Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25130

Experiment: Motility_outer_sample_with_outgrowth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS25120 and QEN71_RS25125 overlap by 16 nucleotidesQEN71_RS25125 and QEN71_RS25130 are separated by 86 nucleotidesQEN71_RS25130 and QEN71_RS25135 are separated by 36 nucleotidesQEN71_RS25135 and QEN71_RS25140 overlap by 4 nucleotides QEN71_RS25120: QEN71_RS25120 - alpha-ribazole phosphatase, at 5,592,156 to 5,592,746 _RS25120 QEN71_RS25125: QEN71_RS25125 - adenosylcobinamide-GDP ribazoletransferase, at 5,592,731 to 5,593,480 _RS25125 QEN71_RS25130: QEN71_RS25130 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 5,593,567 to 5,594,619 _RS25130 QEN71_RS25135: QEN71_RS25135 - ABC transporter ATP-binding protein, at 5,594,656 to 5,595,465 _RS25135 QEN71_RS25140: QEN71_RS25140 - iron ABC transporter permease, at 5,595,462 to 5,596,511 _RS25140 Position (kb) 5593 5594 5595Strain fitness (log2 ratio) -2 -1 0 1 2at 5592.691 kb on + strandat 5592.692 kb on - strandat 5592.741 kb on - strandat 5592.762 kb on + strandat 5592.762 kb on + strandat 5592.762 kb on + strandat 5592.762 kb on + strandat 5592.763 kb on - strandat 5592.763 kb on - strandat 5592.763 kb on - strandat 5592.763 kb on - strandat 5592.763 kb on - strandat 5592.763 kb on - strandat 5592.763 kb on - strandat 5592.811 kb on + strand, within QEN71_RS25125at 5592.811 kb on + strand, within QEN71_RS25125at 5592.811 kb on + strand, within QEN71_RS25125at 5592.811 kb on + strand, within QEN71_RS25125at 5592.811 kb on + strand, within QEN71_RS25125at 5592.811 kb on + strand, within QEN71_RS25125at 5592.811 kb on + strand, within QEN71_RS25125at 5592.811 kb on + strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.812 kb on - strand, within QEN71_RS25125at 5592.814 kb on - strand, within QEN71_RS25125at 5592.814 kb on - strand, within QEN71_RS25125at 5592.837 kb on + strand, within QEN71_RS25125at 5592.837 kb on + strand, within QEN71_RS25125at 5592.838 kb on - strand, within QEN71_RS25125at 5592.852 kb on + strand, within QEN71_RS25125at 5592.852 kb on + strand, within QEN71_RS25125at 5592.852 kb on + strand, within QEN71_RS25125at 5592.853 kb on - strand, within QEN71_RS25125at 5592.853 kb on - strand, within QEN71_RS25125at 5592.922 kb on + strand, within QEN71_RS25125at 5592.922 kb on + strand, within QEN71_RS25125at 5592.922 kb on + strand, within QEN71_RS25125at 5592.923 kb on - strand, within QEN71_RS25125at 5593.002 kb on + strand, within QEN71_RS25125at 5593.002 kb on + strand, within QEN71_RS25125at 5593.002 kb on + strand, within QEN71_RS25125at 5593.002 kb on + strand, within QEN71_RS25125at 5593.003 kb on - strand, within QEN71_RS25125at 5593.003 kb on - strand, within QEN71_RS25125at 5593.020 kb on + strand, within QEN71_RS25125at 5593.020 kb on + strand, within QEN71_RS25125at 5593.020 kb on + strand, within QEN71_RS25125at 5593.021 kb on - strand, within QEN71_RS25125at 5593.021 kb on - strand, within QEN71_RS25125at 5593.195 kb on + strand, within QEN71_RS25125at 5593.195 kb on + strand, within QEN71_RS25125at 5593.196 kb on - strand, within QEN71_RS25125at 5593.197 kb on + strand, within QEN71_RS25125at 5593.197 kb on + strand, within QEN71_RS25125at 5593.198 kb on - strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.324 kb on + strand, within QEN71_RS25125at 5593.325 kb on - strand, within QEN71_RS25125at 5593.325 kb on - strand, within QEN71_RS25125at 5593.325 kb on - strand, within QEN71_RS25125at 5593.325 kb on - strand, within QEN71_RS25125at 5593.325 kb on - strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.326 kb on + strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.327 kb on - strand, within QEN71_RS25125at 5593.328 kb on + strand, within QEN71_RS25125at 5593.328 kb on + strand, within QEN71_RS25125at 5593.328 kb on + strand, within QEN71_RS25125at 5593.329 kb on - strand, within QEN71_RS25125at 5593.329 kb on - strand, within QEN71_RS25125at 5593.329 kb on - strand, within QEN71_RS25125at 5593.329 kb on - strand, within QEN71_RS25125at 5593.329 kb on - strand, within QEN71_RS25125at 5593.374 kb on + strand, within QEN71_RS25125at 5593.395 kb on + strand, within QEN71_RS25125at 5593.395 kb on + strand, within QEN71_RS25125at 5593.395 kb on + strand, within QEN71_RS25125at 5593.443 kb on + strandat 5593.444 kb on - strandat 5593.465 kb on - strandat 5593.516 kb on + strandat 5593.516 kb on + strandat 5593.516 kb on + strandat 5593.516 kb on + strandat 5593.516 kb on + strandat 5593.517 kb on - strandat 5593.517 kb on - strandat 5593.517 kb on - strandat 5593.650 kb on + strandat 5593.650 kb on + strandat 5593.650 kb on + strandat 5593.651 kb on - strandat 5593.651 kb on - strandat 5593.651 kb on - strandat 5593.651 kb on - strandat 5593.773 kb on - strand, within QEN71_RS25130at 5593.773 kb on - strand, within QEN71_RS25130at 5593.874 kb on + strand, within QEN71_RS25130at 5593.874 kb on + strand, within QEN71_RS25130at 5593.875 kb on - strand, within QEN71_RS25130at 5593.921 kb on + strand, within QEN71_RS25130at 5593.921 kb on + strand, within QEN71_RS25130at 5593.922 kb on - strand, within QEN71_RS25130at 5593.922 kb on - strand, within QEN71_RS25130at 5594.239 kb on - strand, within QEN71_RS25130at 5594.550 kb on + strandat 5594.550 kb on + strandat 5594.550 kb on + strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.625 kb on + strandat 5594.625 kb on + strandat 5594.625 kb on + strandat 5594.625 kb on + strandat 5594.626 kb on - strandat 5594.626 kb on - strandat 5594.871 kb on + strand, within QEN71_RS25135at 5594.871 kb on + strand, within QEN71_RS25135at 5594.871 kb on + strand, within QEN71_RS25135at 5594.871 kb on + strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5595.083 kb on + strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.267 kb on + strand, within QEN71_RS25135at 5595.267 kb on + strand, within QEN71_RS25135at 5595.267 kb on + strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.365 kb on + strand, within QEN71_RS25135at 5595.365 kb on + strand, within QEN71_RS25135at 5595.365 kb on + strand, within QEN71_RS25135

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
remove
5,592,691 + +1.0
5,592,692 - -0.7
5,592,741 - -0.0
5,592,762 + +0.4
5,592,762 + +0.6
5,592,762 + +0.6
5,592,762 + +0.4
5,592,763 - +0.5
5,592,763 - -0.1
5,592,763 - -0.5
5,592,763 - -1.9
5,592,763 - -0.8
5,592,763 - -1.5
5,592,763 - -0.4
5,592,811 + QEN71_RS25125 0.11 +0.1
5,592,811 + QEN71_RS25125 0.11 +1.0
5,592,811 + QEN71_RS25125 0.11 -0.8
5,592,811 + QEN71_RS25125 0.11 -0.5
5,592,811 + QEN71_RS25125 0.11 +0.6
5,592,811 + QEN71_RS25125 0.11 +0.5
5,592,811 + QEN71_RS25125 0.11 -1.2
5,592,811 + QEN71_RS25125 0.11 -0.6
5,592,812 - QEN71_RS25125 0.11 -0.8
5,592,812 - QEN71_RS25125 0.11 -1.1
5,592,812 - QEN71_RS25125 0.11 -0.1
5,592,812 - QEN71_RS25125 0.11 +0.4
5,592,812 - QEN71_RS25125 0.11 -2.0
5,592,812 - QEN71_RS25125 0.11 +0.8
5,592,812 - QEN71_RS25125 0.11 -0.1
5,592,812 - QEN71_RS25125 0.11 -0.5
5,592,814 - QEN71_RS25125 0.11 +0.1
5,592,814 - QEN71_RS25125 0.11 -0.5
5,592,837 + QEN71_RS25125 0.14 +0.3
5,592,837 + QEN71_RS25125 0.14 -0.0
5,592,838 - QEN71_RS25125 0.14 -0.0
5,592,852 + QEN71_RS25125 0.16 +1.9
5,592,852 + QEN71_RS25125 0.16 -1.0
5,592,852 + QEN71_RS25125 0.16 -1.2
5,592,853 - QEN71_RS25125 0.16 +0.2
5,592,853 - QEN71_RS25125 0.16 -0.1
5,592,922 + QEN71_RS25125 0.25 -2.1
5,592,922 + QEN71_RS25125 0.25 -0.3
5,592,922 + QEN71_RS25125 0.25 +1.3
5,592,923 - QEN71_RS25125 0.26 -0.6
5,593,002 + QEN71_RS25125 0.36 -0.8
5,593,002 + QEN71_RS25125 0.36 -0.0
5,593,002 + QEN71_RS25125 0.36 -0.6
5,593,002 + QEN71_RS25125 0.36 +0.0
5,593,003 - QEN71_RS25125 0.36 +0.9
5,593,003 - QEN71_RS25125 0.36 -0.1
5,593,020 + QEN71_RS25125 0.39 +0.4
5,593,020 + QEN71_RS25125 0.39 +0.1
5,593,020 + QEN71_RS25125 0.39 -1.1
5,593,021 - QEN71_RS25125 0.39 +0.0
5,593,021 - QEN71_RS25125 0.39 +0.9
5,593,195 + QEN71_RS25125 0.62 -0.6
5,593,195 + QEN71_RS25125 0.62 -1.2
5,593,196 - QEN71_RS25125 0.62 -1.6
5,593,197 + QEN71_RS25125 0.62 -0.8
5,593,197 + QEN71_RS25125 0.62 +0.2
5,593,198 - QEN71_RS25125 0.62 -0.4
5,593,324 + QEN71_RS25125 0.79 +0.1
5,593,324 + QEN71_RS25125 0.79 -0.6
5,593,324 + QEN71_RS25125 0.79 -0.8
5,593,324 + QEN71_RS25125 0.79 -0.6
5,593,324 + QEN71_RS25125 0.79 -0.8
5,593,324 + QEN71_RS25125 0.79 +0.3
5,593,324 + QEN71_RS25125 0.79 -0.5
5,593,324 + QEN71_RS25125 0.79 +0.1
5,593,324 + QEN71_RS25125 0.79 -1.3
5,593,324 + QEN71_RS25125 0.79 -0.0
5,593,324 + QEN71_RS25125 0.79 +0.2
5,593,324 + QEN71_RS25125 0.79 +0.2
5,593,324 + QEN71_RS25125 0.79 +0.7
5,593,324 + QEN71_RS25125 0.79 +0.2
5,593,325 - QEN71_RS25125 0.79 -0.1
5,593,325 - QEN71_RS25125 0.79 -0.2
5,593,325 - QEN71_RS25125 0.79 -1.7
5,593,325 - QEN71_RS25125 0.79 +0.5
5,593,325 - QEN71_RS25125 0.79 -0.5
5,593,326 + QEN71_RS25125 0.79 +1.0
5,593,326 + QEN71_RS25125 0.79 +1.7
5,593,326 + QEN71_RS25125 0.79 -0.4
5,593,326 + QEN71_RS25125 0.79 -0.8
5,593,326 + QEN71_RS25125 0.79 -0.1
5,593,326 + QEN71_RS25125 0.79 +0.3
5,593,326 + QEN71_RS25125 0.79 +0.9
5,593,326 + QEN71_RS25125 0.79 +0.1
5,593,326 + QEN71_RS25125 0.79 -1.2
5,593,326 + QEN71_RS25125 0.79 -1.0
5,593,327 - QEN71_RS25125 0.79 +1.2
5,593,327 - QEN71_RS25125 0.79 -1.1
5,593,327 - QEN71_RS25125 0.79 -1.2
5,593,327 - QEN71_RS25125 0.79 +0.5
5,593,327 - QEN71_RS25125 0.79 -0.4
5,593,327 - QEN71_RS25125 0.79 -1.0
5,593,327 - QEN71_RS25125 0.79 -0.7
5,593,327 - QEN71_RS25125 0.79 +0.1
5,593,327 - QEN71_RS25125 0.79 +0.1
5,593,327 - QEN71_RS25125 0.79 -0.4
5,593,327 - QEN71_RS25125 0.79 -1.7
5,593,328 + QEN71_RS25125 0.80 -1.4
5,593,328 + QEN71_RS25125 0.80 -1.5
5,593,328 + QEN71_RS25125 0.80 -0.0
5,593,329 - QEN71_RS25125 0.80 +1.1
5,593,329 - QEN71_RS25125 0.80 -0.1
5,593,329 - QEN71_RS25125 0.80 -0.3
5,593,329 - QEN71_RS25125 0.80 +0.3
5,593,329 - QEN71_RS25125 0.80 -0.0
5,593,374 + QEN71_RS25125 0.86 +0.7
5,593,395 + QEN71_RS25125 0.89 -0.2
5,593,395 + QEN71_RS25125 0.89 -0.0
5,593,395 + QEN71_RS25125 0.89 +0.3
5,593,443 + -1.9
5,593,444 - +0.2
5,593,465 - -1.8
5,593,516 + -0.1
5,593,516 + +0.1
5,593,516 + +0.1
5,593,516 + +0.4
5,593,516 + -0.7
5,593,517 - -1.4
5,593,517 - +0.3
5,593,517 - -0.1
5,593,650 + -0.0
5,593,650 + -1.2
5,593,650 + -0.8
5,593,651 - +0.3
5,593,651 - -1.2
5,593,651 - -0.6
5,593,651 - -0.4
5,593,773 - QEN71_RS25130 0.20 -1.5
5,593,773 - QEN71_RS25130 0.20 -1.5
5,593,874 + QEN71_RS25130 0.29 -0.5
5,593,874 + QEN71_RS25130 0.29 -0.6
5,593,875 - QEN71_RS25130 0.29 +0.6
5,593,921 + QEN71_RS25130 0.34 -0.1
5,593,921 + QEN71_RS25130 0.34 +0.6
5,593,922 - QEN71_RS25130 0.34 -0.2
5,593,922 - QEN71_RS25130 0.34 -0.5
5,594,239 - QEN71_RS25130 0.64 -0.6
5,594,550 + -0.0
5,594,550 + +0.1
5,594,550 + +0.7
5,594,551 - -0.1
5,594,551 - -0.4
5,594,551 - +0.1
5,594,551 - -1.3
5,594,551 - -0.4
5,594,551 - -0.2
5,594,619 + +0.3
5,594,619 + -0.2
5,594,619 + -0.0
5,594,619 + +0.3
5,594,619 + +0.2
5,594,620 - +0.8
5,594,620 - -0.1
5,594,620 - -0.3
5,594,620 - +0.7
5,594,620 - -0.0
5,594,620 - -0.6
5,594,620 - -1.9
5,594,620 - -0.7
5,594,625 + -0.0
5,594,625 + -0.8
5,594,625 + -0.3
5,594,625 + +0.5
5,594,626 - +1.3
5,594,626 - -0.5
5,594,871 + QEN71_RS25135 0.27 -1.6
5,594,871 + QEN71_RS25135 0.27 -0.5
5,594,871 + QEN71_RS25135 0.27 -0.3
5,594,871 + QEN71_RS25135 0.27 +0.7
5,594,872 - QEN71_RS25135 0.27 -1.0
5,594,872 - QEN71_RS25135 0.27 +0.3
5,594,872 - QEN71_RS25135 0.27 +1.2
5,594,872 - QEN71_RS25135 0.27 -0.9
5,594,872 - QEN71_RS25135 0.27 +0.5
5,595,083 + QEN71_RS25135 0.53 +0.1
5,595,084 - QEN71_RS25135 0.53 -0.8
5,595,084 - QEN71_RS25135 0.53 -0.1
5,595,084 - QEN71_RS25135 0.53 -1.1
5,595,084 - QEN71_RS25135 0.53 -0.1
5,595,267 + QEN71_RS25135 0.75 -0.5
5,595,267 + QEN71_RS25135 0.75 -1.5
5,595,267 + QEN71_RS25135 0.75 -0.3
5,595,268 - QEN71_RS25135 0.76 -0.1
5,595,268 - QEN71_RS25135 0.76 -0.2
5,595,268 - QEN71_RS25135 0.76 +0.8
5,595,268 - QEN71_RS25135 0.76 -0.3
5,595,268 - QEN71_RS25135 0.76 -0.0
5,595,268 - QEN71_RS25135 0.76 +0.5
5,595,268 - QEN71_RS25135 0.76 -0.4
5,595,268 - QEN71_RS25135 0.76 +1.4
5,595,365 + QEN71_RS25135 0.88 -0.3
5,595,365 + QEN71_RS25135 0.88 -0.7
5,595,365 + QEN71_RS25135 0.88 -0.3

Or see this region's nucleotide sequence