Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44210 and QEN71_RS44215 overlap by 7 nucleotides QEN71_RS44215 and QEN71_RS44220 are separated by 831 nucleotides QEN71_RS44220 and QEN71_RS44225 are separated by 571 nucleotides
QEN71_RS44210: QEN71_RS44210 - transposase, at 318,836 to 318,979
_RS44210
QEN71_RS44215: QEN71_RS44215 - IS5/IS1182 family transposase, at 318,973 to 319,113
_RS44215
QEN71_RS44220: QEN71_RS44220 - RolB family protein, at 319,945 to 320,592
_RS44220
QEN71_RS44225: QEN71_RS44225 - hypothetical protein, at 321,164 to 321,526
_RS44225
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.134 kb on - strand at 319.134 kb on - strand at 319.147 kb on + strand at 319.157 kb on + strand at 319.195 kb on + strand at 319.195 kb on + strand at 319.232 kb on + strand at 319.296 kb on + strand at 319.297 kb on - strand at 319.304 kb on - strand at 319.424 kb on - strand at 319.428 kb on + strand at 319.429 kb on - strand at 319.429 kb on - strand at 319.429 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.494 kb on + strand at 319.495 kb on - strand at 319.495 kb on - strand at 319.500 kb on - strand at 319.500 kb on - strand at 319.561 kb on - strand at 319.714 kb on + strand at 319.718 kb on - strand at 319.756 kb on - strand at 319.820 kb on - strand at 319.820 kb on - strand at 319.879 kb on + strand at 319.925 kb on + strand at 319.926 kb on - strand at 319.926 kb on - strand at 319.946 kb on + strand at 319.946 kb on + strand at 319.946 kb on + strand at 319.948 kb on + strand at 319.948 kb on + strand at 319.949 kb on - strand at 319.949 kb on - strand at 319.949 kb on - strand at 319.991 kb on + strand at 320.062 kb on - strand, within QEN71_RS44220 at 320.081 kb on - strand, within QEN71_RS44220 at 320.102 kb on + strand, within QEN71_RS44220 at 320.102 kb on + strand, within QEN71_RS44220 at 320.110 kb on + strand, within QEN71_RS44220 at 320.111 kb on - strand, within QEN71_RS44220 at 320.120 kb on + strand, within QEN71_RS44220 at 320.120 kb on + strand, within QEN71_RS44220 at 320.120 kb on + strand, within QEN71_RS44220 at 320.120 kb on + strand, within QEN71_RS44220 at 320.120 kb on + strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.121 kb on - strand, within QEN71_RS44220 at 320.157 kb on - strand, within QEN71_RS44220 at 320.157 kb on - strand, within QEN71_RS44220 at 320.189 kb on - strand, within QEN71_RS44220 at 320.189 kb on - strand, within QEN71_RS44220 at 320.209 kb on + strand, within QEN71_RS44220 at 320.209 kb on + strand, within QEN71_RS44220 at 320.210 kb on - strand, within QEN71_RS44220 at 320.210 kb on - strand, within QEN71_RS44220 at 320.213 kb on + strand, within QEN71_RS44220 at 320.213 kb on + strand, within QEN71_RS44220 at 320.214 kb on - strand, within QEN71_RS44220 at 320.214 kb on - strand, within QEN71_RS44220 at 320.264 kb on - strand, within QEN71_RS44220 at 320.286 kb on - strand, within QEN71_RS44220 at 320.288 kb on + strand, within QEN71_RS44220 at 320.288 kb on + strand, within QEN71_RS44220 at 320.348 kb on + strand, within QEN71_RS44220 at 320.367 kb on + strand, within QEN71_RS44220 at 320.368 kb on - strand, within QEN71_RS44220 at 320.368 kb on - strand, within QEN71_RS44220 at 320.435 kb on + strand, within QEN71_RS44220 at 320.436 kb on - strand, within QEN71_RS44220 at 320.436 kb on - strand, within QEN71_RS44220 at 320.480 kb on + strand, within QEN71_RS44220 at 320.480 kb on + strand, within QEN71_RS44220 at 320.481 kb on - strand, within QEN71_RS44220 at 320.539 kb on - strand at 320.603 kb on + strand at 320.603 kb on + strand at 320.603 kb on + strand at 320.603 kb on + strand at 320.603 kb on + strand at 320.603 kb on + strand at 320.604 kb on - strand at 320.604 kb on - strand at 320.604 kb on - strand at 320.604 kb on - strand at 320.611 kb on + strand at 320.611 kb on + strand at 320.612 kb on - strand at 320.612 kb on - strand at 320.667 kb on - strand at 320.674 kb on + strand at 320.674 kb on + strand at 320.678 kb on + strand at 320.678 kb on + strand at 320.678 kb on + strand at 320.678 kb on + strand at 320.679 kb on - strand at 320.680 kb on + strand at 320.681 kb on - strand at 320.682 kb on + strand at 320.682 kb on + strand at 320.682 kb on + strand at 320.683 kb on - strand at 320.683 kb on - strand at 320.683 kb on - strand at 320.683 kb on - strand at 320.683 kb on - strand at 320.683 kb on - strand at 320.684 kb on + strand at 320.684 kb on + strand at 320.684 kb on + strand at 320.684 kb on + strand at 320.685 kb on - strand at 320.891 kb on + strand at 320.927 kb on + strand at 320.928 kb on - strand at 320.983 kb on - strand at 321.054 kb on + strand at 321.055 kb on - strand at 321.055 kb on - strand at 321.055 kb on - strand at 321.057 kb on - strand at 321.146 kb on + strand at 321.146 kb on + strand at 321.147 kb on - strand at 321.147 kb on - strand at 321.326 kb on + strand, within QEN71_RS44225 at 321.326 kb on + strand, within QEN71_RS44225 at 321.331 kb on - strand, within QEN71_RS44225 at 321.384 kb on - strand, within QEN71_RS44225
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 319,134 - -1.3 319,134 - -0.3 319,147 + -0.3 319,157 + -0.5 319,195 + -0.5 319,195 + -1.1 319,232 + +1.4 319,296 + +2.3 319,297 - -0.3 319,304 - -0.6 319,424 - -0.2 319,428 + +1.0 319,429 - +0.8 319,429 - +1.5 319,429 - +0.2 319,442 - -0.3 319,442 - -1.1 319,442 - +0.2 319,494 + -0.1 319,495 - -0.5 319,495 - +0.0 319,500 - -1.9 319,500 - -0.2 319,561 - -1.7 319,714 + +0.2 319,718 - -0.2 319,756 - -0.9 319,820 - -0.7 319,820 - -0.0 319,879 + -1.5 319,925 + +0.6 319,926 - -0.3 319,926 - -0.5 319,946 + -0.4 319,946 + -0.7 319,946 + -1.3 319,948 + +0.1 319,948 + -1.1 319,949 - -0.9 319,949 - +0.9 319,949 - -0.2 319,991 + -0.4 320,062 - QEN71_RS44220 0.18 +0.0 320,081 - QEN71_RS44220 0.21 -1.2 320,102 + QEN71_RS44220 0.24 -0.3 320,102 + QEN71_RS44220 0.24 -0.7 320,110 + QEN71_RS44220 0.25 -0.5 320,111 - QEN71_RS44220 0.26 -0.1 320,120 + QEN71_RS44220 0.27 -0.8 320,120 + QEN71_RS44220 0.27 -0.1 320,120 + QEN71_RS44220 0.27 +0.3 320,120 + QEN71_RS44220 0.27 -0.8 320,120 + QEN71_RS44220 0.27 -0.8 320,121 - QEN71_RS44220 0.27 +1.3 320,121 - QEN71_RS44220 0.27 -1.8 320,121 - QEN71_RS44220 0.27 -0.3 320,121 - QEN71_RS44220 0.27 -1.1 320,121 - QEN71_RS44220 0.27 -2.6 320,121 - QEN71_RS44220 0.27 -1.0 320,121 - QEN71_RS44220 0.27 -0.0 320,121 - QEN71_RS44220 0.27 -0.2 320,121 - QEN71_RS44220 0.27 -0.9 320,157 - QEN71_RS44220 0.33 -0.5 320,157 - QEN71_RS44220 0.33 +0.3 320,189 - QEN71_RS44220 0.38 +0.2 320,189 - QEN71_RS44220 0.38 -1.8 320,209 + QEN71_RS44220 0.41 -1.2 320,209 + QEN71_RS44220 0.41 +0.1 320,210 - QEN71_RS44220 0.41 -1.9 320,210 - QEN71_RS44220 0.41 -0.7 320,213 + QEN71_RS44220 0.41 -0.8 320,213 + QEN71_RS44220 0.41 +2.2 320,214 - QEN71_RS44220 0.42 -1.8 320,214 - QEN71_RS44220 0.42 +0.1 320,264 - QEN71_RS44220 0.49 -0.1 320,286 - QEN71_RS44220 0.53 +0.2 320,288 + QEN71_RS44220 0.53 +1.1 320,288 + QEN71_RS44220 0.53 -0.0 320,348 + QEN71_RS44220 0.62 -1.9 320,367 + QEN71_RS44220 0.65 +0.0 320,368 - QEN71_RS44220 0.65 -0.9 320,368 - QEN71_RS44220 0.65 +0.1 320,435 + QEN71_RS44220 0.76 -1.3 320,436 - QEN71_RS44220 0.76 -0.8 320,436 - QEN71_RS44220 0.76 -1.1 320,480 + QEN71_RS44220 0.83 -2.5 320,480 + QEN71_RS44220 0.83 -1.9 320,481 - QEN71_RS44220 0.83 +1.4 320,539 - +0.1 320,603 + -0.9 320,603 + -1.1 320,603 + -0.1 320,603 + -1.1 320,603 + -1.0 320,603 + -0.7 320,604 - +0.5 320,604 - -0.1 320,604 - +1.4 320,604 - +0.3 320,611 + -0.4 320,611 + +0.9 320,612 - -0.9 320,612 - -1.4 320,667 - +0.3 320,674 + -0.7 320,674 + +0.1 320,678 + -0.5 320,678 + -0.9 320,678 + +0.9 320,678 + -1.0 320,679 - -1.1 320,680 + -2.0 320,681 - +0.7 320,682 + +0.1 320,682 + -0.7 320,682 + -1.7 320,683 - -1.3 320,683 - -0.2 320,683 - -1.3 320,683 - +1.7 320,683 - -0.1 320,683 - -0.5 320,684 + +0.3 320,684 + -0.9 320,684 + -1.2 320,684 + +0.2 320,685 - +0.2 320,891 + -0.6 320,927 + -0.1 320,928 - -0.6 320,983 - -1.1 321,054 + -1.6 321,055 - +0.3 321,055 - -2.6 321,055 - +0.1 321,057 - -0.5 321,146 + -1.2 321,146 + +0.1 321,147 - -0.2 321,147 - -0.8 321,326 + QEN71_RS44225 0.45 -0.3 321,326 + QEN71_RS44225 0.45 -0.1 321,331 - QEN71_RS44225 0.46 -0.9 321,384 - QEN71_RS44225 0.61 +0.2
Or see this region's nucleotide sequence