Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44070 and QEN71_RS44075 are separated by 4 nucleotides QEN71_RS44075 and QEN71_RS44080 overlap by 14 nucleotides QEN71_RS44080 and QEN71_RS44085 are separated by 8 nucleotides
QEN71_RS44070: QEN71_RS44070 - ATPase, T2SS/T4P/T4SS family, at 287,433 to 289,844
_RS44070
QEN71_RS44075: QEN71_RS44075 - hypothetical protein, at 289,849 to 290,433
_RS44075
QEN71_RS44080: QEN71_RS44080 - hypothetical protein, at 290,420 to 291,697
_RS44080
QEN71_RS44085: QEN71_RS44085 - type II secretory pathway protein, at 291,706 to 293,337
_RS44085
Position (kb) 290
291
292 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 289.469 kb on - strand, within QEN71_RS44070 at 289.551 kb on + strand, within QEN71_RS44070 at 289.600 kb on - strand, within QEN71_RS44070 at 289.771 kb on - strand at 289.826 kb on + strand at 289.884 kb on + strand at 289.940 kb on - strand, within QEN71_RS44075 at 289.940 kb on - strand, within QEN71_RS44075 at 289.970 kb on - strand, within QEN71_RS44075 at 290.075 kb on + strand, within QEN71_RS44075 at 290.090 kb on + strand, within QEN71_RS44075 at 290.118 kb on + strand, within QEN71_RS44075 at 290.118 kb on + strand, within QEN71_RS44075 at 290.119 kb on - strand, within QEN71_RS44075 at 290.119 kb on - strand, within QEN71_RS44075 at 290.119 kb on - strand, within QEN71_RS44075 at 290.126 kb on + strand, within QEN71_RS44075 at 290.126 kb on + strand, within QEN71_RS44075 at 290.127 kb on - strand, within QEN71_RS44075 at 290.127 kb on - strand, within QEN71_RS44075 at 290.127 kb on - strand, within QEN71_RS44075 at 290.248 kb on + strand, within QEN71_RS44075 at 290.429 kb on + strand at 290.430 kb on - strand at 290.433 kb on + strand at 290.433 kb on + strand at 290.433 kb on + strand at 290.433 kb on + strand at 290.433 kb on + strand at 290.433 kb on + strand at 290.434 kb on - strand at 290.434 kb on - strand at 290.434 kb on - strand at 290.434 kb on - strand at 290.434 kb on - strand at 290.434 kb on - strand at 290.436 kb on + strand at 290.436 kb on + strand at 290.436 kb on + strand at 290.436 kb on + strand at 290.436 kb on + strand at 290.436 kb on + strand at 290.437 kb on - strand at 290.437 kb on - strand at 290.437 kb on - strand at 290.437 kb on - strand at 290.437 kb on - strand at 290.548 kb on + strand, within QEN71_RS44080 at 290.548 kb on + strand, within QEN71_RS44080 at 290.548 kb on + strand, within QEN71_RS44080 at 290.548 kb on + strand, within QEN71_RS44080 at 290.548 kb on + strand, within QEN71_RS44080 at 290.548 kb on + strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.549 kb on - strand, within QEN71_RS44080 at 290.550 kb on + strand, within QEN71_RS44080 at 290.550 kb on + strand, within QEN71_RS44080 at 290.550 kb on + strand, within QEN71_RS44080 at 290.551 kb on - strand, within QEN71_RS44080 at 290.551 kb on - strand, within QEN71_RS44080 at 290.573 kb on + strand, within QEN71_RS44080 at 290.573 kb on + strand, within QEN71_RS44080 at 290.573 kb on + strand, within QEN71_RS44080 at 290.574 kb on - strand, within QEN71_RS44080 at 290.655 kb on + strand, within QEN71_RS44080 at 290.656 kb on - strand, within QEN71_RS44080 at 290.828 kb on + strand, within QEN71_RS44080 at 290.828 kb on + strand, within QEN71_RS44080 at 290.829 kb on - strand, within QEN71_RS44080 at 290.829 kb on - strand, within QEN71_RS44080 at 290.929 kb on + strand, within QEN71_RS44080 at 290.929 kb on + strand, within QEN71_RS44080 at 290.929 kb on + strand, within QEN71_RS44080 at 290.930 kb on - strand, within QEN71_RS44080 at 291.066 kb on + strand, within QEN71_RS44080 at 291.067 kb on - strand, within QEN71_RS44080 at 291.067 kb on - strand, within QEN71_RS44080 at 291.067 kb on - strand, within QEN71_RS44080 at 291.103 kb on + strand, within QEN71_RS44080 at 291.104 kb on - strand, within QEN71_RS44080 at 291.104 kb on - strand, within QEN71_RS44080 at 291.104 kb on - strand, within QEN71_RS44080 at 291.104 kb on - strand, within QEN71_RS44080 at 291.104 kb on - strand, within QEN71_RS44080 at 291.105 kb on + strand, within QEN71_RS44080 at 291.105 kb on + strand, within QEN71_RS44080 at 291.105 kb on + strand, within QEN71_RS44080 at 291.105 kb on + strand, within QEN71_RS44080 at 291.106 kb on - strand, within QEN71_RS44080 at 291.106 kb on - strand, within QEN71_RS44080 at 291.106 kb on - strand, within QEN71_RS44080 at 291.106 kb on - strand, within QEN71_RS44080 at 291.106 kb on - strand, within QEN71_RS44080 at 291.148 kb on + strand, within QEN71_RS44080 at 291.425 kb on + strand, within QEN71_RS44080 at 291.487 kb on - strand, within QEN71_RS44080 at 291.536 kb on + strand, within QEN71_RS44080 at 291.536 kb on + strand, within QEN71_RS44080 at 291.537 kb on - strand, within QEN71_RS44080 at 291.595 kb on - strand at 291.630 kb on + strand at 291.631 kb on - strand at 291.631 kb on - strand at 291.812 kb on + strand at 291.812 kb on + strand at 291.812 kb on + strand at 291.812 kb on + strand at 291.812 kb on + strand at 291.813 kb on - strand at 291.813 kb on - strand at 291.813 kb on - strand at 291.813 kb on - strand at 291.813 kb on - strand at 291.813 kb on - strand at 291.833 kb on + strand at 291.833 kb on + strand at 291.833 kb on + strand at 291.833 kb on + strand at 291.834 kb on - strand at 291.834 kb on - strand at 291.834 kb on - strand at 291.834 kb on - strand at 291.834 kb on - strand at 291.949 kb on - strand, within QEN71_RS44085 at 291.949 kb on - strand, within QEN71_RS44085 at 291.949 kb on - strand, within QEN71_RS44085 at 291.984 kb on - strand, within QEN71_RS44085 at 292.063 kb on - strand, within QEN71_RS44085 at 292.063 kb on - strand, within QEN71_RS44085 at 292.063 kb on - strand, within QEN71_RS44085 at 292.063 kb on - strand, within QEN71_RS44085 at 292.124 kb on + strand, within QEN71_RS44085 at 292.124 kb on + strand, within QEN71_RS44085 at 292.125 kb on - strand, within QEN71_RS44085 at 292.211 kb on + strand, within QEN71_RS44085 at 292.211 kb on + strand, within QEN71_RS44085 at 292.211 kb on + strand, within QEN71_RS44085 at 292.211 kb on + strand, within QEN71_RS44085 at 292.211 kb on + strand, within QEN71_RS44085 at 292.211 kb on + strand, within QEN71_RS44085 at 292.212 kb on - strand, within QEN71_RS44085 at 292.351 kb on - strand, within QEN71_RS44085 at 292.351 kb on - strand, within QEN71_RS44085 at 292.351 kb on - strand, within QEN71_RS44085 at 292.405 kb on + strand, within QEN71_RS44085 at 292.518 kb on + strand, within QEN71_RS44085 at 292.656 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.663 kb on - strand, within QEN71_RS44085 at 292.669 kb on - strand, within QEN71_RS44085 at 292.696 kb on - strand, within QEN71_RS44085
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 289,469 - QEN71_RS44070 0.84 +0.7 289,551 + QEN71_RS44070 0.88 -0.4 289,600 - QEN71_RS44070 0.90 +0.6 289,771 - +1.5 289,826 + -1.1 289,884 + +0.7 289,940 - QEN71_RS44075 0.16 -0.3 289,940 - QEN71_RS44075 0.16 -0.1 289,970 - QEN71_RS44075 0.21 -0.1 290,075 + QEN71_RS44075 0.39 -1.0 290,090 + QEN71_RS44075 0.41 -0.2 290,118 + QEN71_RS44075 0.46 -0.3 290,118 + QEN71_RS44075 0.46 -1.5 290,119 - QEN71_RS44075 0.46 +0.1 290,119 - QEN71_RS44075 0.46 -0.9 290,119 - QEN71_RS44075 0.46 -0.3 290,126 + QEN71_RS44075 0.47 -0.2 290,126 + QEN71_RS44075 0.47 -0.3 290,127 - QEN71_RS44075 0.48 +1.2 290,127 - QEN71_RS44075 0.48 -0.7 290,127 - QEN71_RS44075 0.48 -0.1 290,248 + QEN71_RS44075 0.68 -0.3 290,429 + +0.7 290,430 - +0.5 290,433 + -1.7 290,433 + -0.3 290,433 + +1.3 290,433 + +0.9 290,433 + -0.9 290,433 + -0.5 290,434 - +2.1 290,434 - +0.2 290,434 - -0.1 290,434 - -0.8 290,434 - -0.5 290,434 - -0.5 290,436 + +1.7 290,436 + -0.1 290,436 + +1.5 290,436 + +0.5 290,436 + -0.1 290,436 + -2.2 290,437 - -2.5 290,437 - -0.5 290,437 - -0.1 290,437 - -0.4 290,437 - -3.9 290,548 + QEN71_RS44080 0.10 -0.6 290,548 + QEN71_RS44080 0.10 +0.1 290,548 + QEN71_RS44080 0.10 -0.6 290,548 + QEN71_RS44080 0.10 -0.7 290,548 + QEN71_RS44080 0.10 -0.6 290,548 + QEN71_RS44080 0.10 -1.1 290,549 - QEN71_RS44080 0.10 +0.4 290,549 - QEN71_RS44080 0.10 +1.4 290,549 - QEN71_RS44080 0.10 -0.5 290,549 - QEN71_RS44080 0.10 +1.2 290,549 - QEN71_RS44080 0.10 -0.1 290,549 - QEN71_RS44080 0.10 -0.5 290,549 - QEN71_RS44080 0.10 -0.1 290,549 - QEN71_RS44080 0.10 -0.5 290,549 - QEN71_RS44080 0.10 +0.8 290,549 - QEN71_RS44080 0.10 +2.2 290,550 + QEN71_RS44080 0.10 -0.1 290,550 + QEN71_RS44080 0.10 +0.1 290,550 + QEN71_RS44080 0.10 +0.5 290,551 - QEN71_RS44080 0.10 -1.2 290,551 - QEN71_RS44080 0.10 -0.1 290,573 + QEN71_RS44080 0.12 -0.3 290,573 + QEN71_RS44080 0.12 -1.7 290,573 + QEN71_RS44080 0.12 -0.5 290,574 - QEN71_RS44080 0.12 -2.0 290,655 + QEN71_RS44080 0.18 -0.2 290,656 - QEN71_RS44080 0.18 -1.1 290,828 + QEN71_RS44080 0.32 +1.0 290,828 + QEN71_RS44080 0.32 -0.8 290,829 - QEN71_RS44080 0.32 +0.3 290,829 - QEN71_RS44080 0.32 -0.7 290,929 + QEN71_RS44080 0.40 -0.9 290,929 + QEN71_RS44080 0.40 +0.5 290,929 + QEN71_RS44080 0.40 -0.8 290,930 - QEN71_RS44080 0.40 -0.7 291,066 + QEN71_RS44080 0.51 +0.8 291,067 - QEN71_RS44080 0.51 -0.9 291,067 - QEN71_RS44080 0.51 -0.9 291,067 - QEN71_RS44080 0.51 +0.5 291,103 + QEN71_RS44080 0.53 +0.4 291,104 - QEN71_RS44080 0.54 -0.4 291,104 - QEN71_RS44080 0.54 +1.3 291,104 - QEN71_RS44080 0.54 -1.8 291,104 - QEN71_RS44080 0.54 +0.0 291,104 - QEN71_RS44080 0.54 +1.2 291,105 + QEN71_RS44080 0.54 -0.3 291,105 + QEN71_RS44080 0.54 +0.0 291,105 + QEN71_RS44080 0.54 +0.9 291,105 + QEN71_RS44080 0.54 -1.8 291,106 - QEN71_RS44080 0.54 -0.9 291,106 - QEN71_RS44080 0.54 -0.1 291,106 - QEN71_RS44080 0.54 +0.2 291,106 - QEN71_RS44080 0.54 -1.3 291,106 - QEN71_RS44080 0.54 -0.5 291,148 + QEN71_RS44080 0.57 +0.1 291,425 + QEN71_RS44080 0.79 -0.3 291,487 - QEN71_RS44080 0.83 -0.7 291,536 + QEN71_RS44080 0.87 -1.2 291,536 + QEN71_RS44080 0.87 -0.5 291,537 - QEN71_RS44080 0.87 -2.0 291,595 - +0.1 291,630 + +0.1 291,631 - -0.3 291,631 - +2.0 291,812 + -1.7 291,812 + -0.6 291,812 + -0.7 291,812 + +0.7 291,812 + -0.1 291,813 - -1.1 291,813 - +1.2 291,813 - -0.8 291,813 - -2.9 291,813 - -2.5 291,813 - -1.7 291,833 + -0.4 291,833 + -1.1 291,833 + -0.7 291,833 + -0.6 291,834 - -1.1 291,834 - +0.3 291,834 - +1.0 291,834 - -1.5 291,834 - -1.3 291,949 - QEN71_RS44085 0.15 -1.7 291,949 - QEN71_RS44085 0.15 -0.3 291,949 - QEN71_RS44085 0.15 -0.4 291,984 - QEN71_RS44085 0.17 +0.8 292,063 - QEN71_RS44085 0.22 +0.1 292,063 - QEN71_RS44085 0.22 -0.3 292,063 - QEN71_RS44085 0.22 -0.0 292,063 - QEN71_RS44085 0.22 -0.3 292,124 + QEN71_RS44085 0.26 -0.8 292,124 + QEN71_RS44085 0.26 -1.2 292,125 - QEN71_RS44085 0.26 +0.7 292,211 + QEN71_RS44085 0.31 -0.7 292,211 + QEN71_RS44085 0.31 -0.3 292,211 + QEN71_RS44085 0.31 -0.5 292,211 + QEN71_RS44085 0.31 -0.3 292,211 + QEN71_RS44085 0.31 +1.8 292,211 + QEN71_RS44085 0.31 -0.3 292,212 - QEN71_RS44085 0.31 -0.3 292,351 - QEN71_RS44085 0.40 +2.0 292,351 - QEN71_RS44085 0.40 -0.3 292,351 - QEN71_RS44085 0.40 -2.7 292,405 + QEN71_RS44085 0.43 -1.0 292,518 + QEN71_RS44085 0.50 -2.4 292,656 + QEN71_RS44085 0.58 -0.6 292,662 + QEN71_RS44085 0.59 +0.5 292,662 + QEN71_RS44085 0.59 -0.8 292,662 + QEN71_RS44085 0.59 -0.4 292,662 + QEN71_RS44085 0.59 -1.0 292,662 + QEN71_RS44085 0.59 -1.5 292,663 - QEN71_RS44085 0.59 +0.7 292,669 - QEN71_RS44085 0.59 -0.9 292,696 - QEN71_RS44085 0.61 +0.3
Or see this region's nucleotide sequence