Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS35820 and QEN71_RS35825 are separated by 262 nucleotides QEN71_RS35825 and QEN71_RS35830 are separated by 12 nucleotides QEN71_RS35830 and QEN71_RS35835 are separated by 1 nucleotides
QEN71_RS35820: QEN71_RS35820 - MFS transporter, at 1,419,023 to 1,420,300
_RS35820
QEN71_RS35825: QEN71_RS35825 - shikimate dehydrogenase, at 1,420,563 to 1,421,378
_RS35825
QEN71_RS35830: QEN71_RS35830 - YciI family protein, at 1,421,391 to 1,421,714
_RS35830
QEN71_RS35835: QEN71_RS35835 - CoA transferase, at 1,421,716 to 1,422,921
_RS35835
Position (kb) 1420
1421
1422 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1419.631 kb on - strand, within QEN71_RS35820 at 1419.682 kb on + strand, within QEN71_RS35820 at 1419.703 kb on + strand, within QEN71_RS35820 at 1419.765 kb on - strand, within QEN71_RS35820 at 1420.086 kb on + strand, within QEN71_RS35820 at 1420.087 kb on - strand, within QEN71_RS35820 at 1420.224 kb on + strand at 1420.237 kb on - strand at 1420.300 kb on + strand at 1420.300 kb on + strand at 1420.300 kb on + strand at 1420.301 kb on - strand at 1420.362 kb on - strand at 1420.788 kb on - strand, within QEN71_RS35825 at 1420.788 kb on - strand, within QEN71_RS35825 at 1420.788 kb on - strand, within QEN71_RS35825 at 1420.933 kb on - strand, within QEN71_RS35825 at 1420.933 kb on - strand, within QEN71_RS35825 at 1421.011 kb on - strand, within QEN71_RS35825 at 1421.063 kb on + strand, within QEN71_RS35825 at 1421.110 kb on - strand, within QEN71_RS35825 at 1421.147 kb on + strand, within QEN71_RS35825 at 1421.213 kb on + strand, within QEN71_RS35825 at 1421.247 kb on - strand, within QEN71_RS35825 at 1421.349 kb on - strand at 1421.393 kb on - strand at 1421.601 kb on + strand, within QEN71_RS35830 at 1421.601 kb on + strand, within QEN71_RS35830 at 1421.635 kb on + strand, within QEN71_RS35830 at 1421.703 kb on - strand at 1421.844 kb on - strand, within QEN71_RS35835 at 1421.844 kb on - strand, within QEN71_RS35835 at 1421.866 kb on - strand, within QEN71_RS35835 at 1421.867 kb on + strand, within QEN71_RS35835 at 1422.171 kb on + strand, within QEN71_RS35835
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 1,419,631 - QEN71_RS35820 0.48 +0.4 1,419,682 + QEN71_RS35820 0.52 +1.3 1,419,703 + QEN71_RS35820 0.53 -1.7 1,419,765 - QEN71_RS35820 0.58 -0.4 1,420,086 + QEN71_RS35820 0.83 -2.2 1,420,087 - QEN71_RS35820 0.83 +0.7 1,420,224 + +1.0 1,420,237 - +1.0 1,420,300 + -1.5 1,420,300 + +0.0 1,420,300 + +0.6 1,420,301 - +0.6 1,420,362 - +0.7 1,420,788 - QEN71_RS35825 0.28 +0.0 1,420,788 - QEN71_RS35825 0.28 -0.9 1,420,788 - QEN71_RS35825 0.28 -0.6 1,420,933 - QEN71_RS35825 0.45 -0.6 1,420,933 - QEN71_RS35825 0.45 -0.6 1,421,011 - QEN71_RS35825 0.55 -2.1 1,421,063 + QEN71_RS35825 0.61 -0.9 1,421,110 - QEN71_RS35825 0.67 +2.0 1,421,147 + QEN71_RS35825 0.72 -1.2 1,421,213 + QEN71_RS35825 0.80 -0.2 1,421,247 - QEN71_RS35825 0.84 +0.0 1,421,349 - +1.7 1,421,393 - +0.1 1,421,601 + QEN71_RS35830 0.65 +1.0 1,421,601 + QEN71_RS35830 0.65 -1.6 1,421,635 + QEN71_RS35830 0.75 -0.7 1,421,703 - +0.8 1,421,844 - QEN71_RS35835 0.11 +0.4 1,421,844 - QEN71_RS35835 0.11 +0.2 1,421,866 - QEN71_RS35835 0.12 -0.4 1,421,867 + QEN71_RS35835 0.13 +0.1 1,422,171 + QEN71_RS35835 0.38 -0.5
Or see this region's nucleotide sequence