Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04530

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04520 and QEN71_RS04525 overlap by 4 nucleotidesQEN71_RS04525 and QEN71_RS04530 are separated by 226 nucleotidesQEN71_RS04530 and QEN71_RS04535 are separated by 113 nucleotidesQEN71_RS04535 and QEN71_RS04540 are separated by 135 nucleotides QEN71_RS04520: QEN71_RS04520 - SAM-dependent methyltransferase, at 994,565 to 995,284 _RS04520 QEN71_RS04525: QEN71_RS04525 - Maf-like protein, at 995,281 to 995,898 _RS04525 QEN71_RS04530: QEN71_RS04530 - DUF177 domain-containing protein, at 996,125 to 996,763 _RS04530 QEN71_RS04535: QEN71_RS04535 - 50S ribosomal protein L32, at 996,877 to 997,056 _RS04535 QEN71_RS04540: QEN71_RS04540 - phosphate acyltransferase PlsX, at 997,192 to 998,322 _RS04540 Position (kb) 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 995.168 kb on + strand, within QEN71_RS04520at 995.169 kb on - strand, within QEN71_RS04520at 995.169 kb on - strand, within QEN71_RS04520at 995.169 kb on - strand, within QEN71_RS04520at 995.169 kb on - strand, within QEN71_RS04520at 995.169 kb on - strand, within QEN71_RS04520at 995.169 kb on - strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.172 kb on + strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.173 kb on - strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.175 kb on + strand, within QEN71_RS04520at 995.176 kb on - strand, within QEN71_RS04520at 995.176 kb on - strand, within QEN71_RS04520at 995.176 kb on - strand, within QEN71_RS04520at 995.176 kb on - strand, within QEN71_RS04520at 995.254 kb on + strandat 995.255 kb on - strandat 995.268 kb on + strandat 995.268 kb on + strandat 995.268 kb on + strandat 995.268 kb on + strandat 995.269 kb on - strandat 995.269 kb on - strandat 995.435 kb on + strand, within QEN71_RS04525at 995.435 kb on + strand, within QEN71_RS04525at 995.435 kb on + strand, within QEN71_RS04525at 995.436 kb on - strand, within QEN71_RS04525at 995.436 kb on - strand, within QEN71_RS04525at 995.436 kb on - strand, within QEN71_RS04525at 995.436 kb on - strand, within QEN71_RS04525at 995.436 kb on - strand, within QEN71_RS04525at 995.456 kb on + strand, within QEN71_RS04525at 995.456 kb on + strand, within QEN71_RS04525at 995.457 kb on - strand, within QEN71_RS04525at 995.457 kb on - strand, within QEN71_RS04525at 995.457 kb on - strand, within QEN71_RS04525at 995.457 kb on - strand, within QEN71_RS04525at 995.457 kb on - strand, within QEN71_RS04525at 995.457 kb on - strand, within QEN71_RS04525at 995.538 kb on + strand, within QEN71_RS04525at 995.539 kb on - strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.566 kb on + strand, within QEN71_RS04525at 995.567 kb on - strand, within QEN71_RS04525at 995.567 kb on - strand, within QEN71_RS04525at 995.567 kb on - strand, within QEN71_RS04525at 995.567 kb on - strand, within QEN71_RS04525at 995.567 kb on - strand, within QEN71_RS04525at 995.648 kb on + strand, within QEN71_RS04525at 995.648 kb on + strand, within QEN71_RS04525at 995.648 kb on + strand, within QEN71_RS04525at 995.648 kb on + strand, within QEN71_RS04525at 995.649 kb on - strand, within QEN71_RS04525at 995.649 kb on - strand, within QEN71_RS04525at 995.649 kb on - strand, within QEN71_RS04525at 995.649 kb on - strand, within QEN71_RS04525at 995.920 kb on - strandat 995.976 kb on + strandat 995.976 kb on + strandat 995.976 kb on + strandat 995.976 kb on + strandat 995.976 kb on + strandat 995.977 kb on - strandat 996.029 kb on + strandat 996.029 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.079 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.081 kb on + strandat 996.089 kb on + strandat 996.089 kb on + strandat 996.249 kb on + strand, within QEN71_RS04530at 996.249 kb on + strand, within QEN71_RS04530at 996.249 kb on + strand, within QEN71_RS04530at 996.359 kb on + strand, within QEN71_RS04530at 996.359 kb on + strand, within QEN71_RS04530at 996.359 kb on + strand, within QEN71_RS04530at 996.359 kb on + strand, within QEN71_RS04530at 996.359 kb on + strand, within QEN71_RS04530at 996.359 kb on + strand, within QEN71_RS04530at 996.419 kb on + strand, within QEN71_RS04530at 996.419 kb on + strand, within QEN71_RS04530at 996.419 kb on + strand, within QEN71_RS04530at 996.419 kb on + strand, within QEN71_RS04530at 996.419 kb on + strand, within QEN71_RS04530at 996.419 kb on + strand, within QEN71_RS04530at 996.449 kb on + strand, within QEN71_RS04530at 996.808 kb on + strandat 996.821 kb on + strandat 996.821 kb on + strandat 996.821 kb on + strandat 996.821 kb on + strandat 996.821 kb on + strandat 997.054 kb on + strandat 997.098 kb on + strandat 997.098 kb on + strandat 997.199 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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995,168 + QEN71_RS04520 0.84 -1.4
995,169 - QEN71_RS04520 0.84 -0.7
995,169 - QEN71_RS04520 0.84 -0.3
995,169 - QEN71_RS04520 0.84 -2.5
995,169 - QEN71_RS04520 0.84 -3.3
995,169 - QEN71_RS04520 0.84 -3.4
995,169 - QEN71_RS04520 0.84 -1.9
995,172 + QEN71_RS04520 0.84 -1.6
995,172 + QEN71_RS04520 0.84 +0.9
995,172 + QEN71_RS04520 0.84 -0.7
995,172 + QEN71_RS04520 0.84 -0.6
995,172 + QEN71_RS04520 0.84 -1.1
995,172 + QEN71_RS04520 0.84 -0.7
995,172 + QEN71_RS04520 0.84 -0.6
995,172 + QEN71_RS04520 0.84 -1.5
995,172 + QEN71_RS04520 0.84 -2.0
995,172 + QEN71_RS04520 0.84 -0.1
995,172 + QEN71_RS04520 0.84 -0.3
995,172 + QEN71_RS04520 0.84 +0.4
995,172 + QEN71_RS04520 0.84 -1.1
995,172 + QEN71_RS04520 0.84 -2.3
995,172 + QEN71_RS04520 0.84 -1.8
995,172 + QEN71_RS04520 0.84 -1.3
995,172 + QEN71_RS04520 0.84 -1.3
995,172 + QEN71_RS04520 0.84 -0.0
995,172 + QEN71_RS04520 0.84 -1.4
995,172 + QEN71_RS04520 0.84 -1.7
995,172 + QEN71_RS04520 0.84 -1.3
995,172 + QEN71_RS04520 0.84 -0.2
995,172 + QEN71_RS04520 0.84 -1.2
995,172 + QEN71_RS04520 0.84 -1.7
995,172 + QEN71_RS04520 0.84 +0.3
995,172 + QEN71_RS04520 0.84 -1.4
995,172 + QEN71_RS04520 0.84 -0.6
995,172 + QEN71_RS04520 0.84 +0.1
995,172 + QEN71_RS04520 0.84 -1.0
995,172 + QEN71_RS04520 0.84 -0.6
995,172 + QEN71_RS04520 0.84 -1.6
995,172 + QEN71_RS04520 0.84 -0.6
995,172 + QEN71_RS04520 0.84 -1.6
995,172 + QEN71_RS04520 0.84 +0.9
995,173 - QEN71_RS04520 0.84 -1.0
995,173 - QEN71_RS04520 0.84 +1.0
995,173 - QEN71_RS04520 0.84 -2.3
995,173 - QEN71_RS04520 0.84 -1.2
995,173 - QEN71_RS04520 0.84 +0.0
995,173 - QEN71_RS04520 0.84 -1.0
995,173 - QEN71_RS04520 0.84 -1.6
995,173 - QEN71_RS04520 0.84 -1.7
995,173 - QEN71_RS04520 0.84 -1.2
995,173 - QEN71_RS04520 0.84 -1.3
995,173 - QEN71_RS04520 0.84 -0.9
995,173 - QEN71_RS04520 0.84 -3.3
995,173 - QEN71_RS04520 0.84 -0.3
995,173 - QEN71_RS04520 0.84 -0.7
995,173 - QEN71_RS04520 0.84 +0.0
995,173 - QEN71_RS04520 0.84 -1.3
995,173 - QEN71_RS04520 0.84 -0.5
995,173 - QEN71_RS04520 0.84 -1.4
995,173 - QEN71_RS04520 0.84 -1.6
995,173 - QEN71_RS04520 0.84 -1.6
995,173 - QEN71_RS04520 0.84 -1.7
995,173 - QEN71_RS04520 0.84 -0.3
995,173 - QEN71_RS04520 0.84 -2.0
995,173 - QEN71_RS04520 0.84 -2.7
995,173 - QEN71_RS04520 0.84 +0.7
995,173 - QEN71_RS04520 0.84 -1.0
995,173 - QEN71_RS04520 0.84 -1.1
995,173 - QEN71_RS04520 0.84 +1.4
995,173 - QEN71_RS04520 0.84 -0.7
995,173 - QEN71_RS04520 0.84 -2.0
995,173 - QEN71_RS04520 0.84 +0.0
995,175 + QEN71_RS04520 0.85 -1.3
995,175 + QEN71_RS04520 0.85 -1.2
995,175 + QEN71_RS04520 0.85 -0.5
995,175 + QEN71_RS04520 0.85 -1.6
995,175 + QEN71_RS04520 0.85 -0.8
995,175 + QEN71_RS04520 0.85 -1.6
995,175 + QEN71_RS04520 0.85 -1.3
995,175 + QEN71_RS04520 0.85 -1.7
995,176 - QEN71_RS04520 0.85 -1.7
995,176 - QEN71_RS04520 0.85 -2.1
995,176 - QEN71_RS04520 0.85 -2.1
995,176 - QEN71_RS04520 0.85 -1.6
995,254 + -0.7
995,255 - -1.4
995,268 + -0.1
995,268 + -1.1
995,268 + -0.7
995,268 + +0.9
995,269 - -3.0
995,269 - -1.7
995,435 + QEN71_RS04525 0.25 -1.6
995,435 + QEN71_RS04525 0.25 -0.9
995,435 + QEN71_RS04525 0.25 -2.1
995,436 - QEN71_RS04525 0.25 +1.2
995,436 - QEN71_RS04525 0.25 -1.0
995,436 - QEN71_RS04525 0.25 -1.1
995,436 - QEN71_RS04525 0.25 +0.4
995,436 - QEN71_RS04525 0.25 +0.0
995,456 + QEN71_RS04525 0.28 -1.2
995,456 + QEN71_RS04525 0.28 -0.8
995,457 - QEN71_RS04525 0.28 -2.6
995,457 - QEN71_RS04525 0.28 -0.6
995,457 - QEN71_RS04525 0.28 -0.7
995,457 - QEN71_RS04525 0.28 -1.0
995,457 - QEN71_RS04525 0.28 -1.9
995,457 - QEN71_RS04525 0.28 -0.5
995,538 + QEN71_RS04525 0.42 -1.6
995,539 - QEN71_RS04525 0.42 -0.4
995,566 + QEN71_RS04525 0.46 -1.9
995,566 + QEN71_RS04525 0.46 -2.1
995,566 + QEN71_RS04525 0.46 -2.0
995,566 + QEN71_RS04525 0.46 -0.1
995,566 + QEN71_RS04525 0.46 -1.1
995,566 + QEN71_RS04525 0.46 -0.6
995,566 + QEN71_RS04525 0.46 -0.4
995,566 + QEN71_RS04525 0.46 -2.8
995,566 + QEN71_RS04525 0.46 -0.9
995,566 + QEN71_RS04525 0.46 +0.7
995,567 - QEN71_RS04525 0.46 -0.8
995,567 - QEN71_RS04525 0.46 -0.4
995,567 - QEN71_RS04525 0.46 -0.6
995,567 - QEN71_RS04525 0.46 +0.4
995,567 - QEN71_RS04525 0.46 -2.7
995,648 + QEN71_RS04525 0.59 -2.0
995,648 + QEN71_RS04525 0.59 -1.1
995,648 + QEN71_RS04525 0.59 -1.9
995,648 + QEN71_RS04525 0.59 -0.0
995,649 - QEN71_RS04525 0.60 -1.6
995,649 - QEN71_RS04525 0.60 -3.3
995,649 - QEN71_RS04525 0.60 -2.9
995,649 - QEN71_RS04525 0.60 -3.5
995,920 - +0.1
995,976 + -0.6
995,976 + -1.9
995,976 + -1.1
995,976 + -0.1
995,976 + -1.9
995,977 - -0.6
996,029 + +0.4
996,029 + -0.8
996,079 + +0.8
996,079 + -1.5
996,079 + -1.0
996,079 + -1.0
996,079 + -1.3
996,079 + -1.1
996,079 + -1.7
996,079 + -0.2
996,079 + -1.6
996,079 + -0.7
996,079 + -0.3
996,079 + +0.2
996,079 + -1.4
996,079 + -0.8
996,079 + +0.4
996,079 + -2.2
996,079 + +0.0
996,079 + -0.4
996,079 + -2.1
996,081 + -0.3
996,081 + -0.8
996,081 + -2.9
996,081 + -1.2
996,081 + +0.4
996,081 + +2.3
996,081 + -0.6
996,081 + +0.0
996,081 + -2.4
996,081 + -1.1
996,081 + -0.6
996,081 + -1.6
996,081 + -2.9
996,089 + -1.0
996,089 + -1.1
996,249 + QEN71_RS04530 0.19 +0.7
996,249 + QEN71_RS04530 0.19 -0.1
996,249 + QEN71_RS04530 0.19 -1.0
996,359 + QEN71_RS04530 0.37 +0.1
996,359 + QEN71_RS04530 0.37 +0.2
996,359 + QEN71_RS04530 0.37 +0.6
996,359 + QEN71_RS04530 0.37 -0.9
996,359 + QEN71_RS04530 0.37 -0.3
996,359 + QEN71_RS04530 0.37 +0.9
996,419 + QEN71_RS04530 0.46 +0.7
996,419 + QEN71_RS04530 0.46 +0.1
996,419 + QEN71_RS04530 0.46 +0.8
996,419 + QEN71_RS04530 0.46 +0.6
996,419 + QEN71_RS04530 0.46 -1.1
996,419 + QEN71_RS04530 0.46 +0.9
996,449 + QEN71_RS04530 0.51 +1.3
996,808 + -0.7
996,821 + -2.7
996,821 + +0.4
996,821 + -1.1
996,821 + -0.3
996,821 + -3.3
997,054 + -2.2
997,098 + -1.2
997,098 + -1.3
997,199 + +0.0

Or see this region's nucleotide sequence