Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04420 and QEN71_RS04425 are separated by 38 nucleotides QEN71_RS04425 and QEN71_RS04430 are separated by 174 nucleotides QEN71_RS04430 and QEN71_RS04435 are separated by 63 nucleotides QEN71_RS04435 and QEN71_RS04440 are separated by 112 nucleotides
QEN71_RS04420: QEN71_RS04420 - AraC family transcriptional regulator, at 974,582 to 975,409
_RS04420
QEN71_RS04425: QEN71_RS04425 - CreA family protein, at 975,448 to 975,939
_RS04425
QEN71_RS04430: QEN71_RS04430 - tRNA-Asn, at 976,114 to 976,189
_RS04430
QEN71_RS04435: QEN71_RS04435 - tRNA-Asn, at 976,253 to 976,328
_RS04435
QEN71_RS04440: QEN71_RS04440 - ferredoxin family protein, at 976,441 to 976,764
_RS04440
Position (kb) 975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 974.495 kb on + strand at 974.495 kb on + strand at 974.495 kb on + strand at 974.496 kb on - strand at 974.496 kb on - strand at 974.522 kb on + strand at 974.522 kb on + strand at 974.522 kb on + strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.621 kb on - strand at 974.924 kb on - strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.032 kb on - strand, within QEN71_RS04420 at 975.032 kb on - strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.247 kb on - strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.327 kb on + strand at 975.328 kb on - strand at 975.328 kb on - strand at 975.438 kb on + strand at 975.469 kb on - strand at 975.533 kb on + strand, within QEN71_RS04425 at 975.533 kb on + strand, within QEN71_RS04425 at 975.533 kb on + strand, within QEN71_RS04425 at 975.533 kb on + strand, within QEN71_RS04425 at 975.533 kb on + strand, within QEN71_RS04425 at 975.533 kb on + strand, within QEN71_RS04425 at 975.534 kb on - strand, within QEN71_RS04425 at 975.534 kb on - strand, within QEN71_RS04425 at 975.534 kb on - strand, within QEN71_RS04425 at 975.542 kb on + strand, within QEN71_RS04425 at 975.543 kb on - strand, within QEN71_RS04425 at 975.543 kb on - strand, within QEN71_RS04425 at 975.543 kb on - strand, within QEN71_RS04425 at 975.543 kb on - strand, within QEN71_RS04425 at 975.577 kb on + strand, within QEN71_RS04425 at 975.577 kb on + strand, within QEN71_RS04425 at 975.577 kb on + strand, within QEN71_RS04425 at 975.578 kb on - strand, within QEN71_RS04425 at 975.622 kb on + strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.623 kb on - strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.751 kb on + strand, within QEN71_RS04425 at 975.752 kb on - strand, within QEN71_RS04425 at 975.752 kb on - strand, within QEN71_RS04425 at 975.752 kb on - strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.755 kb on + strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.756 kb on - strand, within QEN71_RS04425 at 975.788 kb on + strand, within QEN71_RS04425 at 975.788 kb on + strand, within QEN71_RS04425 at 975.788 kb on + strand, within QEN71_RS04425 at 975.789 kb on - strand, within QEN71_RS04425 at 975.789 kb on - strand, within QEN71_RS04425 at 975.789 kb on - strand, within QEN71_RS04425 at 975.789 kb on - strand, within QEN71_RS04425 at 975.822 kb on + strand, within QEN71_RS04425 at 975.896 kb on - strand at 976.005 kb on + strand at 976.005 kb on + strand at 976.006 kb on - strand at 976.006 kb on - strand at 976.044 kb on + strand at 976.044 kb on + strand at 976.044 kb on + strand at 976.044 kb on + strand at 976.044 kb on + strand at 976.045 kb on - strand at 976.079 kb on - strand at 976.147 kb on - strand, within QEN71_RS04430 at 976.154 kb on - strand, within QEN71_RS04430 at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.211 kb on - strand at 976.215 kb on - strand at 976.215 kb on - strand at 976.381 kb on - strand at 976.381 kb on - strand at 976.381 kb on - strand at 976.401 kb on + strand at 976.402 kb on - strand at 976.410 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.838 kb on + strand at 976.839 kb on - strand at 976.839 kb on - strand at 976.839 kb on - strand at 976.848 kb on + strand at 976.848 kb on + strand at 976.848 kb on + strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.855 kb on + strand at 976.855 kb on + strand at 976.855 kb on + strand at 976.855 kb on + strand at 976.856 kb on - strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.879 kb on + strand at 976.879 kb on + strand at 976.879 kb on + strand at 976.880 kb on - strand at 976.880 kb on - strand at 976.880 kb on - strand at 976.880 kb on - strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.898 kb on + strand at 976.898 kb on + strand at 976.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 974,495 + +0.6 974,495 + +0.7 974,495 + +0.7 974,496 - +1.1 974,496 - -0.3 974,522 + -1.8 974,522 + +0.1 974,522 + +0.6 974,523 - +1.4 974,523 - +0.1 974,523 - -3.3 974,523 - -0.6 974,523 - +0.2 974,545 + -0.0 974,545 + +0.2 974,545 + -0.7 974,545 + +0.6 974,545 + +0.5 974,545 + -2.0 974,545 + +0.3 974,545 + -0.5 974,545 + -0.6 974,546 - -0.2 974,546 - -0.5 974,546 - +0.2 974,546 - +0.6 974,546 - +0.3 974,620 + +0.4 974,620 + -1.8 974,620 + -0.3 974,620 + -0.1 974,620 + +0.2 974,620 + -0.0 974,620 + +1.5 974,620 + +0.4 974,621 - +0.7 974,924 - QEN71_RS04420 0.41 -1.5 975,029 + QEN71_RS04420 0.54 -0.4 975,029 + QEN71_RS04420 0.54 -0.3 975,029 + QEN71_RS04420 0.54 +0.7 975,029 + QEN71_RS04420 0.54 -0.3 975,029 + QEN71_RS04420 0.54 -0.1 975,029 + QEN71_RS04420 0.54 +0.3 975,030 - QEN71_RS04420 0.54 -2.0 975,030 - QEN71_RS04420 0.54 -1.4 975,030 - QEN71_RS04420 0.54 -1.0 975,030 - QEN71_RS04420 0.54 -0.7 975,030 - QEN71_RS04420 0.54 -0.7 975,030 - QEN71_RS04420 0.54 +0.1 975,032 - QEN71_RS04420 0.54 -1.0 975,032 - QEN71_RS04420 0.54 +1.7 975,135 + QEN71_RS04420 0.67 +0.5 975,135 + QEN71_RS04420 0.67 +0.7 975,135 + QEN71_RS04420 0.67 +0.5 975,135 + QEN71_RS04420 0.67 -1.3 975,135 + QEN71_RS04420 0.67 +0.1 975,135 + QEN71_RS04420 0.67 -1.8 975,135 + QEN71_RS04420 0.67 -1.8 975,135 + QEN71_RS04420 0.67 +0.0 975,135 + QEN71_RS04420 0.67 +1.8 975,135 + QEN71_RS04420 0.67 +0.2 975,136 - QEN71_RS04420 0.67 +0.6 975,136 - QEN71_RS04420 0.67 -0.3 975,136 - QEN71_RS04420 0.67 -1.4 975,136 - QEN71_RS04420 0.67 +1.0 975,136 - QEN71_RS04420 0.67 -0.1 975,247 - QEN71_RS04420 0.80 -0.5 975,252 + QEN71_RS04420 0.81 +0.9 975,252 + QEN71_RS04420 0.81 -0.5 975,252 + QEN71_RS04420 0.81 +0.7 975,252 + QEN71_RS04420 0.81 +0.2 975,252 + QEN71_RS04420 0.81 +0.0 975,252 + QEN71_RS04420 0.81 +0.3 975,252 + QEN71_RS04420 0.81 +0.0 975,253 - QEN71_RS04420 0.81 -1.5 975,253 - QEN71_RS04420 0.81 +0.5 975,253 - QEN71_RS04420 0.81 -0.6 975,253 - QEN71_RS04420 0.81 -0.2 975,253 - QEN71_RS04420 0.81 -1.5 975,288 + QEN71_RS04420 0.85 -0.2 975,288 + QEN71_RS04420 0.85 +0.2 975,288 + QEN71_RS04420 0.85 +0.4 975,288 + QEN71_RS04420 0.85 +0.4 975,288 + QEN71_RS04420 0.85 +0.7 975,288 + QEN71_RS04420 0.85 +1.0 975,288 + QEN71_RS04420 0.85 +1.7 975,289 - QEN71_RS04420 0.85 -0.6 975,289 - QEN71_RS04420 0.85 +0.3 975,289 - QEN71_RS04420 0.85 -0.8 975,289 - QEN71_RS04420 0.85 +0.0 975,327 + +1.1 975,328 - +1.6 975,328 - +0.4 975,438 + -1.1 975,469 - -0.9 975,533 + QEN71_RS04425 0.17 +0.9 975,533 + QEN71_RS04425 0.17 +0.1 975,533 + QEN71_RS04425 0.17 -1.0 975,533 + QEN71_RS04425 0.17 -0.3 975,533 + QEN71_RS04425 0.17 +0.3 975,533 + QEN71_RS04425 0.17 -1.0 975,534 - QEN71_RS04425 0.17 -0.5 975,534 - QEN71_RS04425 0.17 -0.7 975,534 - QEN71_RS04425 0.17 -0.4 975,542 + QEN71_RS04425 0.19 +0.2 975,543 - QEN71_RS04425 0.19 -0.9 975,543 - QEN71_RS04425 0.19 +0.8 975,543 - QEN71_RS04425 0.19 +0.3 975,543 - QEN71_RS04425 0.19 -0.3 975,577 + QEN71_RS04425 0.26 -0.1 975,577 + QEN71_RS04425 0.26 +0.4 975,577 + QEN71_RS04425 0.26 +0.1 975,578 - QEN71_RS04425 0.26 +0.1 975,622 + QEN71_RS04425 0.35 -1.9 975,623 - QEN71_RS04425 0.36 -0.3 975,623 - QEN71_RS04425 0.36 -0.6 975,623 - QEN71_RS04425 0.36 -1.1 975,623 - QEN71_RS04425 0.36 +0.2 975,623 - QEN71_RS04425 0.36 +0.0 975,623 - QEN71_RS04425 0.36 +0.3 975,623 - QEN71_RS04425 0.36 +0.2 975,623 - QEN71_RS04425 0.36 -0.5 975,623 - QEN71_RS04425 0.36 +0.1 975,751 + QEN71_RS04425 0.62 +0.5 975,751 + QEN71_RS04425 0.62 -0.0 975,751 + QEN71_RS04425 0.62 +0.0 975,751 + QEN71_RS04425 0.62 -0.9 975,751 + QEN71_RS04425 0.62 +0.3 975,751 + QEN71_RS04425 0.62 -0.2 975,751 + QEN71_RS04425 0.62 +0.2 975,751 + QEN71_RS04425 0.62 +0.1 975,751 + QEN71_RS04425 0.62 -0.4 975,751 + QEN71_RS04425 0.62 +0.5 975,752 - QEN71_RS04425 0.62 -0.8 975,752 - QEN71_RS04425 0.62 +0.3 975,752 - QEN71_RS04425 0.62 +1.0 975,755 + QEN71_RS04425 0.62 +0.0 975,755 + QEN71_RS04425 0.62 +0.1 975,755 + QEN71_RS04425 0.62 -0.7 975,755 + QEN71_RS04425 0.62 +0.7 975,755 + QEN71_RS04425 0.62 -0.2 975,755 + QEN71_RS04425 0.62 -0.3 975,755 + QEN71_RS04425 0.62 -0.6 975,755 + QEN71_RS04425 0.62 +0.9 975,755 + QEN71_RS04425 0.62 +0.6 975,755 + QEN71_RS04425 0.62 -0.1 975,755 + QEN71_RS04425 0.62 -0.5 975,756 - QEN71_RS04425 0.63 +2.0 975,756 - QEN71_RS04425 0.63 -1.3 975,756 - QEN71_RS04425 0.63 -1.8 975,756 - QEN71_RS04425 0.63 -1.2 975,756 - QEN71_RS04425 0.63 +0.5 975,756 - QEN71_RS04425 0.63 -3.2 975,756 - QEN71_RS04425 0.63 -0.3 975,756 - QEN71_RS04425 0.63 +2.4 975,756 - QEN71_RS04425 0.63 +0.5 975,756 - QEN71_RS04425 0.63 +0.3 975,756 - QEN71_RS04425 0.63 -1.5 975,756 - QEN71_RS04425 0.63 +2.5 975,756 - QEN71_RS04425 0.63 -0.5 975,756 - QEN71_RS04425 0.63 +0.0 975,788 + QEN71_RS04425 0.69 +0.4 975,788 + QEN71_RS04425 0.69 -0.4 975,788 + QEN71_RS04425 0.69 +0.3 975,789 - QEN71_RS04425 0.69 -0.9 975,789 - QEN71_RS04425 0.69 +0.0 975,789 - QEN71_RS04425 0.69 -0.3 975,789 - QEN71_RS04425 0.69 -0.1 975,822 + QEN71_RS04425 0.76 +0.1 975,896 - -1.2 976,005 + -0.0 976,005 + -0.0 976,006 - +0.8 976,006 - +0.6 976,044 + -0.8 976,044 + -0.7 976,044 + -1.9 976,044 + +1.0 976,044 + +0.1 976,045 - -0.9 976,079 - +1.2 976,147 - QEN71_RS04430 0.43 +0.7 976,154 - QEN71_RS04430 0.53 +0.9 976,198 - -0.3 976,198 - +0.1 976,198 - -1.2 976,198 - -0.2 976,198 - +0.6 976,198 - +0.3 976,198 - +1.2 976,198 - -0.1 976,198 - -0.3 976,198 - -0.2 976,198 - -1.7 976,198 - +0.6 976,198 - -1.3 976,211 - -0.8 976,215 - -1.6 976,215 - -1.6 976,381 - +0.6 976,381 - +1.0 976,381 - -0.5 976,401 + -1.3 976,402 - +0.4 976,410 + +0.0 976,833 + -0.3 976,833 + +0.0 976,833 + -0.5 976,833 + +1.4 976,833 + -1.7 976,834 - -1.5 976,834 - +0.2 976,834 - +1.3 976,834 - -0.4 976,834 - +2.0 976,834 - -0.3 976,834 - -1.9 976,834 - +3.0 976,838 + -1.4 976,839 - +1.4 976,839 - -2.2 976,839 - +2.5 976,848 + +0.5 976,848 + +0.4 976,848 + -0.5 976,849 - -0.2 976,849 - -1.3 976,849 - +1.5 976,849 - -0.5 976,849 - -2.9 976,855 + +1.0 976,855 + +0.0 976,855 + -1.3 976,855 + +0.6 976,856 - +0.2 976,877 + +0.7 976,877 + -0.8 976,877 + -0.2 976,877 + -0.7 976,877 + +0.4 976,877 + +0.0 976,878 - +0.7 976,878 - -0.9 976,878 - -1.1 976,878 - +0.4 976,878 - -0.2 976,878 - -0.5 976,878 - +1.5 976,878 - -0.3 976,878 - +1.0 976,878 - -1.1 976,879 + -1.0 976,879 + +0.9 976,879 + -1.8 976,880 - +0.3 976,880 - -0.8 976,880 - -1.9 976,880 - +0.1 976,893 + -2.5 976,893 + -0.9 976,893 + -0.6 976,893 + -0.3 976,893 + -0.3 976,894 - +0.3 976,894 - +1.1 976,894 - -1.6 976,894 - +0.1 976,894 - -1.3 976,894 - -0.2 976,898 + -1.3 976,898 + -0.5 976,899 - -0.4
Or see this region's nucleotide sequence