Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25215

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25210 and QEN71_RS25215 are separated by 3 nucleotidesQEN71_RS25215 and QEN71_RS25220 are separated by 50 nucleotides QEN71_RS25210: QEN71_RS25210 - LPS export ABC transporter permease LptF, at 5,609,476 to 5,610,588 _RS25210 QEN71_RS25215: QEN71_RS25215 - LPS export ABC transporter permease LptG, at 5,610,592 to 5,611,740 _RS25215 QEN71_RS25220: QEN71_RS25220 - CbiX/SirB N-terminal domain-containing protein, at 5,611,791 to 5,612,168 _RS25220 Position (kb) 5610 5611 5612Strain fitness (log2 ratio) -1 0 1at 5611.739 kb on - strandat 5612.028 kb on - strand, within QEN71_RS25220at 5612.028 kb on - strand, within QEN71_RS25220at 5612.028 kb on - strand, within QEN71_RS25220at 5612.230 kb on - strandat 5612.336 kb on - strandat 5612.382 kb on + strandat 5612.437 kb on + strandat 5612.437 kb on + strandat 5612.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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5,611,739 - -0.5
5,612,028 - QEN71_RS25220 0.63 +0.3
5,612,028 - QEN71_RS25220 0.63 -0.0
5,612,028 - QEN71_RS25220 0.63 -0.1
5,612,230 - +0.1
5,612,336 - -0.7
5,612,382 + -0.5
5,612,437 + -0.5
5,612,437 + -0.6
5,612,437 + -0.0

Or see this region's nucleotide sequence