Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06435

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06430 and QEN71_RS06435 are separated by 93 nucleotidesQEN71_RS06435 and QEN71_RS06440 are separated by 71 nucleotidesQEN71_RS06440 and QEN71_RS06445 overlap by 7 nucleotides QEN71_RS06430: QEN71_RS06430 - UMP kinase, at 1,429,341 to 1,430,054 _RS06430 QEN71_RS06435: QEN71_RS06435 - ribosome recycling factor, at 1,430,148 to 1,430,708 _RS06435 QEN71_RS06440: QEN71_RS06440 - polyprenyl diphosphate synthase, at 1,430,780 to 1,431,562 _RS06440 QEN71_RS06445: QEN71_RS06445 - CDP-archaeol synthase, at 1,431,556 to 1,432,377 _RS06445 Position (kb) 1430 1431Strain fitness (log2 ratio) -1 0 1 2at 1429.267 kb on + strandat 1429.278 kb on + strandat 1429.278 kb on + strandat 1429.278 kb on + strandat 1429.284 kb on + strandat 1429.284 kb on + strandat 1430.052 kb on + strandat 1430.052 kb on + strandat 1430.062 kb on + strandat 1430.062 kb on + strandat 1430.062 kb on + strandat 1430.762 kb on + strandat 1430.762 kb on + strandat 1430.762 kb on + strandat 1430.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,429,267 + -1.2
1,429,278 + +0.2
1,429,278 + -0.4
1,429,278 + +0.1
1,429,284 + +0.1
1,429,284 + +0.1
1,430,052 + +0.1
1,430,052 + +0.0
1,430,062 + +2.3
1,430,062 + -0.2
1,430,062 + +1.3
1,430,762 + +0.8
1,430,762 + +1.1
1,430,762 + +0.6
1,430,826 + -0.8

Or see this region's nucleotide sequence