Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS14360 and QEN71_RS14365 overlap by 4 nucleotides QEN71_RS14365 and QEN71_RS14370 overlap by 4 nucleotides QEN71_RS14370 and QEN71_RS14375 overlap by 4 nucleotides QEN71_RS14375 and QEN71_RS14380 overlap by 4 nucleotides
QEN71_RS14360: QEN71_RS14360 - MxaS protein, at 3,204,195 to 3,205,070
_RS14360
QEN71_RS14365: QEN71_RS14365 - hypothetical protein, at 3,205,067 to 3,205,942
_RS14365
QEN71_RS14370: QEN71_RS14370 - vWA domain-containing protein, at 3,205,939 to 3,206,937
_RS14370
QEN71_RS14375: QEN71_RS14375 - MxaK protein, at 3,206,934 to 3,207,494
_RS14375
QEN71_RS14380: QEN71_RS14380 - vWA domain-containing protein, at 3,207,491 to 3,208,453
_RS14380
Position (kb)
3205
3206
3207 Strain fitness (log2 ratio)
-2
-1
0
1 at 3205.116 kb on + strand at 3205.913 kb on + strand at 3205.913 kb on + strand at 3206.035 kb on + strand at 3206.035 kb on + strand at 3206.036 kb on - strand at 3206.624 kb on - strand, within QEN71_RS14370 at 3206.632 kb on + strand, within QEN71_RS14370 at 3206.651 kb on - strand, within QEN71_RS14370 at 3206.651 kb on - strand, within QEN71_RS14370 at 3206.651 kb on - strand, within QEN71_RS14370 at 3206.740 kb on + strand, within QEN71_RS14370 at 3206.741 kb on - strand, within QEN71_RS14370 at 3206.741 kb on - strand, within QEN71_RS14370 at 3206.750 kb on - strand, within QEN71_RS14370 at 3207.004 kb on - strand, within QEN71_RS14375 at 3207.180 kb on + strand, within QEN71_RS14375 at 3207.231 kb on + strand, within QEN71_RS14375 at 3207.232 kb on - strand, within QEN71_RS14375 at 3207.249 kb on + strand, within QEN71_RS14375 at 3207.249 kb on + strand, within QEN71_RS14375 at 3207.250 kb on - strand, within QEN71_RS14375 at 3207.250 kb on - strand, within QEN71_RS14375 at 3207.289 kb on + strand, within QEN71_RS14375 at 3207.289 kb on + strand, within QEN71_RS14375 at 3207.373 kb on - strand, within QEN71_RS14375 at 3207.373 kb on - strand, within QEN71_RS14375 at 3207.628 kb on + strand, within QEN71_RS14380 at 3207.628 kb on + strand, within QEN71_RS14380 at 3207.628 kb on + strand, within QEN71_RS14380 at 3207.629 kb on - strand, within QEN71_RS14380 at 3207.629 kb on - strand, within QEN71_RS14380 at 3207.694 kb on + strand, within QEN71_RS14380 at 3207.820 kb on + strand, within QEN71_RS14380 at 3207.824 kb on + strand, within QEN71_RS14380 at 3207.824 kb on + strand, within QEN71_RS14380 at 3207.909 kb on - strand, within QEN71_RS14380 at 3207.909 kb on - strand, within QEN71_RS14380 at 3207.909 kb on - strand, within QEN71_RS14380
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 3,205,116 + +1.7 3,205,913 + +1.0 3,205,913 + -0.0 3,206,035 + -0.3 3,206,035 + -0.0 3,206,036 - -0.3 3,206,624 - QEN71_RS14370 0.69 +1.3 3,206,632 + QEN71_RS14370 0.69 +1.3 3,206,651 - QEN71_RS14370 0.71 +0.7 3,206,651 - QEN71_RS14370 0.71 +0.7 3,206,651 - QEN71_RS14370 0.71 +1.0 3,206,740 + QEN71_RS14370 0.80 +0.1 3,206,741 - QEN71_RS14370 0.80 -0.2 3,206,741 - QEN71_RS14370 0.80 +0.4 3,206,750 - QEN71_RS14370 0.81 +1.0 3,207,004 - QEN71_RS14375 0.12 -0.4 3,207,180 + QEN71_RS14375 0.44 -0.6 3,207,231 + QEN71_RS14375 0.53 +0.2 3,207,232 - QEN71_RS14375 0.53 -0.7 3,207,249 + QEN71_RS14375 0.56 +1.6 3,207,249 + QEN71_RS14375 0.56 -2.2 3,207,250 - QEN71_RS14375 0.56 +0.5 3,207,250 - QEN71_RS14375 0.56 +1.1 3,207,289 + QEN71_RS14375 0.63 -0.9 3,207,289 + QEN71_RS14375 0.63 +0.0 3,207,373 - QEN71_RS14375 0.78 -2.4 3,207,373 - QEN71_RS14375 0.78 +0.3 3,207,628 + QEN71_RS14380 0.14 +0.3 3,207,628 + QEN71_RS14380 0.14 -0.6 3,207,628 + QEN71_RS14380 0.14 +0.5 3,207,629 - QEN71_RS14380 0.14 -0.3 3,207,629 - QEN71_RS14380 0.14 -0.9 3,207,694 + QEN71_RS14380 0.21 +0.9 3,207,820 + QEN71_RS14380 0.34 +0.4 3,207,824 + QEN71_RS14380 0.35 -0.6 3,207,824 + QEN71_RS14380 0.35 +0.3 3,207,909 - QEN71_RS14380 0.43 -0.5 3,207,909 - QEN71_RS14380 0.43 -0.3 3,207,909 - QEN71_RS14380 0.43 -1.6
Or see this region's nucleotide sequence