Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32795 and QEN71_RS32800 are separated by 323 nucleotides QEN71_RS32800 and QEN71_RS32805 are separated by 35 nucleotides QEN71_RS32805 and QEN71_RS32810 are separated by 139 nucleotides QEN71_RS32810 and QEN71_RS32815 are separated by 134 nucleotides
QEN71_RS32795: QEN71_RS32795 - sigma-54-dependent Fis family transcriptional regulator, at 689,459 to 691,564
_RS32795
QEN71_RS32800: QEN71_RS32800 - dihydroneopterin aldolase, at 691,888 to 692,367
_RS32800
QEN71_RS32805: QEN71_RS32805 - hypothetical protein, at 692,403 to 692,819
_RS32805
QEN71_RS32810: QEN71_RS32810 - formaldehyde-activating enzyme, at 692,959 to 693,468
_RS32810
QEN71_RS32815: QEN71_RS32815 - triphosphoribosyl-dephospho-CoA synthase, at 693,603 to 694,478
_RS32815
Position (kb) 692
693 Strain fitness (log2 ratio) -2
-1
0
1
2 at 691.523 kb on + strand at 691.523 kb on + strand at 691.524 kb on - strand at 691.565 kb on + strand at 691.623 kb on + strand at 691.623 kb on + strand at 691.624 kb on - strand at 691.630 kb on + strand at 691.630 kb on + strand at 691.631 kb on - strand at 691.631 kb on - strand at 691.631 kb on - strand at 691.631 kb on - strand at 691.634 kb on + strand at 691.634 kb on + strand at 691.635 kb on - strand at 691.635 kb on - strand at 691.661 kb on - strand at 691.702 kb on + strand at 691.703 kb on - strand at 691.743 kb on + strand at 691.743 kb on + strand at 691.743 kb on + strand at 691.744 kb on - strand at 691.744 kb on - strand at 691.744 kb on - strand at 691.760 kb on + strand at 691.760 kb on + strand at 691.768 kb on + strand at 691.768 kb on + strand at 691.769 kb on - strand at 691.773 kb on - strand at 691.779 kb on - strand at 691.779 kb on - strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.886 kb on - strand at 691.926 kb on + strand at 691.927 kb on - strand at 692.017 kb on + strand, within QEN71_RS32800 at 692.018 kb on - strand, within QEN71_RS32800 at 692.369 kb on + strand at 692.473 kb on + strand, within QEN71_RS32805 at 692.543 kb on - strand, within QEN71_RS32805 at 692.624 kb on - strand, within QEN71_RS32805 at 692.624 kb on - strand, within QEN71_RS32805 at 692.671 kb on + strand, within QEN71_RS32805 at 692.672 kb on - strand, within QEN71_RS32805 at 692.701 kb on + strand, within QEN71_RS32805 at 692.702 kb on - strand, within QEN71_RS32805 at 692.831 kb on + strand at 692.836 kb on + strand at 692.949 kb on + strand at 692.949 kb on + strand at 692.949 kb on + strand at 692.949 kb on + strand at 692.950 kb on - strand at 692.950 kb on - strand at 692.950 kb on - strand at 692.950 kb on - strand at 692.950 kb on - strand at 693.065 kb on + strand, within QEN71_RS32810 at 693.065 kb on + strand, within QEN71_RS32810 at 693.065 kb on + strand, within QEN71_RS32810 at 693.066 kb on - strand, within QEN71_RS32810 at 693.066 kb on - strand, within QEN71_RS32810 at 693.066 kb on - strand, within QEN71_RS32810 at 693.442 kb on + strand at 693.569 kb on - strand at 693.614 kb on + strand at 693.614 kb on + strand at 693.614 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 691,523 + -0.0 691,523 + -0.8 691,524 - -0.2 691,565 + +0.3 691,623 + -0.8 691,623 + +0.6 691,624 - -0.3 691,630 + -0.8 691,630 + -0.1 691,631 - -0.0 691,631 - -0.9 691,631 - -0.3 691,631 - -1.0 691,634 + +0.0 691,634 + -1.3 691,635 - -0.5 691,635 - +0.1 691,661 - -1.7 691,702 + -1.3 691,703 - +0.2 691,743 + -1.7 691,743 + -0.8 691,743 + +0.4 691,744 - -0.1 691,744 - +0.4 691,744 - +0.0 691,760 + -0.2 691,760 + -0.4 691,768 + -1.0 691,768 + -0.2 691,769 - +0.9 691,773 - -0.2 691,779 - +0.2 691,779 - -1.3 691,885 + -0.2 691,885 + -0.1 691,885 + +0.6 691,885 + -0.7 691,886 - +0.2 691,926 + +0.4 691,927 - -0.3 692,017 + QEN71_RS32800 0.27 +2.0 692,018 - QEN71_RS32800 0.27 +0.9 692,369 + +0.7 692,473 + QEN71_RS32805 0.17 -0.9 692,543 - QEN71_RS32805 0.34 +0.3 692,624 - QEN71_RS32805 0.53 +0.1 692,624 - QEN71_RS32805 0.53 +0.2 692,671 + QEN71_RS32805 0.64 +1.1 692,672 - QEN71_RS32805 0.65 -1.1 692,701 + QEN71_RS32805 0.71 -0.1 692,702 - QEN71_RS32805 0.72 -0.3 692,831 + +0.4 692,836 + -0.3 692,949 + +2.0 692,949 + -0.5 692,949 + -1.2 692,949 + -0.8 692,950 - +0.8 692,950 - +1.1 692,950 - -1.3 692,950 - +0.5 692,950 - -0.6 693,065 + QEN71_RS32810 0.21 +0.2 693,065 + QEN71_RS32810 0.21 -0.4 693,065 + QEN71_RS32810 0.21 +1.3 693,066 - QEN71_RS32810 0.21 -1.0 693,066 - QEN71_RS32810 0.21 -1.8 693,066 - QEN71_RS32810 0.21 +0.0 693,442 + -0.2 693,569 - +0.3 693,614 + -0.8 693,614 + -0.4 693,614 + -0.8
Or see this region's nucleotide sequence