Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08505

Experiment: Motility_outer_sample_with_outgrowth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS08500 and QEN71_RS08505 are separated by 869 nucleotidesQEN71_RS08505 and QEN71_RS08510 are separated by 3 nucleotides QEN71_RS08500: QEN71_RS08500 - IS5 family transposase, at 1,897,708 to 1,898,519 _RS08500 QEN71_RS08505: QEN71_RS08505 - undecaprenyl-phosphate glucose phosphotransferase, at 1,899,389 to 1,900,759 _RS08505 QEN71_RS08510: QEN71_RS08510 - helix-turn-helix domain-containing protein, at 1,900,763 to 1,901,764 _RS08510 Position (kb) 1899 1900 1901Strain fitness (log2 ratio) -1 0 1at 1898.399 kb on + strand, within QEN71_RS08500at 1898.400 kb on - strand, within QEN71_RS08500at 1898.400 kb on - strand, within QEN71_RS08500at 1898.672 kb on - strandat 1899.057 kb on + strandat 1899.592 kb on - strand, within QEN71_RS08505at 1899.882 kb on - strand, within QEN71_RS08505at 1900.258 kb on - strand, within QEN71_RS08505at 1900.851 kb on - strandat 1901.032 kb on - strand, within QEN71_RS08510at 1901.096 kb on - strand, within QEN71_RS08510at 1901.534 kb on + strand, within QEN71_RS08510at 1901.669 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
remove
1,898,399 + QEN71_RS08500 0.85 -0.7
1,898,400 - QEN71_RS08500 0.85 +1.2
1,898,400 - QEN71_RS08500 0.85 -1.6
1,898,672 - +0.1
1,899,057 + +0.6
1,899,592 - QEN71_RS08505 0.15 -0.9
1,899,882 - QEN71_RS08505 0.36 -1.2
1,900,258 - QEN71_RS08505 0.63 -0.0
1,900,851 - -0.4
1,901,032 - QEN71_RS08510 0.27 -0.4
1,901,096 - QEN71_RS08510 0.33 +0.4
1,901,534 + QEN71_RS08510 0.77 +0.0
1,901,669 + +0.5

Or see this region's nucleotide sequence