Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02550 and QEN71_RS02555 are separated by 196 nucleotides QEN71_RS02555 and QEN71_RS02560 are separated by 12 nucleotides QEN71_RS02560 and QEN71_RS02565 are separated by 74 nucleotides
QEN71_RS02550: QEN71_RS02550 - FGGY family carbohydrate kinase, at 571,999 to 573,423
_RS02550
QEN71_RS02555: QEN71_RS02555 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 573,620 to 574,726
_RS02555
QEN71_RS02560: QEN71_RS02560 - S-formylglutathione hydrolase, at 574,739 to 575,584
_RS02560
QEN71_RS02565: QEN71_RS02565 - metal ABC transporter permease, at 575,659 to 576,450
_RS02565
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1 at 572.734 kb on - strand, within QEN71_RS02550 at 572.734 kb on - strand, within QEN71_RS02550 at 572.803 kb on + strand, within QEN71_RS02550 at 572.804 kb on - strand, within QEN71_RS02550 at 572.890 kb on + strand, within QEN71_RS02550 at 572.890 kb on + strand, within QEN71_RS02550 at 572.890 kb on + strand, within QEN71_RS02550 at 572.890 kb on + strand, within QEN71_RS02550 at 572.890 kb on + strand, within QEN71_RS02550 at 572.890 kb on + strand, within QEN71_RS02550 at 572.891 kb on - strand, within QEN71_RS02550 at 572.891 kb on - strand, within QEN71_RS02550 at 572.891 kb on - strand, within QEN71_RS02550 at 572.891 kb on - strand, within QEN71_RS02550 at 572.891 kb on - strand, within QEN71_RS02550 at 572.891 kb on - strand, within QEN71_RS02550 at 572.891 kb on - strand, within QEN71_RS02550 at 572.892 kb on - strand, within QEN71_RS02550 at 572.959 kb on + strand, within QEN71_RS02550 at 572.959 kb on + strand, within QEN71_RS02550 at 572.959 kb on + strand, within QEN71_RS02550 at 572.960 kb on - strand, within QEN71_RS02550 at 572.960 kb on - strand, within QEN71_RS02550 at 572.960 kb on - strand, within QEN71_RS02550 at 573.262 kb on - strand, within QEN71_RS02550 at 573.361 kb on + strand at 573.362 kb on - strand at 573.587 kb on + strand at 573.587 kb on + strand at 573.587 kb on + strand at 573.588 kb on - strand at 573.588 kb on - strand at 573.588 kb on - strand at 573.588 kb on - strand at 573.588 kb on - strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.604 kb on + strand at 573.605 kb on - strand at 573.605 kb on - strand at 573.605 kb on - strand at 573.605 kb on - strand at 573.749 kb on + strand, within QEN71_RS02555 at 573.749 kb on + strand, within QEN71_RS02555 at 573.749 kb on + strand, within QEN71_RS02555 at 573.749 kb on + strand, within QEN71_RS02555 at 573.749 kb on + strand, within QEN71_RS02555 at 573.750 kb on - strand, within QEN71_RS02555 at 573.750 kb on - strand, within QEN71_RS02555 at 573.750 kb on - strand, within QEN71_RS02555 at 573.750 kb on - strand, within QEN71_RS02555 at 573.750 kb on - strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.752 kb on + strand, within QEN71_RS02555 at 573.753 kb on - strand, within QEN71_RS02555 at 573.753 kb on - strand, within QEN71_RS02555 at 573.753 kb on - strand, within QEN71_RS02555 at 573.753 kb on - strand, within QEN71_RS02555 at 573.753 kb on - strand, within QEN71_RS02555 at 573.753 kb on - strand, within QEN71_RS02555 at 573.753 kb on - strand, within QEN71_RS02555 at 573.882 kb on - strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.022 kb on + strand, within QEN71_RS02555 at 574.023 kb on - strand, within QEN71_RS02555 at 574.023 kb on - strand, within QEN71_RS02555 at 574.023 kb on - strand, within QEN71_RS02555 at 574.023 kb on - strand, within QEN71_RS02555 at 574.023 kb on - strand, within QEN71_RS02555 at 574.023 kb on - strand, within QEN71_RS02555 at 574.049 kb on + strand, within QEN71_RS02555 at 574.049 kb on + strand, within QEN71_RS02555 at 574.049 kb on + strand, within QEN71_RS02555 at 574.050 kb on - strand, within QEN71_RS02555 at 574.050 kb on - strand, within QEN71_RS02555 at 574.050 kb on - strand, within QEN71_RS02555 at 574.050 kb on - strand, within QEN71_RS02555 at 574.050 kb on - strand, within QEN71_RS02555 at 574.050 kb on - strand, within QEN71_RS02555 at 574.115 kb on + strand, within QEN71_RS02555 at 574.115 kb on + strand, within QEN71_RS02555 at 574.115 kb on + strand, within QEN71_RS02555 at 574.115 kb on + strand, within QEN71_RS02555 at 574.116 kb on - strand, within QEN71_RS02555 at 574.116 kb on - strand, within QEN71_RS02555 at 574.116 kb on - strand, within QEN71_RS02555 at 574.158 kb on - strand, within QEN71_RS02555 at 574.360 kb on + strand, within QEN71_RS02555 at 574.361 kb on - strand, within QEN71_RS02555 at 574.361 kb on - strand, within QEN71_RS02555 at 574.361 kb on - strand, within QEN71_RS02555 at 574.391 kb on + strand, within QEN71_RS02555 at 574.391 kb on + strand, within QEN71_RS02555 at 574.391 kb on + strand, within QEN71_RS02555 at 574.392 kb on - strand, within QEN71_RS02555 at 574.392 kb on - strand, within QEN71_RS02555 at 574.392 kb on - strand, within QEN71_RS02555 at 574.392 kb on - strand, within QEN71_RS02555 at 574.392 kb on - strand, within QEN71_RS02555 at 574.392 kb on - strand, within QEN71_RS02555 at 574.604 kb on + strand, within QEN71_RS02555 at 574.604 kb on + strand, within QEN71_RS02555 at 574.605 kb on - strand, within QEN71_RS02555 at 574.605 kb on - strand, within QEN71_RS02555 at 574.605 kb on - strand, within QEN71_RS02555 at 574.605 kb on - strand, within QEN71_RS02555 at 574.605 kb on - strand, within QEN71_RS02555 at 574.625 kb on - strand at 574.721 kb on + strand at 574.721 kb on + strand at 574.721 kb on + strand at 574.721 kb on + strand at 574.721 kb on + strand at 574.722 kb on - strand at 574.722 kb on - strand at 574.722 kb on - strand at 574.722 kb on - strand at 574.722 kb on - strand at 574.722 kb on - strand at 574.722 kb on - strand at 574.724 kb on + strand at 574.724 kb on + strand at 574.724 kb on + strand at 574.725 kb on - strand at 574.725 kb on - strand at 574.725 kb on - strand at 574.725 kb on - strand at 574.786 kb on + strand at 574.786 kb on + strand at 574.786 kb on + strand at 574.787 kb on - strand at 574.787 kb on - strand at 574.787 kb on - strand at 574.787 kb on - strand at 574.790 kb on + strand at 574.790 kb on + strand at 574.790 kb on + strand at 574.790 kb on + strand at 574.790 kb on + strand at 574.790 kb on + strand at 574.791 kb on - strand at 574.791 kb on - strand at 574.791 kb on - strand at 574.791 kb on - strand at 574.791 kb on - strand at 574.791 kb on - strand at 574.791 kb on - strand at 574.883 kb on + strand, within QEN71_RS02560 at 574.884 kb on - strand, within QEN71_RS02560 at 574.884 kb on - strand, within QEN71_RS02560 at 574.884 kb on - strand, within QEN71_RS02560 at 575.051 kb on + strand, within QEN71_RS02560 at 575.051 kb on + strand, within QEN71_RS02560 at 575.051 kb on + strand, within QEN71_RS02560 at 575.051 kb on + strand, within QEN71_RS02560 at 575.051 kb on + strand, within QEN71_RS02560 at 575.052 kb on - strand, within QEN71_RS02560 at 575.052 kb on - strand, within QEN71_RS02560 at 575.052 kb on - strand, within QEN71_RS02560 at 575.052 kb on - strand, within QEN71_RS02560 at 575.052 kb on - strand, within QEN71_RS02560 at 575.096 kb on + strand, within QEN71_RS02560 at 575.096 kb on + strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.097 kb on - strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.102 kb on + strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.103 kb on - strand, within QEN71_RS02560 at 575.339 kb on + strand, within QEN71_RS02560 at 575.339 kb on + strand, within QEN71_RS02560 at 575.339 kb on + strand, within QEN71_RS02560 at 575.339 kb on + strand, within QEN71_RS02560 at 575.339 kb on + strand, within QEN71_RS02560 at 575.339 kb on + strand, within QEN71_RS02560 at 575.339 kb on + strand, within QEN71_RS02560 at 575.340 kb on - strand, within QEN71_RS02560 at 575.340 kb on - strand, within QEN71_RS02560 at 575.340 kb on - strand, within QEN71_RS02560 at 575.340 kb on - strand, within QEN71_RS02560 at 575.340 kb on - strand, within QEN71_RS02560 at 575.340 kb on - strand, within QEN71_RS02560 at 575.507 kb on + strand at 575.507 kb on + strand at 575.519 kb on + strand at 575.519 kb on + strand at 575.520 kb on - strand at 575.605 kb on + strand at 575.605 kb on + strand at 575.628 kb on - strand at 575.628 kb on - strand at 575.649 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 572,734 - QEN71_RS02550 0.52 -0.3 572,734 - QEN71_RS02550 0.52 -0.5 572,803 + QEN71_RS02550 0.56 +0.3 572,804 - QEN71_RS02550 0.56 -1.3 572,890 + QEN71_RS02550 0.63 -0.2 572,890 + QEN71_RS02550 0.63 -1.6 572,890 + QEN71_RS02550 0.63 -1.5 572,890 + QEN71_RS02550 0.63 -0.3 572,890 + QEN71_RS02550 0.63 -0.2 572,890 + QEN71_RS02550 0.63 +0.2 572,891 - QEN71_RS02550 0.63 -0.4 572,891 - QEN71_RS02550 0.63 +1.7 572,891 - QEN71_RS02550 0.63 -0.7 572,891 - QEN71_RS02550 0.63 -1.6 572,891 - QEN71_RS02550 0.63 -0.0 572,891 - QEN71_RS02550 0.63 +0.0 572,891 - QEN71_RS02550 0.63 +0.4 572,892 - QEN71_RS02550 0.63 -1.3 572,959 + QEN71_RS02550 0.67 -0.9 572,959 + QEN71_RS02550 0.67 -0.2 572,959 + QEN71_RS02550 0.67 +0.1 572,960 - QEN71_RS02550 0.67 +0.1 572,960 - QEN71_RS02550 0.67 -0.0 572,960 - QEN71_RS02550 0.67 +0.0 573,262 - QEN71_RS02550 0.89 -0.5 573,361 + -0.0 573,362 - +1.5 573,587 + -0.2 573,587 + +1.0 573,587 + +0.3 573,588 - -1.0 573,588 - -1.3 573,588 - -1.6 573,588 - -0.4 573,588 - -0.2 573,604 + +0.0 573,604 + -0.0 573,604 + +0.5 573,604 + -0.8 573,604 + +0.1 573,604 + -0.5 573,604 + -0.6 573,604 + +0.2 573,604 + -0.2 573,604 + +0.2 573,605 - +1.3 573,605 - -0.6 573,605 - +0.6 573,605 - +0.1 573,749 + QEN71_RS02555 0.12 -0.6 573,749 + QEN71_RS02555 0.12 -1.2 573,749 + QEN71_RS02555 0.12 -1.0 573,749 + QEN71_RS02555 0.12 +0.5 573,749 + QEN71_RS02555 0.12 -0.8 573,750 - QEN71_RS02555 0.12 -0.1 573,750 - QEN71_RS02555 0.12 +1.0 573,750 - QEN71_RS02555 0.12 +1.4 573,750 - QEN71_RS02555 0.12 +1.1 573,750 - QEN71_RS02555 0.12 +0.0 573,752 + QEN71_RS02555 0.12 -0.2 573,752 + QEN71_RS02555 0.12 -0.4 573,752 + QEN71_RS02555 0.12 +0.5 573,752 + QEN71_RS02555 0.12 -0.0 573,752 + QEN71_RS02555 0.12 +0.8 573,752 + QEN71_RS02555 0.12 -0.2 573,752 + QEN71_RS02555 0.12 +0.6 573,752 + QEN71_RS02555 0.12 -0.6 573,752 + QEN71_RS02555 0.12 +0.6 573,752 + QEN71_RS02555 0.12 +0.2 573,752 + QEN71_RS02555 0.12 -0.5 573,752 + QEN71_RS02555 0.12 -0.2 573,752 + QEN71_RS02555 0.12 -0.2 573,753 - QEN71_RS02555 0.12 +0.6 573,753 - QEN71_RS02555 0.12 -2.2 573,753 - QEN71_RS02555 0.12 -0.2 573,753 - QEN71_RS02555 0.12 +0.5 573,753 - QEN71_RS02555 0.12 -0.6 573,753 - QEN71_RS02555 0.12 -0.2 573,753 - QEN71_RS02555 0.12 -0.8 573,882 - QEN71_RS02555 0.24 -2.2 574,022 + QEN71_RS02555 0.36 -1.5 574,022 + QEN71_RS02555 0.36 -0.1 574,022 + QEN71_RS02555 0.36 -0.4 574,022 + QEN71_RS02555 0.36 +0.9 574,022 + QEN71_RS02555 0.36 -0.5 574,022 + QEN71_RS02555 0.36 -0.0 574,022 + QEN71_RS02555 0.36 -1.2 574,022 + QEN71_RS02555 0.36 -1.7 574,023 - QEN71_RS02555 0.36 -0.9 574,023 - QEN71_RS02555 0.36 +0.4 574,023 - QEN71_RS02555 0.36 -0.4 574,023 - QEN71_RS02555 0.36 +1.3 574,023 - QEN71_RS02555 0.36 -0.2 574,023 - QEN71_RS02555 0.36 -0.6 574,049 + QEN71_RS02555 0.39 -0.2 574,049 + QEN71_RS02555 0.39 -0.2 574,049 + QEN71_RS02555 0.39 +0.9 574,050 - QEN71_RS02555 0.39 -1.7 574,050 - QEN71_RS02555 0.39 +0.4 574,050 - QEN71_RS02555 0.39 -0.2 574,050 - QEN71_RS02555 0.39 -1.3 574,050 - QEN71_RS02555 0.39 +0.5 574,050 - QEN71_RS02555 0.39 -1.2 574,115 + QEN71_RS02555 0.45 +0.1 574,115 + QEN71_RS02555 0.45 -0.2 574,115 + QEN71_RS02555 0.45 -0.7 574,115 + QEN71_RS02555 0.45 -0.3 574,116 - QEN71_RS02555 0.45 +0.9 574,116 - QEN71_RS02555 0.45 +0.2 574,116 - QEN71_RS02555 0.45 -1.5 574,158 - QEN71_RS02555 0.49 +1.3 574,360 + QEN71_RS02555 0.67 -0.5 574,361 - QEN71_RS02555 0.67 -0.2 574,361 - QEN71_RS02555 0.67 -0.5 574,361 - QEN71_RS02555 0.67 -0.3 574,391 + QEN71_RS02555 0.70 -0.7 574,391 + QEN71_RS02555 0.70 +0.5 574,391 + QEN71_RS02555 0.70 -1.7 574,392 - QEN71_RS02555 0.70 -0.2 574,392 - QEN71_RS02555 0.70 +0.3 574,392 - QEN71_RS02555 0.70 -0.1 574,392 - QEN71_RS02555 0.70 +0.1 574,392 - QEN71_RS02555 0.70 +0.1 574,392 - QEN71_RS02555 0.70 +0.2 574,604 + QEN71_RS02555 0.89 -0.6 574,604 + QEN71_RS02555 0.89 -0.7 574,605 - QEN71_RS02555 0.89 -0.5 574,605 - QEN71_RS02555 0.89 +1.1 574,605 - QEN71_RS02555 0.89 +0.0 574,605 - QEN71_RS02555 0.89 +0.8 574,605 - QEN71_RS02555 0.89 -0.4 574,625 - -0.3 574,721 + -0.4 574,721 + -0.8 574,721 + -0.6 574,721 + -0.5 574,721 + -0.3 574,722 - +1.6 574,722 - +0.3 574,722 - +0.5 574,722 - -0.4 574,722 - -0.5 574,722 - -0.7 574,722 - +0.1 574,724 + +0.4 574,724 + +0.6 574,724 + -0.4 574,725 - +0.2 574,725 - +0.0 574,725 - +0.0 574,725 - -0.6 574,786 + -0.7 574,786 + +0.8 574,786 + -1.6 574,787 - -1.3 574,787 - -0.3 574,787 - +1.3 574,787 - -0.5 574,790 + +0.3 574,790 + +1.4 574,790 + -1.0 574,790 + +0.4 574,790 + -0.3 574,790 + +0.3 574,791 - -1.2 574,791 - -1.0 574,791 - +0.8 574,791 - +1.4 574,791 - -0.2 574,791 - -0.0 574,791 - +1.4 574,883 + QEN71_RS02560 0.17 +1.0 574,884 - QEN71_RS02560 0.17 +0.9 574,884 - QEN71_RS02560 0.17 -0.0 574,884 - QEN71_RS02560 0.17 -1.6 575,051 + QEN71_RS02560 0.37 -0.6 575,051 + QEN71_RS02560 0.37 -0.7 575,051 + QEN71_RS02560 0.37 -0.6 575,051 + QEN71_RS02560 0.37 -0.2 575,051 + QEN71_RS02560 0.37 +1.1 575,052 - QEN71_RS02560 0.37 +0.9 575,052 - QEN71_RS02560 0.37 -0.5 575,052 - QEN71_RS02560 0.37 +0.8 575,052 - QEN71_RS02560 0.37 +0.8 575,052 - QEN71_RS02560 0.37 +0.1 575,096 + QEN71_RS02560 0.42 -0.5 575,096 + QEN71_RS02560 0.42 -0.2 575,097 - QEN71_RS02560 0.42 -0.4 575,097 - QEN71_RS02560 0.42 +0.8 575,097 - QEN71_RS02560 0.42 -2.0 575,097 - QEN71_RS02560 0.42 +0.0 575,097 - QEN71_RS02560 0.42 -0.7 575,097 - QEN71_RS02560 0.42 -1.7 575,097 - QEN71_RS02560 0.42 -1.4 575,097 - QEN71_RS02560 0.42 +0.1 575,102 + QEN71_RS02560 0.43 +0.8 575,102 + QEN71_RS02560 0.43 +0.5 575,102 + QEN71_RS02560 0.43 -0.6 575,102 + QEN71_RS02560 0.43 +1.0 575,102 + QEN71_RS02560 0.43 -0.6 575,102 + QEN71_RS02560 0.43 -0.7 575,102 + QEN71_RS02560 0.43 +0.5 575,102 + QEN71_RS02560 0.43 +0.8 575,103 - QEN71_RS02560 0.43 +0.7 575,103 - QEN71_RS02560 0.43 -1.3 575,103 - QEN71_RS02560 0.43 +0.2 575,103 - QEN71_RS02560 0.43 +0.7 575,103 - QEN71_RS02560 0.43 +0.4 575,103 - QEN71_RS02560 0.43 -0.2 575,103 - QEN71_RS02560 0.43 -0.6 575,103 - QEN71_RS02560 0.43 -1.2 575,103 - QEN71_RS02560 0.43 +0.3 575,339 + QEN71_RS02560 0.71 -0.5 575,339 + QEN71_RS02560 0.71 +0.2 575,339 + QEN71_RS02560 0.71 -0.7 575,339 + QEN71_RS02560 0.71 +0.8 575,339 + QEN71_RS02560 0.71 +0.4 575,339 + QEN71_RS02560 0.71 -1.2 575,339 + QEN71_RS02560 0.71 +0.4 575,340 - QEN71_RS02560 0.71 -1.3 575,340 - QEN71_RS02560 0.71 -0.3 575,340 - QEN71_RS02560 0.71 +0.1 575,340 - QEN71_RS02560 0.71 +0.5 575,340 - QEN71_RS02560 0.71 +0.2 575,340 - QEN71_RS02560 0.71 -0.5 575,507 + +0.5 575,507 + -0.1 575,519 + +0.1 575,519 + +0.4 575,520 - +0.8 575,605 + +0.1 575,605 + -0.7 575,628 - +0.7 575,628 - -0.0 575,649 + -0.9 575,655 + +0.9 575,655 + -0.9 575,655 + +0.0 575,655 + -1.3 575,655 + +1.1 575,656 - -0.7 575,656 - -0.5 575,656 - +0.3 575,656 - -0.6 575,656 - +0.6 575,696 + -2.4
Or see this region's nucleotide sequence