Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36760 and QEN71_RS36765 are separated by 12 nucleotides QEN71_RS36765 and QEN71_RS36770 are separated by 52 nucleotides
QEN71_RS36760: QEN71_RS36760 - NAD(P)/FAD-dependent oxidoreductase, at 1,626,787 to 1,628,034
_RS36760
QEN71_RS36765: QEN71_RS36765 - type III secretion system outer membrane ring subunit SctC, at 1,628,047 to 1,629,855
_RS36765
QEN71_RS36770: QEN71_RS36770 - helix-turn-helix transcriptional regulator, at 1,629,908 to 1,631,365
_RS36770
Position (kb)
1628
1629
1630 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1627.174 kb on + strand, within QEN71_RS36760 at 1627.175 kb on - strand, within QEN71_RS36760 at 1627.175 kb on - strand, within QEN71_RS36760 at 1627.377 kb on - strand, within QEN71_RS36760 at 1627.531 kb on - strand, within QEN71_RS36760 at 1628.014 kb on - strand at 1628.549 kb on + strand, within QEN71_RS36765 at 1629.098 kb on + strand, within QEN71_RS36765 at 1629.098 kb on + strand, within QEN71_RS36765 at 1629.099 kb on - strand, within QEN71_RS36765 at 1629.099 kb on - strand, within QEN71_RS36765 at 1629.221 kb on + strand, within QEN71_RS36765 at 1629.221 kb on + strand, within QEN71_RS36765 at 1629.221 kb on + strand, within QEN71_RS36765 at 1629.222 kb on - strand, within QEN71_RS36765 at 1629.750 kb on + strand at 1629.750 kb on + strand at 1629.750 kb on + strand at 1629.751 kb on - strand at 1629.871 kb on + strand at 1629.871 kb on + strand at 1629.872 kb on - strand at 1630.206 kb on + strand, within QEN71_RS36770 at 1630.207 kb on - strand, within QEN71_RS36770 at 1630.353 kb on + strand, within QEN71_RS36770 at 1630.354 kb on - strand, within QEN71_RS36770 at 1630.416 kb on + strand, within QEN71_RS36770 at 1630.762 kb on - strand, within QEN71_RS36770
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 1,627,174 + QEN71_RS36760 0.31 -0.0 1,627,175 - QEN71_RS36760 0.31 -1.9 1,627,175 - QEN71_RS36760 0.31 -0.0 1,627,377 - QEN71_RS36760 0.47 -2.7 1,627,531 - QEN71_RS36760 0.60 -0.9 1,628,014 - +0.3 1,628,549 + QEN71_RS36765 0.28 -0.3 1,629,098 + QEN71_RS36765 0.58 +0.1 1,629,098 + QEN71_RS36765 0.58 -0.4 1,629,099 - QEN71_RS36765 0.58 -0.6 1,629,099 - QEN71_RS36765 0.58 -0.4 1,629,221 + QEN71_RS36765 0.65 -0.5 1,629,221 + QEN71_RS36765 0.65 -2.8 1,629,221 + QEN71_RS36765 0.65 -0.3 1,629,222 - QEN71_RS36765 0.65 -0.0 1,629,750 + +0.3 1,629,750 + +1.6 1,629,750 + -0.8 1,629,751 - +0.6 1,629,871 + -1.6 1,629,871 + -1.3 1,629,872 - -1.1 1,630,206 + QEN71_RS36770 0.20 -0.0 1,630,207 - QEN71_RS36770 0.21 -2.1 1,630,353 + QEN71_RS36770 0.31 -0.4 1,630,354 - QEN71_RS36770 0.31 +0.2 1,630,416 + QEN71_RS36770 0.35 -0.2 1,630,762 - QEN71_RS36770 0.59 -0.4
Or see this region's nucleotide sequence