Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34695

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34690 and QEN71_RS34695 are separated by 109 nucleotidesQEN71_RS34695 and QEN71_RS34700 are separated by 15 nucleotidesQEN71_RS34700 and QEN71_RS34705 are separated by 195 nucleotides QEN71_RS34690: QEN71_RS34690 - hypothetical protein, at 1,099,522 to 1,102,035 _RS34690 QEN71_RS34695: QEN71_RS34695 - hypothetical protein, at 1,102,145 to 1,102,996 _RS34695 QEN71_RS34700: QEN71_RS34700 - PAAR domain-containing protein, at 1,103,012 to 1,103,266 _RS34700 QEN71_RS34705: QEN71_RS34705 - hypothetical protein, at 1,103,462 to 1,103,719 _RS34705 Position (kb) 1102 1103Strain fitness (log2 ratio) -2 -1 0 1 2at 1101.341 kb on + strand, within QEN71_RS34690at 1101.422 kb on - strand, within QEN71_RS34690at 1101.478 kb on - strand, within QEN71_RS34690at 1101.504 kb on + strand, within QEN71_RS34690at 1101.527 kb on + strand, within QEN71_RS34690at 1101.566 kb on + strand, within QEN71_RS34690at 1101.566 kb on + strand, within QEN71_RS34690at 1101.566 kb on + strand, within QEN71_RS34690at 1101.567 kb on - strand, within QEN71_RS34690at 1101.774 kb on + strand, within QEN71_RS34690at 1102.053 kb on - strandat 1102.153 kb on + strandat 1102.172 kb on - strandat 1102.354 kb on + strand, within QEN71_RS34695at 1102.374 kb on - strand, within QEN71_RS34695at 1102.559 kb on + strand, within QEN71_RS34695at 1102.560 kb on - strand, within QEN71_RS34695at 1102.572 kb on - strand, within QEN71_RS34695at 1102.653 kb on - strand, within QEN71_RS34695at 1102.688 kb on + strand, within QEN71_RS34695at 1102.827 kb on - strand, within QEN71_RS34695at 1103.083 kb on + strand, within QEN71_RS34700at 1103.134 kb on - strand, within QEN71_RS34700at 1103.155 kb on + strand, within QEN71_RS34700at 1103.155 kb on + strand, within QEN71_RS34700at 1103.155 kb on + strand, within QEN71_RS34700at 1103.272 kb on + strandat 1103.424 kb on - strandat 1103.532 kb on - strand, within QEN71_RS34705

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,101,341 + QEN71_RS34690 0.72 +0.9
1,101,422 - QEN71_RS34690 0.76 -1.9
1,101,478 - QEN71_RS34690 0.78 +0.0
1,101,504 + QEN71_RS34690 0.79 +1.8
1,101,527 + QEN71_RS34690 0.80 +1.9
1,101,566 + QEN71_RS34690 0.81 +2.5
1,101,566 + QEN71_RS34690 0.81 +2.0
1,101,566 + QEN71_RS34690 0.81 +1.7
1,101,567 - QEN71_RS34690 0.81 -0.8
1,101,774 + QEN71_RS34690 0.90 +0.5
1,102,053 - -0.9
1,102,153 + +1.0
1,102,172 - -1.3
1,102,354 + QEN71_RS34695 0.25 +0.5
1,102,374 - QEN71_RS34695 0.27 -1.1
1,102,559 + QEN71_RS34695 0.49 +1.1
1,102,560 - QEN71_RS34695 0.49 -0.5
1,102,572 - QEN71_RS34695 0.50 -1.2
1,102,653 - QEN71_RS34695 0.60 +0.8
1,102,688 + QEN71_RS34695 0.64 +0.7
1,102,827 - QEN71_RS34695 0.80 +0.4
1,103,083 + QEN71_RS34700 0.28 -0.8
1,103,134 - QEN71_RS34700 0.48 +0.3
1,103,155 + QEN71_RS34700 0.56 +1.2
1,103,155 + QEN71_RS34700 0.56 +1.8
1,103,155 + QEN71_RS34700 0.56 +2.0
1,103,272 + +0.6
1,103,424 - +0.0
1,103,532 - QEN71_RS34705 0.27 -1.3

Or see this region's nucleotide sequence