Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32900 and QEN71_RS32905 are separated by 86 nucleotides QEN71_RS32905 and QEN71_RS32910 are separated by 8 nucleotides QEN71_RS32910 and QEN71_RS32915 are separated by 41 nucleotides
QEN71_RS32900: QEN71_RS32900 - helix-turn-helix domain-containing protein, at 712,025 to 713,245
_RS32900
QEN71_RS32905: QEN71_RS32905 - DUF899 domain-containing protein, at 713,332 to 714,102
_RS32905
QEN71_RS32910: QEN71_RS32910 - DUF2182 domain-containing protein, at 714,111 to 714,920
_RS32910
QEN71_RS32915: QEN71_RS32915 - SDR family oxidoreductase, at 714,962 to 715,732
_RS32915
Position (kb) 713
714
715 Strain fitness (log2 ratio) -2
-1
0
1 at 713.293 kb on + strand at 713.294 kb on - strand at 713.294 kb on - strand at 713.298 kb on + strand at 713.299 kb on - strand at 713.343 kb on + strand at 713.344 kb on - strand at 713.572 kb on + strand, within QEN71_RS32905 at 713.698 kb on + strand, within QEN71_RS32905 at 713.699 kb on - strand, within QEN71_RS32905 at 713.776 kb on + strand, within QEN71_RS32905 at 713.963 kb on - strand, within QEN71_RS32905 at 713.971 kb on + strand, within QEN71_RS32905 at 713.980 kb on + strand, within QEN71_RS32905 at 713.980 kb on + strand, within QEN71_RS32905 at 713.980 kb on + strand, within QEN71_RS32905 at 713.980 kb on + strand, within QEN71_RS32905 at 713.980 kb on + strand, within QEN71_RS32905 at 713.981 kb on - strand, within QEN71_RS32905 at 714.013 kb on + strand, within QEN71_RS32905 at 714.013 kb on + strand, within QEN71_RS32905 at 714.013 kb on + strand, within QEN71_RS32905 at 714.014 kb on - strand, within QEN71_RS32905 at 714.014 kb on - strand, within QEN71_RS32905 at 714.082 kb on + strand at 714.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 713,293 + -1.0 713,294 - -1.9 713,294 - +0.9 713,298 + +0.3 713,299 - -0.8 713,343 + -0.4 713,344 - +0.1 713,572 + QEN71_RS32905 0.31 -0.7 713,698 + QEN71_RS32905 0.47 +0.6 713,699 - QEN71_RS32905 0.48 -0.2 713,776 + QEN71_RS32905 0.58 +0.5 713,963 - QEN71_RS32905 0.82 +0.2 713,971 + QEN71_RS32905 0.83 +1.0 713,980 + QEN71_RS32905 0.84 -0.8 713,980 + QEN71_RS32905 0.84 +1.3 713,980 + QEN71_RS32905 0.84 +0.4 713,980 + QEN71_RS32905 0.84 +1.2 713,980 + QEN71_RS32905 0.84 +1.6 713,981 - QEN71_RS32905 0.84 +0.6 714,013 + QEN71_RS32905 0.88 -0.6 714,013 + QEN71_RS32905 0.88 -0.6 714,013 + QEN71_RS32905 0.88 +0.9 714,014 - QEN71_RS32905 0.88 -0.8 714,014 - QEN71_RS32905 0.88 -0.1 714,082 + +0.2 714,083 - -0.1
Or see this region's nucleotide sequence