Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS26470 and QEN71_RS26475 are separated by 11 nucleotides QEN71_RS26475 and QEN71_RS26480 are separated by 42 nucleotides QEN71_RS26480 and QEN71_RS26485 are separated by 336 nucleotides
QEN71_RS26470: QEN71_RS26470 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 5,902,940 to 5,903,494
_RS26470
QEN71_RS26475: QEN71_RS26475 - deoxynucleoside kinase, at 5,903,506 to 5,904,186
_RS26475
QEN71_RS26480: QEN71_RS26480 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 5,904,229 to 5,905,044
_RS26480
QEN71_RS26485: QEN71_RS26485 - aminodeoxychorismate synthase component I, at 5,905,381 to 5,907,246
_RS26485
Position (kb) 5904
5905
5906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5903.560 kb on + strand at 5903.560 kb on + strand at 5903.683 kb on + strand, within QEN71_RS26475 at 5903.683 kb on + strand, within QEN71_RS26475 at 5903.683 kb on + strand, within QEN71_RS26475 at 5903.684 kb on - strand, within QEN71_RS26475 at 5903.684 kb on - strand, within QEN71_RS26475 at 5903.855 kb on - strand, within QEN71_RS26475 at 5903.855 kb on - strand, within QEN71_RS26475 at 5903.855 kb on - strand, within QEN71_RS26475 at 5903.863 kb on + strand, within QEN71_RS26475 at 5903.863 kb on + strand, within QEN71_RS26475 at 5903.863 kb on + strand, within QEN71_RS26475 at 5903.863 kb on + strand, within QEN71_RS26475 at 5903.864 kb on - strand, within QEN71_RS26475 at 5903.890 kb on - strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.920 kb on + strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5903.921 kb on - strand, within QEN71_RS26475 at 5904.001 kb on + strand, within QEN71_RS26475 at 5904.001 kb on + strand, within QEN71_RS26475 at 5904.001 kb on + strand, within QEN71_RS26475 at 5904.001 kb on + strand, within QEN71_RS26475 at 5904.002 kb on - strand, within QEN71_RS26475 at 5904.002 kb on - strand, within QEN71_RS26475 at 5904.002 kb on - strand, within QEN71_RS26475 at 5904.002 kb on - strand, within QEN71_RS26475 at 5904.025 kb on + strand, within QEN71_RS26475 at 5904.025 kb on + strand, within QEN71_RS26475 at 5904.025 kb on + strand, within QEN71_RS26475 at 5904.026 kb on - strand, within QEN71_RS26475 at 5904.026 kb on - strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.040 kb on + strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.041 kb on - strand, within QEN71_RS26475 at 5904.046 kb on + strand, within QEN71_RS26475 at 5904.046 kb on + strand, within QEN71_RS26475 at 5904.046 kb on + strand, within QEN71_RS26475 at 5904.046 kb on + strand, within QEN71_RS26475 at 5904.046 kb on + strand, within QEN71_RS26475 at 5904.047 kb on - strand, within QEN71_RS26475 at 5904.047 kb on - strand, within QEN71_RS26475 at 5904.182 kb on + strand at 5904.182 kb on + strand at 5904.182 kb on + strand at 5904.182 kb on + strand at 5904.182 kb on + strand at 5904.182 kb on + strand at 5904.182 kb on + strand at 5904.182 kb on + strand at 5904.183 kb on - strand at 5904.183 kb on - strand at 5904.183 kb on - strand at 5904.183 kb on - strand at 5904.184 kb on + strand at 5904.184 kb on + strand at 5904.184 kb on + strand at 5904.184 kb on + strand at 5904.185 kb on - strand at 5904.185 kb on - strand at 5904.204 kb on + strand at 5904.205 kb on - strand at 5904.205 kb on - strand at 5904.235 kb on + strand at 5904.235 kb on + strand at 5904.235 kb on + strand at 5904.325 kb on + strand, within QEN71_RS26480 at 5904.325 kb on + strand, within QEN71_RS26480 at 5904.326 kb on - strand, within QEN71_RS26480 at 5904.452 kb on - strand, within QEN71_RS26480 at 5904.521 kb on - strand, within QEN71_RS26480 at 5904.893 kb on + strand, within QEN71_RS26480 at 5904.893 kb on + strand, within QEN71_RS26480 at 5904.894 kb on - strand, within QEN71_RS26480 at 5904.991 kb on + strand at 5904.991 kb on + strand at 5904.991 kb on + strand at 5905.014 kb on + strand at 5905.035 kb on + strand at 5905.035 kb on + strand at 5905.035 kb on + strand at 5905.035 kb on + strand at 5905.035 kb on + strand at 5905.036 kb on - strand at 5905.036 kb on - strand at 5905.036 kb on - strand at 5905.036 kb on - strand at 5905.088 kb on + strand at 5905.089 kb on - strand at 5905.121 kb on + strand at 5905.121 kb on + strand at 5905.121 kb on + strand at 5905.121 kb on + strand at 5905.121 kb on + strand at 5905.121 kb on + strand at 5905.121 kb on + strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.122 kb on - strand at 5905.128 kb on - strand at 5905.128 kb on - strand at 5905.128 kb on - strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.164 kb on + strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.165 kb on - strand at 5905.280 kb on - strand at 5905.280 kb on - strand at 5905.280 kb on - strand at 5905.288 kb on - strand at 5905.288 kb on - strand at 5905.288 kb on - strand at 5905.288 kb on - strand at 5905.305 kb on + strand at 5905.374 kb on + strand at 5905.374 kb on + strand at 5905.389 kb on + strand at 5905.389 kb on + strand at 5905.390 kb on - strand at 5905.390 kb on - strand at 5905.451 kb on - strand at 5905.451 kb on - strand at 5905.451 kb on - strand at 5905.451 kb on - strand at 5905.451 kb on - strand at 5905.635 kb on + strand, within QEN71_RS26485 at 5905.635 kb on + strand, within QEN71_RS26485 at 5905.635 kb on + strand, within QEN71_RS26485 at 5905.635 kb on + strand, within QEN71_RS26485 at 5905.635 kb on + strand, within QEN71_RS26485 at 5905.635 kb on + strand, within QEN71_RS26485 at 5905.636 kb on - strand, within QEN71_RS26485 at 5905.636 kb on - strand, within QEN71_RS26485 at 5905.636 kb on - strand, within QEN71_RS26485 at 5905.636 kb on - strand, within QEN71_RS26485 at 5905.679 kb on + strand, within QEN71_RS26485 at 5905.680 kb on - strand, within QEN71_RS26485 at 5905.680 kb on - strand, within QEN71_RS26485 at 5905.680 kb on - strand, within QEN71_RS26485 at 5905.680 kb on - strand, within QEN71_RS26485 at 5905.680 kb on - strand, within QEN71_RS26485 at 5905.836 kb on + strand, within QEN71_RS26485 at 5905.837 kb on - strand, within QEN71_RS26485 at 5905.837 kb on - strand, within QEN71_RS26485 at 5905.969 kb on + strand, within QEN71_RS26485 at 5905.969 kb on + strand, within QEN71_RS26485 at 5905.969 kb on + strand, within QEN71_RS26485 at 5905.969 kb on + strand, within QEN71_RS26485 at 5905.970 kb on - strand, within QEN71_RS26485 at 5905.970 kb on - strand, within QEN71_RS26485 at 5906.000 kb on + strand, within QEN71_RS26485 at 5906.000 kb on + strand, within QEN71_RS26485 at 5906.000 kb on + strand, within QEN71_RS26485 at 5906.000 kb on + strand, within QEN71_RS26485 at 5906.000 kb on + strand, within QEN71_RS26485 at 5906.000 kb on + strand, within QEN71_RS26485 at 5906.000 kb on + strand, within QEN71_RS26485 at 5906.001 kb on - strand, within QEN71_RS26485 at 5906.001 kb on - strand, within QEN71_RS26485 at 5906.001 kb on - strand, within QEN71_RS26485 at 5906.001 kb on - strand, within QEN71_RS26485 at 5906.001 kb on - strand, within QEN71_RS26485 at 5906.001 kb on - strand, within QEN71_RS26485
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 5,903,560 + -0.2 5,903,560 + -0.5 5,903,683 + QEN71_RS26475 0.26 +0.2 5,903,683 + QEN71_RS26475 0.26 +1.1 5,903,683 + QEN71_RS26475 0.26 -0.7 5,903,684 - QEN71_RS26475 0.26 -1.0 5,903,684 - QEN71_RS26475 0.26 -0.9 5,903,855 - QEN71_RS26475 0.51 -3.2 5,903,855 - QEN71_RS26475 0.51 -0.1 5,903,855 - QEN71_RS26475 0.51 -2.7 5,903,863 + QEN71_RS26475 0.52 +0.2 5,903,863 + QEN71_RS26475 0.52 +0.0 5,903,863 + QEN71_RS26475 0.52 +0.4 5,903,863 + QEN71_RS26475 0.52 +0.9 5,903,864 - QEN71_RS26475 0.53 +0.2 5,903,890 - QEN71_RS26475 0.56 -2.0 5,903,920 + QEN71_RS26475 0.61 +1.4 5,903,920 + QEN71_RS26475 0.61 +1.3 5,903,920 + QEN71_RS26475 0.61 +1.9 5,903,920 + QEN71_RS26475 0.61 -1.0 5,903,920 + QEN71_RS26475 0.61 -0.1 5,903,920 + QEN71_RS26475 0.61 +0.6 5,903,920 + QEN71_RS26475 0.61 +0.6 5,903,920 + QEN71_RS26475 0.61 +0.3 5,903,920 + QEN71_RS26475 0.61 -3.0 5,903,920 + QEN71_RS26475 0.61 +1.7 5,903,920 + QEN71_RS26475 0.61 -0.6 5,903,921 - QEN71_RS26475 0.61 -0.3 5,903,921 - QEN71_RS26475 0.61 -2.4 5,903,921 - QEN71_RS26475 0.61 -0.7 5,903,921 - QEN71_RS26475 0.61 -1.8 5,903,921 - QEN71_RS26475 0.61 -1.7 5,903,921 - QEN71_RS26475 0.61 +0.1 5,903,921 - QEN71_RS26475 0.61 -3.3 5,903,921 - QEN71_RS26475 0.61 -1.2 5,904,001 + QEN71_RS26475 0.73 +0.3 5,904,001 + QEN71_RS26475 0.73 +2.4 5,904,001 + QEN71_RS26475 0.73 +0.6 5,904,001 + QEN71_RS26475 0.73 -0.0 5,904,002 - QEN71_RS26475 0.73 -1.2 5,904,002 - QEN71_RS26475 0.73 -0.9 5,904,002 - QEN71_RS26475 0.73 -1.4 5,904,002 - QEN71_RS26475 0.73 -2.0 5,904,025 + QEN71_RS26475 0.76 +1.2 5,904,025 + QEN71_RS26475 0.76 -0.2 5,904,025 + QEN71_RS26475 0.76 -1.1 5,904,026 - QEN71_RS26475 0.76 -0.9 5,904,026 - QEN71_RS26475 0.76 -1.3 5,904,040 + QEN71_RS26475 0.78 +0.0 5,904,040 + QEN71_RS26475 0.78 -1.8 5,904,040 + QEN71_RS26475 0.78 -0.4 5,904,040 + QEN71_RS26475 0.78 +0.5 5,904,040 + QEN71_RS26475 0.78 +0.8 5,904,040 + QEN71_RS26475 0.78 +1.3 5,904,040 + QEN71_RS26475 0.78 +1.7 5,904,040 + QEN71_RS26475 0.78 -0.3 5,904,040 + QEN71_RS26475 0.78 -0.5 5,904,041 - QEN71_RS26475 0.79 -0.8 5,904,041 - QEN71_RS26475 0.79 -1.8 5,904,041 - QEN71_RS26475 0.79 +0.3 5,904,041 - QEN71_RS26475 0.79 -0.4 5,904,041 - QEN71_RS26475 0.79 -2.4 5,904,041 - QEN71_RS26475 0.79 +0.9 5,904,041 - QEN71_RS26475 0.79 -0.4 5,904,041 - QEN71_RS26475 0.79 -1.4 5,904,046 + QEN71_RS26475 0.79 -0.9 5,904,046 + QEN71_RS26475 0.79 -0.2 5,904,046 + QEN71_RS26475 0.79 +0.6 5,904,046 + QEN71_RS26475 0.79 +1.9 5,904,046 + QEN71_RS26475 0.79 +0.9 5,904,047 - QEN71_RS26475 0.79 -0.9 5,904,047 - QEN71_RS26475 0.79 -1.4 5,904,182 + +0.3 5,904,182 + +0.7 5,904,182 + +0.9 5,904,182 + -0.8 5,904,182 + -0.4 5,904,182 + +2.3 5,904,182 + -1.3 5,904,182 + -0.6 5,904,183 - -1.2 5,904,183 - -1.5 5,904,183 - -2.5 5,904,183 - -1.5 5,904,184 + +0.0 5,904,184 + -0.1 5,904,184 + +0.3 5,904,184 + +0.9 5,904,185 - -1.2 5,904,185 - -1.8 5,904,204 + +0.3 5,904,205 - -2.6 5,904,205 - -2.8 5,904,235 + -2.7 5,904,235 + -1.4 5,904,235 + -3.7 5,904,325 + QEN71_RS26480 0.12 -1.1 5,904,325 + QEN71_RS26480 0.12 -0.7 5,904,326 - QEN71_RS26480 0.12 -1.1 5,904,452 - QEN71_RS26480 0.27 -1.4 5,904,521 - QEN71_RS26480 0.36 -0.4 5,904,893 + QEN71_RS26480 0.81 -2.3 5,904,893 + QEN71_RS26480 0.81 -1.2 5,904,894 - QEN71_RS26480 0.81 -1.2 5,904,991 + -1.8 5,904,991 + -0.4 5,904,991 + -0.7 5,905,014 + -0.1 5,905,035 + -2.6 5,905,035 + -0.6 5,905,035 + -0.3 5,905,035 + -0.7 5,905,035 + -2.0 5,905,036 - -2.1 5,905,036 - -0.1 5,905,036 - -0.1 5,905,036 - -2.0 5,905,088 + -0.2 5,905,089 - +0.2 5,905,121 + -0.5 5,905,121 + -0.2 5,905,121 + -0.2 5,905,121 + -1.3 5,905,121 + -0.6 5,905,121 + -0.7 5,905,121 + -1.2 5,905,122 - -1.2 5,905,122 - -0.4 5,905,122 - -0.7 5,905,122 - -1.0 5,905,122 - -0.4 5,905,122 - -1.9 5,905,122 - +0.5 5,905,122 - +0.5 5,905,122 - -1.9 5,905,128 - +0.3 5,905,128 - +0.4 5,905,128 - -1.1 5,905,164 + -0.2 5,905,164 + -0.6 5,905,164 + +0.6 5,905,164 + -0.2 5,905,164 + +1.1 5,905,164 + -0.0 5,905,164 + +0.1 5,905,164 + +0.3 5,905,164 + +0.4 5,905,164 + +0.4 5,905,165 - -2.0 5,905,165 - +0.1 5,905,165 - +0.8 5,905,165 - +0.8 5,905,165 - +0.4 5,905,165 - -1.0 5,905,165 - +0.2 5,905,165 - -1.4 5,905,165 - +0.2 5,905,165 - +0.2 5,905,165 - +0.3 5,905,165 - -0.6 5,905,165 - +3.4 5,905,165 - +0.3 5,905,165 - +0.2 5,905,165 - -0.7 5,905,165 - -0.5 5,905,280 - -0.1 5,905,280 - -0.3 5,905,280 - +0.3 5,905,288 - -0.4 5,905,288 - +0.7 5,905,288 - -2.1 5,905,288 - +0.1 5,905,305 + -1.9 5,905,374 + -2.1 5,905,374 + +1.8 5,905,389 + -0.1 5,905,389 + +0.5 5,905,390 - -0.3 5,905,390 - -0.0 5,905,451 - -2.8 5,905,451 - +0.0 5,905,451 - +0.2 5,905,451 - -0.8 5,905,451 - -0.2 5,905,635 + QEN71_RS26485 0.14 -0.2 5,905,635 + QEN71_RS26485 0.14 +0.6 5,905,635 + QEN71_RS26485 0.14 -1.7 5,905,635 + QEN71_RS26485 0.14 -1.1 5,905,635 + QEN71_RS26485 0.14 -0.1 5,905,635 + QEN71_RS26485 0.14 +0.7 5,905,636 - QEN71_RS26485 0.14 +1.5 5,905,636 - QEN71_RS26485 0.14 -0.2 5,905,636 - QEN71_RS26485 0.14 -0.1 5,905,636 - QEN71_RS26485 0.14 -0.3 5,905,679 + QEN71_RS26485 0.16 +0.0 5,905,680 - QEN71_RS26485 0.16 -0.4 5,905,680 - QEN71_RS26485 0.16 -1.7 5,905,680 - QEN71_RS26485 0.16 +0.6 5,905,680 - QEN71_RS26485 0.16 -0.8 5,905,680 - QEN71_RS26485 0.16 -1.1 5,905,836 + QEN71_RS26485 0.24 +0.3 5,905,837 - QEN71_RS26485 0.24 +0.2 5,905,837 - QEN71_RS26485 0.24 -0.4 5,905,969 + QEN71_RS26485 0.32 +0.0 5,905,969 + QEN71_RS26485 0.32 +0.6 5,905,969 + QEN71_RS26485 0.32 +0.2 5,905,969 + QEN71_RS26485 0.32 -0.5 5,905,970 - QEN71_RS26485 0.32 +1.3 5,905,970 - QEN71_RS26485 0.32 +0.0 5,906,000 + QEN71_RS26485 0.33 +0.9 5,906,000 + QEN71_RS26485 0.33 -0.8 5,906,000 + QEN71_RS26485 0.33 -1.1 5,906,000 + QEN71_RS26485 0.33 +0.8 5,906,000 + QEN71_RS26485 0.33 -1.2 5,906,000 + QEN71_RS26485 0.33 -1.0 5,906,000 + QEN71_RS26485 0.33 -2.0 5,906,001 - QEN71_RS26485 0.33 +0.4 5,906,001 - QEN71_RS26485 0.33 +0.1 5,906,001 - QEN71_RS26485 0.33 +1.1 5,906,001 - QEN71_RS26485 0.33 +0.8 5,906,001 - QEN71_RS26485 0.33 -0.0 5,906,001 - QEN71_RS26485 0.33 -0.5
Or see this region's nucleotide sequence