04270 0.85 +1.6 941,114 - QEN71_RS04270 0.85 +0.6 941,128 + QEN71_RS04270 0.86 +2.2 941,129 - QEN71_RS04270 0.86 -2.1 941,129 - QEN71_RS04270 0.86 -1.7 941,193 + +0.4 941,194 - -1.3 941,239 - -2.1 941,253 + -0.4 941,253 + -1.9 941,253 + -1.0 941,253 + -1.5 941,253 + -1.5 941,253 + +0.1 941,253 + -0.4 941,253 + -0.7 941,253 + -1.9 941,253 + -0.8 941,253 + -1.2 941,253 + -0.7 941,253 + -0.1 941,253 + +0.9 941,254 - +0.5 941,254 - -0.4 941,254 - -0.4 941,254 - -1.3 941,254 - -1.3 941,254 - -0.7 941,254 - -2.2 941,254 - -0.4 941,254 - -2.3 941,254 - +0.6 941,254 - -1.0 941,254 - -1.9 941,254 - -2.5 941,254 - -1.5 941,341 - -1.4 941,341 - -0.7 941,630 - -0.4 941,630 - +0.1 941,630 - +0.2 941,630 - +0.9 941,630 - -0.1 941,630 - +0.4 941,630 - -1.4 941,734 + -0.6
Or see this region's nucleotide sequence