Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36765

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36760 and QEN71_RS36765 are separated by 12 nucleotidesQEN71_RS36765 and QEN71_RS36770 are separated by 52 nucleotides QEN71_RS36760: QEN71_RS36760 - NAD(P)/FAD-dependent oxidoreductase, at 1,626,787 to 1,628,034 _RS36760 QEN71_RS36765: QEN71_RS36765 - type III secretion system outer membrane ring subunit SctC, at 1,628,047 to 1,629,855 _RS36765 QEN71_RS36770: QEN71_RS36770 - helix-turn-helix transcriptional regulator, at 1,629,908 to 1,631,365 _RS36770 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -3 -2 -1 0 1at 1627.174 kb on + strand, within QEN71_RS36760at 1627.175 kb on - strand, within QEN71_RS36760at 1627.175 kb on - strand, within QEN71_RS36760at 1627.377 kb on - strand, within QEN71_RS36760at 1627.531 kb on - strand, within QEN71_RS36760at 1628.014 kb on - strandat 1628.549 kb on + strand, within QEN71_RS36765at 1629.098 kb on + strand, within QEN71_RS36765at 1629.098 kb on + strand, within QEN71_RS36765at 1629.099 kb on - strand, within QEN71_RS36765at 1629.099 kb on - strand, within QEN71_RS36765at 1629.221 kb on + strand, within QEN71_RS36765at 1629.221 kb on + strand, within QEN71_RS36765at 1629.221 kb on + strand, within QEN71_RS36765at 1629.222 kb on - strand, within QEN71_RS36765at 1629.750 kb on + strandat 1629.750 kb on + strandat 1629.750 kb on + strandat 1629.751 kb on - strandat 1629.871 kb on + strandat 1629.871 kb on + strandat 1629.872 kb on - strandat 1630.206 kb on + strand, within QEN71_RS36770at 1630.207 kb on - strand, within QEN71_RS36770at 1630.353 kb on + strand, within QEN71_RS36770at 1630.354 kb on - strand, within QEN71_RS36770at 1630.416 kb on + strand, within QEN71_RS36770at 1630.762 kb on - strand, within QEN71_RS36770

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,627,174 + QEN71_RS36760 0.31 -0.0
1,627,175 - QEN71_RS36760 0.31 -1.9
1,627,175 - QEN71_RS36760 0.31 -0.0
1,627,377 - QEN71_RS36760 0.47 -2.7
1,627,531 - QEN71_RS36760 0.60 -0.9
1,628,014 - +0.3
1,628,549 + QEN71_RS36765 0.28 -0.3
1,629,098 + QEN71_RS36765 0.58 +0.1
1,629,098 + QEN71_RS36765 0.58 -0.4
1,629,099 - QEN71_RS36765 0.58 -0.6
1,629,099 - QEN71_RS36765 0.58 -0.4
1,629,221 + QEN71_RS36765 0.65 -0.5
1,629,221 + QEN71_RS36765 0.65 -2.8
1,629,221 + QEN71_RS36765 0.65 -0.3
1,629,222 - QEN71_RS36765 0.65 -0.0
1,629,750 + +0.3
1,629,750 + +1.6
1,629,750 + -0.8
1,629,751 - +0.6
1,629,871 + -1.6
1,629,871 + -1.3
1,629,872 - -1.1
1,630,206 + QEN71_RS36770 0.20 -0.0
1,630,207 - QEN71_RS36770 0.21 -2.1
1,630,353 + QEN71_RS36770 0.31 -0.4
1,630,354 - QEN71_RS36770 0.31 +0.2
1,630,416 + QEN71_RS36770 0.35 -0.2
1,630,762 - QEN71_RS36770 0.59 -0.4

Or see this region's nucleotide sequence