Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31370 and QEN71_RS31375 are separated by 135 nucleotides QEN71_RS31375 and QEN71_RS31380 are separated by 433 nucleotides QEN71_RS31380 and QEN71_RS31385 are separated by 116 nucleotides
QEN71_RS31370: QEN71_RS31370 - aldehyde dehydrogenase (NADP(+)), at 386,574 to 388,175
_RS31370
QEN71_RS31375: QEN71_RS31375 - DUF4148 domain-containing protein, at 388,311 to 388,595
_RS31375
QEN71_RS31380: QEN71_RS31380 - branched-chain amino acid ABC transporter substrate-binding protein, at 389,029 to 390,201
_RS31380
QEN71_RS31385: QEN71_RS31385 - MFS transporter, at 390,318 to 391,682
_RS31385
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.063 kb on - strand at 388.072 kb on + strand at 388.072 kb on + strand at 388.073 kb on - strand at 388.677 kb on + strand at 388.677 kb on + strand at 388.759 kb on + strand at 388.760 kb on - strand at 388.760 kb on - strand at 388.760 kb on - strand at 389.023 kb on + strand at 389.167 kb on + strand, within QEN71_RS31380 at 389.168 kb on - strand, within QEN71_RS31380 at 389.389 kb on + strand, within QEN71_RS31380 at 389.389 kb on + strand, within QEN71_RS31380 at 389.389 kb on + strand, within QEN71_RS31380 at 389.389 kb on + strand, within QEN71_RS31380 at 389.390 kb on - strand, within QEN71_RS31380 at 389.390 kb on - strand, within QEN71_RS31380 at 389.390 kb on - strand, within QEN71_RS31380 at 389.932 kb on + strand, within QEN71_RS31380 at 390.029 kb on + strand, within QEN71_RS31380 at 390.029 kb on + strand, within QEN71_RS31380 at 390.029 kb on + strand, within QEN71_RS31380 at 390.029 kb on + strand, within QEN71_RS31380 at 390.030 kb on - strand, within QEN71_RS31380 at 390.030 kb on - strand, within QEN71_RS31380 at 390.030 kb on - strand, within QEN71_RS31380 at 390.030 kb on - strand, within QEN71_RS31380 at 390.030 kb on - strand, within QEN71_RS31380 at 390.045 kb on - strand, within QEN71_RS31380 at 390.078 kb on + strand, within QEN71_RS31380 at 390.128 kb on - strand at 390.343 kb on - strand at 390.437 kb on - strand at 390.437 kb on - strand at 390.486 kb on + strand, within QEN71_RS31385 at 390.486 kb on + strand, within QEN71_RS31385 at 390.609 kb on - strand, within QEN71_RS31385 at 390.820 kb on - strand, within QEN71_RS31385 at 391.003 kb on - strand, within QEN71_RS31385 at 391.003 kb on - strand, within QEN71_RS31385 at 391.003 kb on - strand, within QEN71_RS31385 at 391.155 kb on + strand, within QEN71_RS31385 at 391.156 kb on - strand, within QEN71_RS31385 at 391.156 kb on - strand, within QEN71_RS31385 at 391.156 kb on - strand, within QEN71_RS31385 at 391.156 kb on - strand, within QEN71_RS31385 at 391.156 kb on - strand, within QEN71_RS31385 at 391.158 kb on - strand, within QEN71_RS31385
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 388,063 - +0.2 388,072 + -0.6 388,072 + -0.5 388,073 - -2.3 388,677 + +0.2 388,677 + -0.7 388,759 + +2.3 388,760 - -0.8 388,760 - +0.8 388,760 - -0.4 389,023 + -0.9 389,167 + QEN71_RS31380 0.12 -0.8 389,168 - QEN71_RS31380 0.12 +1.1 389,389 + QEN71_RS31380 0.31 -1.0 389,389 + QEN71_RS31380 0.31 +1.3 389,389 + QEN71_RS31380 0.31 +0.2 389,389 + QEN71_RS31380 0.31 -0.0 389,390 - QEN71_RS31380 0.31 -1.8 389,390 - QEN71_RS31380 0.31 -2.2 389,390 - QEN71_RS31380 0.31 -0.3 389,932 + QEN71_RS31380 0.77 -0.3 390,029 + QEN71_RS31380 0.85 +0.3 390,029 + QEN71_RS31380 0.85 -0.1 390,029 + QEN71_RS31380 0.85 +0.0 390,029 + QEN71_RS31380 0.85 +0.7 390,030 - QEN71_RS31380 0.85 -0.0 390,030 - QEN71_RS31380 0.85 -0.6 390,030 - QEN71_RS31380 0.85 +0.5 390,030 - QEN71_RS31380 0.85 -2.1 390,030 - QEN71_RS31380 0.85 -1.6 390,045 - QEN71_RS31380 0.87 -1.9 390,078 + QEN71_RS31380 0.89 +0.4 390,128 - +0.4 390,343 - +0.5 390,437 - -0.2 390,437 - -0.0 390,486 + QEN71_RS31385 0.12 -0.0 390,486 + QEN71_RS31385 0.12 -0.6 390,609 - QEN71_RS31385 0.21 -0.0 390,820 - QEN71_RS31385 0.37 +0.4 391,003 - QEN71_RS31385 0.50 +0.4 391,003 - QEN71_RS31385 0.50 -0.6 391,003 - QEN71_RS31385 0.50 +1.0 391,155 + QEN71_RS31385 0.61 -2.0 391,156 - QEN71_RS31385 0.61 +0.1 391,156 - QEN71_RS31385 0.61 -0.9 391,156 - QEN71_RS31385 0.61 +0.6 391,156 - QEN71_RS31385 0.61 +1.1 391,156 - QEN71_RS31385 0.61 -0.4 391,158 - QEN71_RS31385 0.62 -0.4
Or see this region's nucleotide sequence