Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS41275

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS41275 and QEN71_RS41280 are separated by 75 nucleotides QEN71_RS41275: QEN71_RS41275 - D-serine ammonia-lyase, at 328,863 to 330,218 _RS41275 QEN71_RS41280: QEN71_RS41280 - DNA-binding transcriptional regulator DsdC, at 330,294 to 331,235 _RS41280 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 328.127 kb on + strandat 328.155 kb on - strandat 328.218 kb on + strandat 328.219 kb on - strandat 328.219 kb on - strandat 328.246 kb on - strandat 328.249 kb on - strandat 328.301 kb on - strandat 328.320 kb on - strandat 328.402 kb on + strandat 328.403 kb on - strandat 328.410 kb on + strandat 328.411 kb on - strandat 328.413 kb on + strandat 328.477 kb on - strandat 328.512 kb on + strandat 328.512 kb on + strandat 328.513 kb on - strandat 328.535 kb on - strandat 328.559 kb on - strandat 328.668 kb on + strandat 329.011 kb on + strand, within QEN71_RS41275at 329.049 kb on + strand, within QEN71_RS41275at 329.049 kb on + strand, within QEN71_RS41275at 329.050 kb on - strand, within QEN71_RS41275at 329.063 kb on - strand, within QEN71_RS41275at 329.121 kb on - strand, within QEN71_RS41275at 329.186 kb on - strand, within QEN71_RS41275at 329.189 kb on + strand, within QEN71_RS41275at 329.190 kb on - strand, within QEN71_RS41275at 329.193 kb on - strand, within QEN71_RS41275at 329.347 kb on - strand, within QEN71_RS41275at 329.432 kb on + strand, within QEN71_RS41275at 329.432 kb on + strand, within QEN71_RS41275at 329.433 kb on - strand, within QEN71_RS41275at 329.433 kb on - strand, within QEN71_RS41275at 329.433 kb on - strand, within QEN71_RS41275at 329.502 kb on - strand, within QEN71_RS41275at 329.502 kb on - strand, within QEN71_RS41275at 329.692 kb on + strand, within QEN71_RS41275at 329.692 kb on + strand, within QEN71_RS41275at 329.692 kb on + strand, within QEN71_RS41275at 329.761 kb on + strand, within QEN71_RS41275at 329.762 kb on - strand, within QEN71_RS41275at 329.798 kb on + strand, within QEN71_RS41275at 329.798 kb on + strand, within QEN71_RS41275at 329.799 kb on - strand, within QEN71_RS41275at 329.799 kb on - strand, within QEN71_RS41275at 329.814 kb on + strand, within QEN71_RS41275at 329.815 kb on - strand, within QEN71_RS41275at 329.947 kb on - strand, within QEN71_RS41275at 330.092 kb on - strandat 330.131 kb on + strandat 330.180 kb on + strandat 330.181 kb on - strandat 330.181 kb on - strandat 330.185 kb on - strandat 330.205 kb on + strandat 330.256 kb on + strandat 330.259 kb on + strandat 330.259 kb on + strandat 330.297 kb on + strandat 330.297 kb on + strandat 330.297 kb on + strandat 330.297 kb on + strandat 330.383 kb on + strandat 330.384 kb on - strandat 330.441 kb on - strand, within QEN71_RS41280at 330.608 kb on + strand, within QEN71_RS41280at 330.616 kb on - strand, within QEN71_RS41280at 330.792 kb on + strand, within QEN71_RS41280at 330.793 kb on - strand, within QEN71_RS41280at 330.793 kb on - strand, within QEN71_RS41280at 330.814 kb on + strand, within QEN71_RS41280at 330.837 kb on + strand, within QEN71_RS41280at 330.837 kb on + strand, within QEN71_RS41280at 331.019 kb on + strand, within QEN71_RS41280at 331.019 kb on + strand, within QEN71_RS41280at 331.022 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.140 kb on - strand, within QEN71_RS41280at 331.140 kb on - strand, within QEN71_RS41280at 331.143 kb on + strandat 331.143 kb on + strandat 331.146 kb on + strandat 331.147 kb on - strandat 331.205 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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328,127 + +0.2
328,155 - -1.2
328,218 + -1.2
328,219 - -0.1
328,219 - -1.0
328,246 - -1.2
328,249 - -1.5
328,301 - -0.5
328,320 - -1.0
328,402 + -0.5
328,403 - +0.2
328,410 + -0.4
328,411 - -0.9
328,413 + +0.0
328,477 - -0.4
328,512 + +1.0
328,512 + -1.2
328,513 - -0.4
328,535 - -0.2
328,559 - -0.7
328,668 + -0.2
329,011 + QEN71_RS41275 0.11 -0.1
329,049 + QEN71_RS41275 0.14 +2.3
329,049 + QEN71_RS41275 0.14 -1.5
329,050 - QEN71_RS41275 0.14 -1.3
329,063 - QEN71_RS41275 0.15 -0.4
329,121 - QEN71_RS41275 0.19 -0.1
329,186 - QEN71_RS41275 0.24 +0.4
329,189 + QEN71_RS41275 0.24 -0.4
329,190 - QEN71_RS41275 0.24 -0.7
329,193 - QEN71_RS41275 0.24 -0.5
329,347 - QEN71_RS41275 0.36 +0.4
329,432 + QEN71_RS41275 0.42 -1.3
329,432 + QEN71_RS41275 0.42 -2.7
329,433 - QEN71_RS41275 0.42 -2.3
329,433 - QEN71_RS41275 0.42 -1.1
329,433 - QEN71_RS41275 0.42 -0.4
329,502 - QEN71_RS41275 0.47 +0.3
329,502 - QEN71_RS41275 0.47 -0.4
329,692 + QEN71_RS41275 0.61 +1.4
329,692 + QEN71_RS41275 0.61 -0.5
329,692 + QEN71_RS41275 0.61 -1.4
329,761 + QEN71_RS41275 0.66 +0.0
329,762 - QEN71_RS41275 0.66 -0.1
329,798 + QEN71_RS41275 0.69 -1.5
329,798 + QEN71_RS41275 0.69 +1.0
329,799 - QEN71_RS41275 0.69 -1.2
329,799 - QEN71_RS41275 0.69 +0.2
329,814 + QEN71_RS41275 0.70 -1.5
329,815 - QEN71_RS41275 0.70 -0.8
329,947 - QEN71_RS41275 0.80 -0.4
330,092 - -1.4
330,131 + +0.2
330,180 + +1.3
330,181 - +1.0
330,181 - -0.9
330,185 - +0.6
330,205 + -2.5
330,256 + -0.7
330,259 + +1.7
330,259 + -2.0
330,297 + -0.5
330,297 + -1.4
330,297 + -1.8
330,297 + +0.1
330,383 + +0.4
330,384 - -0.9
330,441 - QEN71_RS41280 0.16 -1.2
330,608 + QEN71_RS41280 0.33 +0.2
330,616 - QEN71_RS41280 0.34 +0.2
330,792 + QEN71_RS41280 0.53 +1.1
330,793 - QEN71_RS41280 0.53 -1.9
330,793 - QEN71_RS41280 0.53 -1.1
330,814 + QEN71_RS41280 0.55 -0.5
330,837 + QEN71_RS41280 0.58 -0.7
330,837 + QEN71_RS41280 0.58 -1.1
331,019 + QEN71_RS41280 0.77 -1.0
331,019 + QEN71_RS41280 0.77 -1.7
331,022 + QEN71_RS41280 0.77 -0.7
331,139 + QEN71_RS41280 0.90 -0.2
331,139 + QEN71_RS41280 0.90 -0.7
331,139 + QEN71_RS41280 0.90 -1.4
331,139 + QEN71_RS41280 0.90 -0.9
331,139 + QEN71_RS41280 0.90 +1.9
331,140 - QEN71_RS41280 0.90 +0.9
331,140 - QEN71_RS41280 0.90 +0.3
331,143 + +0.6
331,143 + -0.0
331,146 + -1.1
331,147 - -3.7
331,205 - -0.8

Or see this region's nucleotide sequence