Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03490

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03485 and QEN71_RS03490 are separated by 118 nucleotidesQEN71_RS03490 and QEN71_RS03495 are separated by 198 nucleotides QEN71_RS03485: QEN71_RS03485 - fimbrial protein, at 778,155 to 779,240 _RS03485 QEN71_RS03490: QEN71_RS03490 - fimbria/pilus outer membrane usher protein, at 779,359 to 782,115 _RS03490 QEN71_RS03495: QEN71_RS03495 - fimbria/pilus periplasmic chaperone, at 782,314 to 783,057 _RS03495 Position (kb) 779 780 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 778.371 kb on + strand, within QEN71_RS03485at 778.371 kb on + strand, within QEN71_RS03485at 778.372 kb on - strand, within QEN71_RS03485at 778.372 kb on - strand, within QEN71_RS03485at 778.516 kb on - strand, within QEN71_RS03485at 778.546 kb on - strand, within QEN71_RS03485at 778.609 kb on + strand, within QEN71_RS03485at 778.644 kb on - strand, within QEN71_RS03485at 778.644 kb on - strand, within QEN71_RS03485at 778.652 kb on + strand, within QEN71_RS03485at 778.652 kb on + strand, within QEN71_RS03485at 778.652 kb on + strand, within QEN71_RS03485at 778.695 kb on + strand, within QEN71_RS03485at 778.696 kb on - strand, within QEN71_RS03485at 778.710 kb on - strand, within QEN71_RS03485at 778.740 kb on + strand, within QEN71_RS03485at 778.740 kb on + strand, within QEN71_RS03485at 778.740 kb on + strand, within QEN71_RS03485at 778.741 kb on - strand, within QEN71_RS03485at 778.741 kb on - strand, within QEN71_RS03485at 778.741 kb on - strand, within QEN71_RS03485at 778.741 kb on - strand, within QEN71_RS03485at 778.760 kb on + strand, within QEN71_RS03485at 778.760 kb on + strand, within QEN71_RS03485at 778.760 kb on + strand, within QEN71_RS03485at 778.760 kb on + strand, within QEN71_RS03485at 778.761 kb on - strand, within QEN71_RS03485at 778.761 kb on - strand, within QEN71_RS03485at 778.786 kb on + strand, within QEN71_RS03485at 778.863 kb on + strand, within QEN71_RS03485at 778.863 kb on + strand, within QEN71_RS03485at 778.883 kb on + strand, within QEN71_RS03485at 778.883 kb on + strand, within QEN71_RS03485at 778.884 kb on - strand, within QEN71_RS03485at 778.884 kb on - strand, within QEN71_RS03485at 778.896 kb on - strand, within QEN71_RS03485at 778.897 kb on + strand, within QEN71_RS03485at 778.898 kb on - strand, within QEN71_RS03485at 778.898 kb on - strand, within QEN71_RS03485at 778.907 kb on - strand, within QEN71_RS03485at 778.921 kb on + strand, within QEN71_RS03485at 778.921 kb on + strand, within QEN71_RS03485at 778.922 kb on - strand, within QEN71_RS03485at 778.922 kb on - strand, within QEN71_RS03485at 778.922 kb on - strand, within QEN71_RS03485at 779.011 kb on - strand, within QEN71_RS03485at 779.024 kb on + strand, within QEN71_RS03485at 779.055 kb on + strand, within QEN71_RS03485at 779.055 kb on + strand, within QEN71_RS03485at 779.056 kb on - strand, within QEN71_RS03485at 779.096 kb on + strand, within QEN71_RS03485at 779.096 kb on + strand, within QEN71_RS03485at 779.097 kb on - strand, within QEN71_RS03485at 779.104 kb on + strand, within QEN71_RS03485at 779.104 kb on + strand, within QEN71_RS03485at 779.104 kb on + strand, within QEN71_RS03485at 779.105 kb on - strand, within QEN71_RS03485at 779.241 kb on - strandat 779.245 kb on + strandat 779.283 kb on + strandat 779.284 kb on - strandat 779.284 kb on - strandat 779.284 kb on - strandat 779.284 kb on - strandat 779.424 kb on - strandat 779.424 kb on - strandat 779.446 kb on + strandat 779.446 kb on + strandat 779.495 kb on + strandat 779.495 kb on + strandat 779.511 kb on + strandat 779.650 kb on + strand, within QEN71_RS03490at 779.650 kb on + strand, within QEN71_RS03490at 779.650 kb on + strand, within QEN71_RS03490at 779.650 kb on + strand, within QEN71_RS03490at 779.651 kb on - strand, within QEN71_RS03490at 779.651 kb on - strand, within QEN71_RS03490at 779.651 kb on - strand, within QEN71_RS03490at 779.737 kb on - strand, within QEN71_RS03490at 779.737 kb on - strand, within QEN71_RS03490at 779.748 kb on - strand, within QEN71_RS03490at 779.748 kb on - strand, within QEN71_RS03490at 779.934 kb on + strand, within QEN71_RS03490at 779.934 kb on + strand, within QEN71_RS03490at 779.934 kb on + strand, within QEN71_RS03490at 779.934 kb on + strand, within QEN71_RS03490at 779.935 kb on - strand, within QEN71_RS03490at 779.935 kb on - strand, within QEN71_RS03490at 779.935 kb on - strand, within QEN71_RS03490at 779.935 kb on - strand, within QEN71_RS03490at 779.937 kb on - strand, within QEN71_RS03490at 779.975 kb on + strand, within QEN71_RS03490at 779.976 kb on - strand, within QEN71_RS03490at 779.988 kb on - strand, within QEN71_RS03490at 780.053 kb on + strand, within QEN71_RS03490at 780.147 kb on + strand, within QEN71_RS03490at 780.147 kb on + strand, within QEN71_RS03490at 780.147 kb on + strand, within QEN71_RS03490at 780.147 kb on + strand, within QEN71_RS03490at 780.148 kb on - strand, within QEN71_RS03490at 780.148 kb on - strand, within QEN71_RS03490at 780.148 kb on - strand, within QEN71_RS03490at 780.294 kb on - strand, within QEN71_RS03490at 780.294 kb on - strand, within QEN71_RS03490at 780.301 kb on - strand, within QEN71_RS03490at 780.323 kb on + strand, within QEN71_RS03490at 780.323 kb on + strand, within QEN71_RS03490at 780.323 kb on + strand, within QEN71_RS03490at 780.324 kb on - strand, within QEN71_RS03490at 780.347 kb on + strand, within QEN71_RS03490at 780.363 kb on + strand, within QEN71_RS03490at 780.364 kb on - strand, within QEN71_RS03490at 780.420 kb on + strand, within QEN71_RS03490at 780.420 kb on + strand, within QEN71_RS03490at 780.420 kb on + strand, within QEN71_RS03490at 780.421 kb on - strand, within QEN71_RS03490at 780.548 kb on + strand, within QEN71_RS03490at 780.674 kb on + strand, within QEN71_RS03490at 780.674 kb on + strand, within QEN71_RS03490at 780.701 kb on + strand, within QEN71_RS03490at 780.702 kb on - strand, within QEN71_RS03490at 780.774 kb on + strand, within QEN71_RS03490at 780.775 kb on - strand, within QEN71_RS03490at 780.803 kb on + strand, within QEN71_RS03490at 780.804 kb on - strand, within QEN71_RS03490at 780.804 kb on - strand, within QEN71_RS03490at 780.968 kb on + strand, within QEN71_RS03490at 780.968 kb on + strand, within QEN71_RS03490at 780.969 kb on - strand, within QEN71_RS03490at 780.969 kb on - strand, within QEN71_RS03490at 780.969 kb on - strand, within QEN71_RS03490at 781.061 kb on + strand, within QEN71_RS03490at 781.062 kb on - strand, within QEN71_RS03490at 781.105 kb on - strand, within QEN71_RS03490at 781.130 kb on + strand, within QEN71_RS03490at 781.131 kb on - strand, within QEN71_RS03490at 781.184 kb on + strand, within QEN71_RS03490at 781.184 kb on + strand, within QEN71_RS03490at 781.184 kb on + strand, within QEN71_RS03490at 781.244 kb on + strand, within QEN71_RS03490at 781.244 kb on + strand, within QEN71_RS03490at 781.292 kb on + strand, within QEN71_RS03490at 781.292 kb on + strand, within QEN71_RS03490at 781.332 kb on - strand, within QEN71_RS03490at 781.346 kb on + strand, within QEN71_RS03490at 781.346 kb on + strand, within QEN71_RS03490at 781.347 kb on - strand, within QEN71_RS03490at 781.347 kb on - strand, within QEN71_RS03490at 781.672 kb on + strand, within QEN71_RS03490at 781.673 kb on - strand, within QEN71_RS03490at 781.685 kb on + strand, within QEN71_RS03490at 781.857 kb on + strandat 781.858 kb on - strandat 782.056 kb on + strandat 782.056 kb on + strandat 782.057 kb on - strandat 782.106 kb on + strandat 782.106 kb on + strandat 782.106 kb on + strandat 782.106 kb on + strandat 782.107 kb on - strandat 782.240 kb on + strandat 782.240 kb on + strandat 782.240 kb on + strandat 782.241 kb on - strandat 782.241 kb on - strandat 782.351 kb on + strandat 782.508 kb on - strand, within QEN71_RS03495at 782.508 kb on - strand, within QEN71_RS03495at 782.657 kb on + strand, within QEN71_RS03495at 782.658 kb on - strand, within QEN71_RS03495at 782.757 kb on - strand, within QEN71_RS03495at 782.764 kb on - strand, within QEN71_RS03495at 782.764 kb on - strand, within QEN71_RS03495at 782.928 kb on + strand, within QEN71_RS03495at 782.942 kb on + strand, within QEN71_RS03495at 782.942 kb on + strand, within QEN71_RS03495at 782.943 kb on - strand, within QEN71_RS03495at 783.036 kb on + strandat 783.036 kb on + strandat 783.036 kb on + strandat 783.037 kb on - strandat 783.037 kb on - strandat 783.037 kb on - strandat 783.102 kb on + strandat 783.102 kb on + strandat 783.102 kb on + strandat 783.102 kb on + strandat 783.103 kb on - strandat 783.103 kb on - strandat 783.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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778,371 + QEN71_RS03485 0.20 +0.4
778,371 + QEN71_RS03485 0.20 +1.4
778,372 - QEN71_RS03485 0.20 -1.2
778,372 - QEN71_RS03485 0.20 -1.2
778,516 - QEN71_RS03485 0.33 +0.3
778,546 - QEN71_RS03485 0.36 -0.4
778,609 + QEN71_RS03485 0.42 -0.0
778,644 - QEN71_RS03485 0.45 +0.1
778,644 - QEN71_RS03485 0.45 -0.3
778,652 + QEN71_RS03485 0.46 +1.0
778,652 + QEN71_RS03485 0.46 +0.9
778,652 + QEN71_RS03485 0.46 -0.2
778,695 + QEN71_RS03485 0.50 -0.4
778,696 - QEN71_RS03485 0.50 -0.4
778,710 - QEN71_RS03485 0.51 -0.4
778,740 + QEN71_RS03485 0.54 -0.8
778,740 + QEN71_RS03485 0.54 +0.0
778,740 + QEN71_RS03485 0.54 -0.1
778,741 - QEN71_RS03485 0.54 +0.2
778,741 - QEN71_RS03485 0.54 -1.0
778,741 - QEN71_RS03485 0.54 -0.0
778,741 - QEN71_RS03485 0.54 +0.0
778,760 + QEN71_RS03485 0.56 -0.7
778,760 + QEN71_RS03485 0.56 -0.5
778,760 + QEN71_RS03485 0.56 +0.4
778,760 + QEN71_RS03485 0.56 -0.4
778,761 - QEN71_RS03485 0.56 -1.4
778,761 - QEN71_RS03485 0.56 -0.3
778,786 + QEN71_RS03485 0.58 -1.6
778,863 + QEN71_RS03485 0.65 -0.6
778,863 + QEN71_RS03485 0.65 +0.1
778,883 + QEN71_RS03485 0.67 -0.5
778,883 + QEN71_RS03485 0.67 -0.0
778,884 - QEN71_RS03485 0.67 +1.0
778,884 - QEN71_RS03485 0.67 +0.4
778,896 - QEN71_RS03485 0.68 +2.5
778,897 + QEN71_RS03485 0.68 -0.2
778,898 - QEN71_RS03485 0.68 -1.1
778,898 - QEN71_RS03485 0.68 -0.6
778,907 - QEN71_RS03485 0.69 -0.0
778,921 + QEN71_RS03485 0.71 -1.0
778,921 + QEN71_RS03485 0.71 +0.9
778,922 - QEN71_RS03485 0.71 -0.7
778,922 - QEN71_RS03485 0.71 +0.5
778,922 - QEN71_RS03485 0.71 -0.1
779,011 - QEN71_RS03485 0.79 -0.1
779,024 + QEN71_RS03485 0.80 -0.5
779,055 + QEN71_RS03485 0.83 -2.8
779,055 + QEN71_RS03485 0.83 +0.2
779,056 - QEN71_RS03485 0.83 +0.3
779,096 + QEN71_RS03485 0.87 +0.2
779,096 + QEN71_RS03485 0.87 -0.8
779,097 - QEN71_RS03485 0.87 +0.1
779,104 + QEN71_RS03485 0.87 -0.7
779,104 + QEN71_RS03485 0.87 -0.1
779,104 + QEN71_RS03485 0.87 -0.4
779,105 - QEN71_RS03485 0.87 -0.9
779,241 - -1.7
779,245 + -1.2
779,283 + +0.4
779,284 - +0.7
779,284 - -0.6
779,284 - -0.4
779,284 - -0.0
779,424 - +0.5
779,424 - +0.1
779,446 + +0.7
779,446 + -0.1
779,495 + -0.4
779,495 + -0.5
779,511 + -0.5
779,650 + QEN71_RS03490 0.11 -0.4
779,650 + QEN71_RS03490 0.11 +1.0
779,650 + QEN71_RS03490 0.11 +0.4
779,650 + QEN71_RS03490 0.11 -0.1
779,651 - QEN71_RS03490 0.11 -0.3
779,651 - QEN71_RS03490 0.11 +1.6
779,651 - QEN71_RS03490 0.11 -1.6
779,737 - QEN71_RS03490 0.14 -0.6
779,737 - QEN71_RS03490 0.14 +0.2
779,748 - QEN71_RS03490 0.14 +0.4
779,748 - QEN71_RS03490 0.14 +0.1
779,934 + QEN71_RS03490 0.21 +0.5
779,934 + QEN71_RS03490 0.21 +1.2
779,934 + QEN71_RS03490 0.21 -0.4
779,934 + QEN71_RS03490 0.21 +3.1
779,935 - QEN71_RS03490 0.21 -1.5
779,935 - QEN71_RS03490 0.21 +0.1
779,935 - QEN71_RS03490 0.21 +1.0
779,935 - QEN71_RS03490 0.21 -0.4
779,937 - QEN71_RS03490 0.21 -1.7
779,975 + QEN71_RS03490 0.22 +0.6
779,976 - QEN71_RS03490 0.22 -1.2
779,988 - QEN71_RS03490 0.23 -0.0
780,053 + QEN71_RS03490 0.25 -1.8
780,147 + QEN71_RS03490 0.29 -0.4
780,147 + QEN71_RS03490 0.29 +0.6
780,147 + QEN71_RS03490 0.29 -0.3
780,147 + QEN71_RS03490 0.29 -0.4
780,148 - QEN71_RS03490 0.29 -0.6
780,148 - QEN71_RS03490 0.29 +0.1
780,148 - QEN71_RS03490 0.29 -0.4
780,294 - QEN71_RS03490 0.34 +2.0
780,294 - QEN71_RS03490 0.34 +0.4
780,301 - QEN71_RS03490 0.34 -0.3
780,323 + QEN71_RS03490 0.35 -1.0
780,323 + QEN71_RS03490 0.35 -0.6
780,323 + QEN71_RS03490 0.35 -0.4
780,324 - QEN71_RS03490 0.35 +1.5
780,347 + QEN71_RS03490 0.36 +2.0
780,363 + QEN71_RS03490 0.36 +0.9
780,364 - QEN71_RS03490 0.36 -0.6
780,420 + QEN71_RS03490 0.38 -1.7
780,420 + QEN71_RS03490 0.38 -0.6
780,420 + QEN71_RS03490 0.38 +1.0
780,421 - QEN71_RS03490 0.39 -0.8
780,548 + QEN71_RS03490 0.43 +1.5
780,674 + QEN71_RS03490 0.48 -0.2
780,674 + QEN71_RS03490 0.48 +0.4
780,701 + QEN71_RS03490 0.49 -1.2
780,702 - QEN71_RS03490 0.49 +0.4
780,774 + QEN71_RS03490 0.51 +0.4
780,775 - QEN71_RS03490 0.51 -1.3
780,803 + QEN71_RS03490 0.52 -0.8
780,804 - QEN71_RS03490 0.52 +0.4
780,804 - QEN71_RS03490 0.52 -0.9
780,968 + QEN71_RS03490 0.58 +0.4
780,968 + QEN71_RS03490 0.58 +0.2
780,969 - QEN71_RS03490 0.58 -0.0
780,969 - QEN71_RS03490 0.58 -1.0
780,969 - QEN71_RS03490 0.58 +0.3
781,061 + QEN71_RS03490 0.62 +2.6
781,062 - QEN71_RS03490 0.62 -0.7
781,105 - QEN71_RS03490 0.63 -0.0
781,130 + QEN71_RS03490 0.64 -0.6
781,131 - QEN71_RS03490 0.64 -0.8
781,184 + QEN71_RS03490 0.66 -1.3
781,184 + QEN71_RS03490 0.66 +0.4
781,184 + QEN71_RS03490 0.66 -0.5
781,244 + QEN71_RS03490 0.68 -0.0
781,244 + QEN71_RS03490 0.68 -0.8
781,292 + QEN71_RS03490 0.70 -0.3
781,292 + QEN71_RS03490 0.70 -1.2
781,332 - QEN71_RS03490 0.72 +0.3
781,346 + QEN71_RS03490 0.72 +2.0
781,346 + QEN71_RS03490 0.72 +0.1
781,347 - QEN71_RS03490 0.72 +0.1
781,347 - QEN71_RS03490 0.72 -1.1
781,672 + QEN71_RS03490 0.84 -0.0
781,673 - QEN71_RS03490 0.84 -0.0
781,685 + QEN71_RS03490 0.84 -0.1
781,857 + -0.0
781,858 - -0.3
782,056 + -0.1
782,056 + -0.5
782,057 - -1.4
782,106 + -0.6
782,106 + +0.1
782,106 + +0.1
782,106 + +0.2
782,107 - +0.1
782,240 + -0.8
782,240 + -0.5
782,240 + -0.9
782,241 - -1.0
782,241 - +0.1
782,351 + +0.8
782,508 - QEN71_RS03495 0.26 -2.3
782,508 - QEN71_RS03495 0.26 -0.1
782,657 + QEN71_RS03495 0.46 -0.0
782,658 - QEN71_RS03495 0.46 -0.0
782,757 - QEN71_RS03495 0.60 +0.7
782,764 - QEN71_RS03495 0.60 -1.3
782,764 - QEN71_RS03495 0.60 +0.2
782,928 + QEN71_RS03495 0.83 +1.2
782,942 + QEN71_RS03495 0.84 -1.9
782,942 + QEN71_RS03495 0.84 +2.3
782,943 - QEN71_RS03495 0.85 -0.3
783,036 + -0.4
783,036 + +0.4
783,036 + +0.9
783,037 - -0.0
783,037 - +0.7
783,037 - -0.3
783,102 + -1.0
783,102 + -0.1
783,102 + -0.2
783,102 + -0.4
783,103 - +0.9
783,103 - -0.8
783,103 - -0.8

Or see this region's nucleotide sequence