Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00920 and QEN71_RS00925 are separated by 173 nucleotides QEN71_RS00925 and QEN71_RS00930 are separated by 60 nucleotides
QEN71_RS00920: QEN71_RS00920 - methyl-accepting chemotaxis protein, at 205,759 to 207,309
_RS00920
QEN71_RS00925: QEN71_RS00925 - solute carrier family 23 protein, at 207,483 to 208,790
_RS00925
QEN71_RS00930: QEN71_RS00930 - Na+/H+ antiporter, at 208,851 to 210,515
_RS00930
Position (kb) 207
208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 206.883 kb on + strand, within QEN71_RS00920 at 207.310 kb on + strand at 207.310 kb on + strand at 207.310 kb on + strand at 207.310 kb on + strand at 207.310 kb on + strand at 207.310 kb on + strand at 207.310 kb on + strand at 207.311 kb on - strand at 207.311 kb on - strand at 207.311 kb on - strand at 207.311 kb on - strand at 207.318 kb on + strand at 207.319 kb on - strand at 207.377 kb on + strand at 207.377 kb on + strand at 207.378 kb on - strand at 207.378 kb on - strand at 207.378 kb on - strand at 207.389 kb on + strand at 207.389 kb on + strand at 207.424 kb on - strand at 207.424 kb on - strand at 207.424 kb on - strand at 207.426 kb on + strand at 207.426 kb on + strand at 207.426 kb on + strand at 207.426 kb on + strand at 207.427 kb on - strand at 207.427 kb on - strand at 207.427 kb on - strand at 207.427 kb on - strand at 207.427 kb on - strand at 207.427 kb on - strand at 207.427 kb on - strand at 207.427 kb on - strand at 207.448 kb on + strand at 207.448 kb on + strand at 207.448 kb on + strand at 207.448 kb on + strand at 207.448 kb on + strand at 207.448 kb on + strand at 207.449 kb on - strand at 207.449 kb on - strand at 207.449 kb on - strand at 207.449 kb on - strand at 207.449 kb on - strand at 207.449 kb on - strand at 207.458 kb on - strand at 207.458 kb on - strand at 207.458 kb on - strand at 207.458 kb on - strand at 207.465 kb on + strand at 207.466 kb on - strand at 207.496 kb on - strand at 207.549 kb on - strand at 207.729 kb on + strand, within QEN71_RS00925 at 207.729 kb on + strand, within QEN71_RS00925 at 207.730 kb on - strand, within QEN71_RS00925 at 207.780 kb on + strand, within QEN71_RS00925 at 207.781 kb on - strand, within QEN71_RS00925 at 207.781 kb on - strand, within QEN71_RS00925 at 207.781 kb on - strand, within QEN71_RS00925 at 207.849 kb on + strand, within QEN71_RS00925 at 207.849 kb on + strand, within QEN71_RS00925 at 207.849 kb on + strand, within QEN71_RS00925 at 207.850 kb on - strand, within QEN71_RS00925 at 207.850 kb on - strand, within QEN71_RS00925 at 207.850 kb on - strand, within QEN71_RS00925 at 207.850 kb on - strand, within QEN71_RS00925 at 207.850 kb on - strand, within QEN71_RS00925 at 208.002 kb on + strand, within QEN71_RS00925 at 208.002 kb on + strand, within QEN71_RS00925 at 208.002 kb on + strand, within QEN71_RS00925 at 208.003 kb on - strand, within QEN71_RS00925 at 208.003 kb on - strand, within QEN71_RS00925 at 208.003 kb on - strand, within QEN71_RS00925 at 208.003 kb on - strand, within QEN71_RS00925 at 208.003 kb on - strand, within QEN71_RS00925 at 208.003 kb on - strand, within QEN71_RS00925 at 208.003 kb on - strand, within QEN71_RS00925 at 208.101 kb on + strand, within QEN71_RS00925 at 208.102 kb on - strand, within QEN71_RS00925 at 208.102 kb on - strand, within QEN71_RS00925 at 208.102 kb on - strand, within QEN71_RS00925 at 208.111 kb on - strand, within QEN71_RS00925 at 208.111 kb on - strand, within QEN71_RS00925 at 208.323 kb on + strand, within QEN71_RS00925 at 208.323 kb on + strand, within QEN71_RS00925 at 208.323 kb on + strand, within QEN71_RS00925 at 208.324 kb on - strand, within QEN71_RS00925 at 208.324 kb on - strand, within QEN71_RS00925 at 208.324 kb on - strand, within QEN71_RS00925 at 208.324 kb on - strand, within QEN71_RS00925 at 208.401 kb on + strand, within QEN71_RS00925 at 208.401 kb on + strand, within QEN71_RS00925 at 208.402 kb on - strand, within QEN71_RS00925 at 208.402 kb on - strand, within QEN71_RS00925 at 208.402 kb on - strand, within QEN71_RS00925 at 208.402 kb on - strand, within QEN71_RS00925 at 208.413 kb on - strand, within QEN71_RS00925 at 208.440 kb on + strand, within QEN71_RS00925 at 208.440 kb on + strand, within QEN71_RS00925 at 208.441 kb on - strand, within QEN71_RS00925 at 208.747 kb on - strand at 208.747 kb on - strand at 208.846 kb on + strand at 208.847 kb on - strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.852 kb on + strand at 208.853 kb on - strand at 208.853 kb on - strand at 208.853 kb on - strand at 208.853 kb on - strand at 208.853 kb on - strand at 208.853 kb on - strand at 209.080 kb on + strand, within QEN71_RS00930 at 209.080 kb on + strand, within QEN71_RS00930 at 209.080 kb on + strand, within QEN71_RS00930 at 209.081 kb on - strand, within QEN71_RS00930 at 209.081 kb on - strand, within QEN71_RS00930 at 209.081 kb on - strand, within QEN71_RS00930 at 209.081 kb on - strand, within QEN71_RS00930 at 209.081 kb on - strand, within QEN71_RS00930 at 209.081 kb on - strand, within QEN71_RS00930 at 209.081 kb on - strand, within QEN71_RS00930 at 209.434 kb on - strand, within QEN71_RS00930 at 209.434 kb on - strand, within QEN71_RS00930 at 209.533 kb on + strand, within QEN71_RS00930 at 209.533 kb on + strand, within QEN71_RS00930 at 209.533 kb on + strand, within QEN71_RS00930 at 209.533 kb on + strand, within QEN71_RS00930 at 209.533 kb on + strand, within QEN71_RS00930 at 209.533 kb on + strand, within QEN71_RS00930 at 209.560 kb on + strand, within QEN71_RS00930 at 209.560 kb on + strand, within QEN71_RS00930 at 209.561 kb on - strand, within QEN71_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 206,883 + QEN71_RS00920 0.72 -0.1 207,310 + +0.9 207,310 + -1.4 207,310 + -0.8 207,310 + -0.3 207,310 + -0.6 207,310 + +0.3 207,310 + -2.1 207,311 - +0.1 207,311 - -1.6 207,311 - -0.0 207,311 - +0.2 207,318 + -1.3 207,319 - -0.3 207,377 + +0.6 207,377 + -0.0 207,378 - +0.8 207,378 - -0.5 207,378 - -0.6 207,389 + -0.1 207,389 + -0.8 207,424 - -1.4 207,424 - -0.3 207,424 - -0.1 207,426 + +0.2 207,426 + -0.3 207,426 + -0.1 207,426 + +0.3 207,427 - +1.1 207,427 - -0.5 207,427 - -0.9 207,427 - -1.1 207,427 - -0.0 207,427 - -1.2 207,427 - -0.0 207,427 - +1.3 207,448 + +0.0 207,448 + +0.5 207,448 + +0.3 207,448 + -0.8 207,448 + -0.8 207,448 + +0.8 207,449 - -0.3 207,449 - -0.4 207,449 - -0.2 207,449 - +1.1 207,449 - +0.0 207,449 - -0.4 207,458 - +0.8 207,458 - +0.2 207,458 - -0.5 207,458 - -0.6 207,465 + +0.4 207,466 - -3.3 207,496 - +0.4 207,549 - -0.8 207,729 + QEN71_RS00925 0.19 +0.1 207,729 + QEN71_RS00925 0.19 +0.4 207,730 - QEN71_RS00925 0.19 -0.4 207,780 + QEN71_RS00925 0.23 -2.1 207,781 - QEN71_RS00925 0.23 -0.7 207,781 - QEN71_RS00925 0.23 +0.8 207,781 - QEN71_RS00925 0.23 +1.5 207,849 + QEN71_RS00925 0.28 -0.5 207,849 + QEN71_RS00925 0.28 -1.3 207,849 + QEN71_RS00925 0.28 -0.6 207,850 - QEN71_RS00925 0.28 -1.1 207,850 - QEN71_RS00925 0.28 -0.6 207,850 - QEN71_RS00925 0.28 -0.2 207,850 - QEN71_RS00925 0.28 -0.8 207,850 - QEN71_RS00925 0.28 +1.4 208,002 + QEN71_RS00925 0.40 +0.7 208,002 + QEN71_RS00925 0.40 -1.1 208,002 + QEN71_RS00925 0.40 -0.3 208,003 - QEN71_RS00925 0.40 -0.4 208,003 - QEN71_RS00925 0.40 -1.8 208,003 - QEN71_RS00925 0.40 +0.2 208,003 - QEN71_RS00925 0.40 -2.7 208,003 - QEN71_RS00925 0.40 +0.7 208,003 - QEN71_RS00925 0.40 -0.6 208,003 - QEN71_RS00925 0.40 +0.3 208,101 + QEN71_RS00925 0.47 -0.7 208,102 - QEN71_RS00925 0.47 -1.6 208,102 - QEN71_RS00925 0.47 -1.4 208,102 - QEN71_RS00925 0.47 -1.3 208,111 - QEN71_RS00925 0.48 +0.8 208,111 - QEN71_RS00925 0.48 +1.0 208,323 + QEN71_RS00925 0.64 -0.7 208,323 + QEN71_RS00925 0.64 -0.3 208,323 + QEN71_RS00925 0.64 -1.4 208,324 - QEN71_RS00925 0.64 +0.9 208,324 - QEN71_RS00925 0.64 -0.8 208,324 - QEN71_RS00925 0.64 -0.1 208,324 - QEN71_RS00925 0.64 +0.0 208,401 + QEN71_RS00925 0.70 -1.2 208,401 + QEN71_RS00925 0.70 -0.4 208,402 - QEN71_RS00925 0.70 -0.5 208,402 - QEN71_RS00925 0.70 -0.3 208,402 - QEN71_RS00925 0.70 -0.1 208,402 - QEN71_RS00925 0.70 +0.2 208,413 - QEN71_RS00925 0.71 -4.0 208,440 + QEN71_RS00925 0.73 -0.1 208,440 + QEN71_RS00925 0.73 +0.4 208,441 - QEN71_RS00925 0.73 -0.2 208,747 - -1.8 208,747 - -1.3 208,846 + +0.3 208,847 - -0.3 208,852 + +0.6 208,852 + -0.7 208,852 + +0.2 208,852 + -1.9 208,852 + +0.5 208,852 + -0.6 208,852 + -0.3 208,852 + +2.5 208,852 + -1.0 208,852 + -1.4 208,853 - -0.4 208,853 - -1.8 208,853 - -0.2 208,853 - -1.3 208,853 - -1.3 208,853 - -0.9 209,080 + QEN71_RS00930 0.14 +0.7 209,080 + QEN71_RS00930 0.14 -0.1 209,080 + QEN71_RS00930 0.14 -0.7 209,081 - QEN71_RS00930 0.14 -0.1 209,081 - QEN71_RS00930 0.14 +0.5 209,081 - QEN71_RS00930 0.14 +2.3 209,081 - QEN71_RS00930 0.14 +0.7 209,081 - QEN71_RS00930 0.14 -0.1 209,081 - QEN71_RS00930 0.14 -0.8 209,081 - QEN71_RS00930 0.14 +0.4 209,434 - QEN71_RS00930 0.35 -0.2 209,434 - QEN71_RS00930 0.35 -0.4 209,533 + QEN71_RS00930 0.41 -0.0 209,533 + QEN71_RS00930 0.41 +0.2 209,533 + QEN71_RS00930 0.41 -0.3 209,533 + QEN71_RS00930 0.41 -1.3 209,533 + QEN71_RS00930 0.41 +0.5 209,533 + QEN71_RS00930 0.41 +1.0 209,560 + QEN71_RS00930 0.43 -0.8 209,560 + QEN71_RS00930 0.43 -0.1 209,561 - QEN71_RS00930 0.43 -0.8
Or see this region's nucleotide sequence