Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS20445 and QEN71_RS20450 are separated by 148 nucleotides QEN71_RS20450 and QEN71_RS20455 are separated by 220 nucleotides QEN71_RS20455 and QEN71_RS20460 are separated by 3 nucleotides
QEN71_RS20445: QEN71_RS20445 - LysE family translocator, at 4,542,987 to 4,543,610
_RS20445
QEN71_RS20450: QEN71_RS20450 - hypothetical protein, at 4,543,759 to 4,544,316
_RS20450
QEN71_RS20455: QEN71_RS20455 - hypothetical protein, at 4,544,537 to 4,545,325
_RS20455
QEN71_RS20460: QEN71_RS20460 - glycosyltransferase family 4 protein, at 4,545,329 to 4,546,258
_RS20460
Position (kb) 4544
4545
4546 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4543.760 kb on + strand at 4543.761 kb on - strand at 4543.884 kb on + strand, within QEN71_RS20450 at 4543.934 kb on + strand, within QEN71_RS20450 at 4543.935 kb on - strand, within QEN71_RS20450 at 4544.138 kb on + strand, within QEN71_RS20450 at 4544.168 kb on + strand, within QEN71_RS20450 at 4544.456 kb on + strand at 4544.456 kb on + strand at 4544.468 kb on + strand at 4544.469 kb on - strand at 4544.469 kb on - strand at 4544.469 kb on - strand at 4544.591 kb on + strand at 4544.754 kb on - strand, within QEN71_RS20455 at 4544.755 kb on + strand, within QEN71_RS20455 at 4544.755 kb on + strand, within QEN71_RS20455 at 4544.755 kb on + strand, within QEN71_RS20455 at 4544.756 kb on - strand, within QEN71_RS20455 at 4544.847 kb on + strand, within QEN71_RS20455 at 4544.848 kb on - strand, within QEN71_RS20455 at 4544.848 kb on - strand, within QEN71_RS20455 at 4544.893 kb on + strand, within QEN71_RS20455 at 4545.071 kb on + strand, within QEN71_RS20455 at 4545.071 kb on + strand, within QEN71_RS20455 at 4545.158 kb on + strand, within QEN71_RS20455 at 4545.159 kb on - strand, within QEN71_RS20455 at 4545.173 kb on + strand, within QEN71_RS20455 at 4545.223 kb on + strand, within QEN71_RS20455 at 4545.254 kb on + strand at 4545.254 kb on + strand at 4545.254 kb on + strand at 4545.591 kb on - strand, within QEN71_RS20460 at 4545.591 kb on - strand, within QEN71_RS20460 at 4545.591 kb on - strand, within QEN71_RS20460 at 4545.698 kb on + strand, within QEN71_RS20460 at 4545.699 kb on - strand, within QEN71_RS20460 at 4545.807 kb on - strand, within QEN71_RS20460 at 4546.202 kb on + strand at 4546.203 kb on - strand at 4546.203 kb on - strand at 4546.236 kb on + strand at 4546.238 kb on + strand at 4546.238 kb on + strand at 4546.238 kb on + strand at 4546.239 kb on - strand at 4546.239 kb on - strand at 4546.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 4,543,760 + +0.5 4,543,761 - -0.4 4,543,884 + QEN71_RS20450 0.22 +1.0 4,543,934 + QEN71_RS20450 0.31 -0.8 4,543,935 - QEN71_RS20450 0.32 +2.2 4,544,138 + QEN71_RS20450 0.68 +0.8 4,544,168 + QEN71_RS20450 0.73 +0.4 4,544,456 + -0.8 4,544,456 + -0.4 4,544,468 + +0.3 4,544,469 - -1.5 4,544,469 - -0.8 4,544,469 - -1.9 4,544,591 + -0.1 4,544,754 - QEN71_RS20455 0.28 -2.1 4,544,755 + QEN71_RS20455 0.28 +0.3 4,544,755 + QEN71_RS20455 0.28 -1.1 4,544,755 + QEN71_RS20455 0.28 -1.0 4,544,756 - QEN71_RS20455 0.28 +0.4 4,544,847 + QEN71_RS20455 0.39 -0.1 4,544,848 - QEN71_RS20455 0.39 -0.6 4,544,848 - QEN71_RS20455 0.39 -0.0 4,544,893 + QEN71_RS20455 0.45 +0.4 4,545,071 + QEN71_RS20455 0.68 +1.5 4,545,071 + QEN71_RS20455 0.68 -0.9 4,545,158 + QEN71_RS20455 0.79 +1.1 4,545,159 - QEN71_RS20455 0.79 +0.3 4,545,173 + QEN71_RS20455 0.81 -1.1 4,545,223 + QEN71_RS20455 0.87 -0.6 4,545,254 + -0.1 4,545,254 + +0.8 4,545,254 + +0.6 4,545,591 - QEN71_RS20460 0.28 -0.2 4,545,591 - QEN71_RS20460 0.28 +2.5 4,545,591 - QEN71_RS20460 0.28 +0.4 4,545,698 + QEN71_RS20460 0.40 -1.0 4,545,699 - QEN71_RS20460 0.40 +0.2 4,545,807 - QEN71_RS20460 0.51 -0.4 4,546,202 + -0.2 4,546,203 - -1.6 4,546,203 - -0.6 4,546,236 + -1.6 4,546,238 + -0.4 4,546,238 + +0.2 4,546,238 + +0.8 4,546,239 - -2.0 4,546,239 - +0.7 4,546,271 + -0.2
Or see this region's nucleotide sequence