Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30195 and QEN71_RS30200 are separated by 40 nucleotides QEN71_RS30200 and QEN71_RS30205 are separated by 9 nucleotides QEN71_RS30205 and QEN71_RS30210 are separated by 75 nucleotides
QEN71_RS30195: QEN71_RS30195 - SDR family oxidoreductase, at 124,581 to 125,327
_RS30195
QEN71_RS30200: QEN71_RS30200 - SDR family oxidoreductase, at 125,368 to 126,111
_RS30200
QEN71_RS30205: QEN71_RS30205 - DUF427 domain-containing protein, at 126,121 to 126,519
_RS30205
QEN71_RS30210: QEN71_RS30210 - SDR family oxidoreductase, at 126,595 to 127,341
_RS30210
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.504 kb on - strand at 124.505 kb on - strand at 124.506 kb on + strand at 124.507 kb on - strand at 124.507 kb on - strand at 124.507 kb on - strand at 124.507 kb on - strand at 124.755 kb on - strand, within QEN71_RS30195 at 124.765 kb on - strand, within QEN71_RS30195 at 124.839 kb on - strand, within QEN71_RS30195 at 124.864 kb on + strand, within QEN71_RS30195 at 124.865 kb on - strand, within QEN71_RS30195 at 125.218 kb on + strand, within QEN71_RS30195 at 125.369 kb on + strand at 125.435 kb on + strand at 125.435 kb on + strand at 125.651 kb on + strand, within QEN71_RS30200 at 125.652 kb on - strand, within QEN71_RS30200 at 125.652 kb on - strand, within QEN71_RS30200 at 126.123 kb on - strand at 126.123 kb on - strand at 126.158 kb on + strand at 126.159 kb on - strand at 126.159 kb on - strand at 126.209 kb on + strand, within QEN71_RS30205 at 126.209 kb on + strand, within QEN71_RS30205 at 126.209 kb on + strand, within QEN71_RS30205 at 126.261 kb on - strand, within QEN71_RS30205 at 126.279 kb on - strand, within QEN71_RS30205 at 126.287 kb on + strand, within QEN71_RS30205 at 126.287 kb on + strand, within QEN71_RS30205 at 126.288 kb on - strand, within QEN71_RS30205 at 126.344 kb on + strand, within QEN71_RS30205 at 126.344 kb on + strand, within QEN71_RS30205 at 126.345 kb on - strand, within QEN71_RS30205 at 126.345 kb on - strand, within QEN71_RS30205 at 126.563 kb on + strand at 126.563 kb on + strand at 126.563 kb on + strand at 126.563 kb on + strand at 126.564 kb on - strand at 126.564 kb on - strand at 126.564 kb on - strand at 126.564 kb on - strand at 126.564 kb on - strand at 126.564 kb on - strand at 126.564 kb on - strand at 126.585 kb on + strand at 126.585 kb on + strand at 126.585 kb on + strand at 126.585 kb on + strand at 126.585 kb on + strand at 126.585 kb on + strand at 126.586 kb on - strand at 126.879 kb on - strand, within QEN71_RS30210 at 126.949 kb on + strand, within QEN71_RS30210 at 126.949 kb on + strand, within QEN71_RS30210 at 126.949 kb on + strand, within QEN71_RS30210 at 126.950 kb on - strand, within QEN71_RS30210 at 126.950 kb on - strand, within QEN71_RS30210 at 126.950 kb on - strand, within QEN71_RS30210 at 126.950 kb on - strand, within QEN71_RS30210
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 124,504 - +0.5 124,505 - +0.9 124,506 + +1.7 124,507 - -0.1 124,507 - -0.1 124,507 - -0.5 124,507 - +0.1 124,755 - QEN71_RS30195 0.23 -1.9 124,765 - QEN71_RS30195 0.25 -1.0 124,839 - QEN71_RS30195 0.35 -0.8 124,864 + QEN71_RS30195 0.38 +0.2 124,865 - QEN71_RS30195 0.38 -0.1 125,218 + QEN71_RS30195 0.85 -0.1 125,369 + +0.4 125,435 + -0.2 125,435 + +0.5 125,651 + QEN71_RS30200 0.38 +1.5 125,652 - QEN71_RS30200 0.38 -0.1 125,652 - QEN71_RS30200 0.38 -0.8 126,123 - -0.6 126,123 - +1.9 126,158 + +1.7 126,159 - -0.2 126,159 - +0.7 126,209 + QEN71_RS30205 0.22 +0.1 126,209 + QEN71_RS30205 0.22 +0.2 126,209 + QEN71_RS30205 0.22 +0.9 126,261 - QEN71_RS30205 0.35 -0.3 126,279 - QEN71_RS30205 0.40 -0.2 126,287 + QEN71_RS30205 0.42 +0.1 126,287 + QEN71_RS30205 0.42 +0.6 126,288 - QEN71_RS30205 0.42 +0.3 126,344 + QEN71_RS30205 0.56 +0.6 126,344 + QEN71_RS30205 0.56 +2.4 126,345 - QEN71_RS30205 0.56 -0.8 126,345 - QEN71_RS30205 0.56 +0.5 126,563 + +0.4 126,563 + +0.7 126,563 + +0.9 126,563 + +0.1 126,564 - +0.3 126,564 - -1.1 126,564 - +0.5 126,564 - -2.2 126,564 - -0.1 126,564 - -0.1 126,564 - +0.0 126,585 + +1.0 126,585 + -0.1 126,585 + +0.7 126,585 + +0.9 126,585 + +0.0 126,585 + +0.8 126,586 - +0.3 126,879 - QEN71_RS30210 0.38 -1.8 126,949 + QEN71_RS30210 0.47 +1.6 126,949 + QEN71_RS30210 0.47 -0.1 126,949 + QEN71_RS30210 0.47 -0.9 126,950 - QEN71_RS30210 0.48 -0.2 126,950 - QEN71_RS30210 0.48 +1.5 126,950 - QEN71_RS30210 0.48 +1.2 126,950 - QEN71_RS30210 0.48 +0.5
Or see this region's nucleotide sequence