Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02415 and QEN71_RS02420 overlap by 4 nucleotides QEN71_RS02420 and QEN71_RS02425 are separated by 215 nucleotides
QEN71_RS02415: QEN71_RS02415 - AzlC family ABC transporter permease, at 539,842 to 540,597
_RS02415
QEN71_RS02420: QEN71_RS02420 - AzlD domain-containing protein, at 540,594 to 540,917
_RS02420
QEN71_RS02425: QEN71_RS02425 - phosphoglycerate kinase, at 541,133 to 542,326
_RS02425
Position (kb) 540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.613 kb on + strand at 539.671 kb on - strand at 539.671 kb on - strand at 539.671 kb on - strand at 539.675 kb on + strand at 539.675 kb on + strand at 539.722 kb on + strand at 539.722 kb on + strand at 539.722 kb on + strand at 539.722 kb on + strand at 539.723 kb on - strand at 539.724 kb on + strand at 539.724 kb on + strand at 539.725 kb on - strand at 539.725 kb on - strand at 539.725 kb on - strand at 539.899 kb on + strand at 539.900 kb on - strand at 540.007 kb on + strand, within QEN71_RS02415 at 540.142 kb on + strand, within QEN71_RS02415 at 540.142 kb on + strand, within QEN71_RS02415 at 540.142 kb on + strand, within QEN71_RS02415 at 540.143 kb on - strand, within QEN71_RS02415 at 540.143 kb on - strand, within QEN71_RS02415 at 540.143 kb on - strand, within QEN71_RS02415 at 540.143 kb on - strand, within QEN71_RS02415 at 540.143 kb on - strand, within QEN71_RS02415 at 540.175 kb on + strand, within QEN71_RS02415 at 540.175 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.196 kb on + strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.197 kb on - strand, within QEN71_RS02415 at 540.232 kb on + strand, within QEN71_RS02415 at 540.232 kb on + strand, within QEN71_RS02415 at 540.233 kb on - strand, within QEN71_RS02415 at 540.233 kb on - strand, within QEN71_RS02415 at 540.233 kb on - strand, within QEN71_RS02415 at 540.233 kb on - strand, within QEN71_RS02415 at 540.233 kb on - strand, within QEN71_RS02415 at 540.233 kb on - strand, within QEN71_RS02415 at 540.253 kb on + strand, within QEN71_RS02415 at 540.253 kb on + strand, within QEN71_RS02415 at 540.253 kb on + strand, within QEN71_RS02415 at 540.253 kb on + strand, within QEN71_RS02415 at 540.253 kb on + strand, within QEN71_RS02415 at 540.253 kb on + strand, within QEN71_RS02415 at 540.253 kb on + strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.254 kb on - strand, within QEN71_RS02415 at 540.721 kb on - strand, within QEN71_RS02420 at 540.814 kb on - strand, within QEN71_RS02420 at 540.854 kb on + strand, within QEN71_RS02420 at 540.855 kb on - strand, within QEN71_RS02420 at 540.855 kb on - strand, within QEN71_RS02420 at 540.855 kb on - strand, within QEN71_RS02420 at 540.855 kb on - strand, within QEN71_RS02420 at 540.986 kb on + strand at 540.986 kb on + strand at 540.986 kb on + strand at 540.986 kb on + strand at 540.987 kb on - strand at 540.987 kb on - strand at 540.987 kb on - strand at 540.987 kb on - strand at 540.987 kb on - strand at 541.010 kb on + strand at 541.010 kb on + strand at 541.010 kb on + strand at 541.010 kb on + strand at 541.010 kb on + strand at 541.011 kb on - strand at 541.011 kb on - strand at 541.011 kb on - strand at 541.011 kb on - strand at 541.011 kb on - strand at 541.036 kb on + strand at 541.036 kb on + strand at 541.036 kb on + strand at 541.036 kb on + strand at 541.036 kb on + strand at 541.036 kb on + strand at 541.125 kb on + strand at 541.125 kb on + strand at 541.125 kb on + strand at 541.143 kb on + strand at 541.143 kb on + strand at 541.143 kb on + strand at 541.143 kb on + strand at 541.143 kb on + strand at 541.143 kb on + strand at 541.143 kb on + strand at 541.144 kb on - strand at 541.179 kb on + strand at 541.559 kb on + strand, within QEN71_RS02425 at 541.559 kb on + strand, within QEN71_RS02425 at 541.810 kb on + strand, within QEN71_RS02425 at 541.810 kb on + strand, within QEN71_RS02425
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 539,613 + -1.5 539,671 - +0.5 539,671 - -0.3 539,671 - -0.1 539,675 + -0.5 539,675 + -1.8 539,722 + +1.3 539,722 + +0.3 539,722 + -1.2 539,722 + +1.3 539,723 - -0.4 539,724 + -0.5 539,724 + +0.6 539,725 - -0.7 539,725 - -0.4 539,725 - -0.6 539,899 + -0.4 539,900 - -1.6 540,007 + QEN71_RS02415 0.22 -0.0 540,142 + QEN71_RS02415 0.40 -0.8 540,142 + QEN71_RS02415 0.40 +0.1 540,142 + QEN71_RS02415 0.40 +2.0 540,143 - QEN71_RS02415 0.40 -0.0 540,143 - QEN71_RS02415 0.40 +0.4 540,143 - QEN71_RS02415 0.40 +0.1 540,143 - QEN71_RS02415 0.40 +0.2 540,143 - QEN71_RS02415 0.40 -1.0 540,175 + QEN71_RS02415 0.44 -1.4 540,175 + QEN71_RS02415 0.44 -1.9 540,196 + QEN71_RS02415 0.47 -2.0 540,196 + QEN71_RS02415 0.47 +0.5 540,196 + QEN71_RS02415 0.47 -0.6 540,196 + QEN71_RS02415 0.47 -1.5 540,196 + QEN71_RS02415 0.47 -0.8 540,196 + QEN71_RS02415 0.47 -0.0 540,196 + QEN71_RS02415 0.47 +0.9 540,196 + QEN71_RS02415 0.47 -0.5 540,196 + QEN71_RS02415 0.47 +0.7 540,196 + QEN71_RS02415 0.47 +0.6 540,196 + QEN71_RS02415 0.47 +0.9 540,196 + QEN71_RS02415 0.47 -0.4 540,196 + QEN71_RS02415 0.47 +0.3 540,197 - QEN71_RS02415 0.47 -0.2 540,197 - QEN71_RS02415 0.47 -0.5 540,197 - QEN71_RS02415 0.47 -0.6 540,197 - QEN71_RS02415 0.47 -0.2 540,197 - QEN71_RS02415 0.47 -2.0 540,197 - QEN71_RS02415 0.47 -1.1 540,197 - QEN71_RS02415 0.47 -0.0 540,197 - QEN71_RS02415 0.47 +0.5 540,197 - QEN71_RS02415 0.47 +0.4 540,197 - QEN71_RS02415 0.47 +1.3 540,197 - QEN71_RS02415 0.47 +0.8 540,197 - QEN71_RS02415 0.47 -1.2 540,197 - QEN71_RS02415 0.47 +0.8 540,232 + QEN71_RS02415 0.52 +0.7 540,232 + QEN71_RS02415 0.52 -0.8 540,233 - QEN71_RS02415 0.52 -0.2 540,233 - QEN71_RS02415 0.52 +1.8 540,233 - QEN71_RS02415 0.52 -0.5 540,233 - QEN71_RS02415 0.52 -1.7 540,233 - QEN71_RS02415 0.52 -1.2 540,233 - QEN71_RS02415 0.52 +0.1 540,253 + QEN71_RS02415 0.54 +0.8 540,253 + QEN71_RS02415 0.54 -1.3 540,253 + QEN71_RS02415 0.54 +0.6 540,253 + QEN71_RS02415 0.54 +0.3 540,253 + QEN71_RS02415 0.54 +0.9 540,253 + QEN71_RS02415 0.54 -0.8 540,253 + QEN71_RS02415 0.54 -0.8 540,254 - QEN71_RS02415 0.54 +0.5 540,254 - QEN71_RS02415 0.54 -0.9 540,254 - QEN71_RS02415 0.54 +0.2 540,254 - QEN71_RS02415 0.54 +0.4 540,254 - QEN71_RS02415 0.54 -1.0 540,254 - QEN71_RS02415 0.54 +1.4 540,254 - QEN71_RS02415 0.54 -0.5 540,254 - QEN71_RS02415 0.54 -1.5 540,254 - QEN71_RS02415 0.54 +1.4 540,254 - QEN71_RS02415 0.54 +0.8 540,254 - QEN71_RS02415 0.54 -0.3 540,254 - QEN71_RS02415 0.54 -0.3 540,254 - QEN71_RS02415 0.54 -0.6 540,721 - QEN71_RS02420 0.39 +0.1 540,814 - QEN71_RS02420 0.68 +1.8 540,854 + QEN71_RS02420 0.80 +0.5 540,855 - QEN71_RS02420 0.81 -0.5 540,855 - QEN71_RS02420 0.81 -1.2 540,855 - QEN71_RS02420 0.81 -0.3 540,855 - QEN71_RS02420 0.81 +0.4 540,986 + +0.8 540,986 + -0.9 540,986 + -0.7 540,986 + +0.3 540,987 - -0.5 540,987 - -1.3 540,987 - +0.2 540,987 - +0.2 540,987 - -1.3 541,010 + +0.0 541,010 + +0.6 541,010 + -1.8 541,010 + +0.7 541,010 + -0.3 541,011 - +0.7 541,011 - -0.2 541,011 - -1.6 541,011 - +0.4 541,011 - -0.6 541,036 + -0.6 541,036 + +0.0 541,036 + +0.6 541,036 + -1.5 541,036 + +0.1 541,036 + +1.4 541,125 + +2.5 541,125 + -1.6 541,125 + +0.8 541,143 + +0.2 541,143 + -0.4 541,143 + -1.0 541,143 + +2.6 541,143 + -0.0 541,143 + -0.0 541,143 + +0.4 541,144 - -1.2 541,179 + -3.2 541,559 + QEN71_RS02425 0.36 -1.2 541,559 + QEN71_RS02425 0.36 -3.6 541,810 + QEN71_RS02425 0.57 -2.7 541,810 + QEN71_RS02425 0.57 -0.3
Or see this region's nucleotide sequence