Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19085 and LRK53_RS19090 overlap by 11 nucleotides LRK53_RS19090 and LRK53_RS19095 are separated by 111 nucleotides LRK53_RS19095 and LRK53_RS19100 are separated by 57 nucleotides LRK53_RS19100 and LRK53_RS19105 are separated by 99 nucleotides
LRK53_RS19085: LRK53_RS19085 - hypothetical protein, at 202,485 to 205,382
_RS19085
LRK53_RS19090: LRK53_RS19090 - hypothetical protein, at 205,372 to 206,109
_RS19090
LRK53_RS19095: LRK53_RS19095 - hypothetical protein, at 206,221 to 206,472
_RS19095
LRK53_RS19100: LRK53_RS19100 - hypothetical protein, at 206,530 to 206,901
_RS19100
LRK53_RS19105: LRK53_RS19105 - hypothetical protein, at 207,001 to 207,444
_RS19105
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.468 kb on - strand, within LRK53_RS19085 at 204.475 kb on + strand, within LRK53_RS19085 at 204.475 kb on + strand, within LRK53_RS19085 at 204.475 kb on + strand, within LRK53_RS19085 at 204.475 kb on + strand, within LRK53_RS19085 at 204.476 kb on - strand, within LRK53_RS19085 at 204.604 kb on - strand, within LRK53_RS19085 at 204.726 kb on + strand, within LRK53_RS19085 at 204.727 kb on - strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.915 kb on + strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.916 kb on - strand, within LRK53_RS19085 at 204.939 kb on + strand, within LRK53_RS19085 at 204.939 kb on + strand, within LRK53_RS19085 at 204.939 kb on + strand, within LRK53_RS19085 at 204.939 kb on + strand, within LRK53_RS19085 at 204.939 kb on + strand, within LRK53_RS19085 at 205.095 kb on + strand at 205.095 kb on + strand at 205.095 kb on + strand at 205.096 kb on - strand at 205.096 kb on - strand at 205.096 kb on - strand at 205.096 kb on - strand at 205.096 kb on - strand at 205.096 kb on - strand at 205.451 kb on - strand, within LRK53_RS19090 at 205.451 kb on - strand, within LRK53_RS19090 at 205.451 kb on - strand, within LRK53_RS19090 at 205.562 kb on - strand, within LRK53_RS19090 at 205.682 kb on - strand, within LRK53_RS19090 at 205.682 kb on - strand, within LRK53_RS19090 at 205.682 kb on - strand, within LRK53_RS19090 at 205.726 kb on + strand, within LRK53_RS19090 at 205.726 kb on + strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.997 kb on - strand, within LRK53_RS19090 at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.055 kb on + strand at 206.056 kb on - strand at 206.100 kb on + strand at 206.100 kb on + strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.239 kb on + strand at 206.240 kb on - strand at 206.240 kb on - strand at 206.240 kb on - strand at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.740 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.843 kb on - strand, within LRK53_RS19100 at 206.967 kb on + strand at 206.968 kb on - strand at 206.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 204,468 - LRK53_RS19085 0.68 +0.1 204,475 + LRK53_RS19085 0.69 -1.2 204,475 + LRK53_RS19085 0.69 -1.2 204,475 + LRK53_RS19085 0.69 -0.9 204,475 + LRK53_RS19085 0.69 -0.2 204,476 - LRK53_RS19085 0.69 -0.1 204,604 - LRK53_RS19085 0.73 -0.2 204,726 + LRK53_RS19085 0.77 -2.0 204,727 - LRK53_RS19085 0.77 +0.7 204,915 + LRK53_RS19085 0.84 -0.4 204,915 + LRK53_RS19085 0.84 -0.6 204,915 + LRK53_RS19085 0.84 -0.4 204,915 + LRK53_RS19085 0.84 -1.0 204,915 + LRK53_RS19085 0.84 -0.9 204,915 + LRK53_RS19085 0.84 -0.6 204,915 + LRK53_RS19085 0.84 +1.1 204,915 + LRK53_RS19085 0.84 -0.4 204,915 + LRK53_RS19085 0.84 -1.8 204,915 + LRK53_RS19085 0.84 -1.5 204,915 + LRK53_RS19085 0.84 -1.0 204,916 - LRK53_RS19085 0.84 +0.3 204,916 - LRK53_RS19085 0.84 +0.8 204,916 - LRK53_RS19085 0.84 -0.2 204,916 - LRK53_RS19085 0.84 -1.4 204,916 - LRK53_RS19085 0.84 -1.7 204,916 - LRK53_RS19085 0.84 -1.3 204,916 - LRK53_RS19085 0.84 -1.8 204,916 - LRK53_RS19085 0.84 -0.6 204,916 - LRK53_RS19085 0.84 +1.1 204,916 - LRK53_RS19085 0.84 +0.3 204,916 - LRK53_RS19085 0.84 -2.0 204,916 - LRK53_RS19085 0.84 -2.7 204,916 - LRK53_RS19085 0.84 +0.4 204,916 - LRK53_RS19085 0.84 -1.4 204,916 - LRK53_RS19085 0.84 +0.1 204,916 - LRK53_RS19085 0.84 -0.9 204,916 - LRK53_RS19085 0.84 +0.1 204,916 - LRK53_RS19085 0.84 +0.3 204,916 - LRK53_RS19085 0.84 -0.3 204,916 - LRK53_RS19085 0.84 -0.8 204,916 - LRK53_RS19085 0.84 -0.7 204,939 + LRK53_RS19085 0.85 -0.8 204,939 + LRK53_RS19085 0.85 -0.6 204,939 + LRK53_RS19085 0.85 -0.2 204,939 + LRK53_RS19085 0.85 -2.1 204,939 + LRK53_RS19085 0.85 -2.2 205,095 + +1.4 205,095 + +0.3 205,095 + +0.2 205,096 - -0.6 205,096 - -0.4 205,096 - +0.3 205,096 - -3.4 205,096 - -1.4 205,096 - +2.4 205,451 - LRK53_RS19090 0.11 +0.8 205,451 - LRK53_RS19090 0.11 -0.4 205,451 - LRK53_RS19090 0.11 -0.4 205,562 - LRK53_RS19090 0.26 -0.7 205,682 - LRK53_RS19090 0.42 -1.0 205,682 - LRK53_RS19090 0.42 +0.1 205,682 - LRK53_RS19090 0.42 -0.6 205,726 + LRK53_RS19090 0.48 +0.6 205,726 + LRK53_RS19090 0.48 +0.9 205,727 - LRK53_RS19090 0.48 -0.7 205,727 - LRK53_RS19090 0.48 -1.3 205,727 - LRK53_RS19090 0.48 -1.2 205,727 - LRK53_RS19090 0.48 -1.5 205,727 - LRK53_RS19090 0.48 -3.1 205,753 + LRK53_RS19090 0.52 -0.2 205,753 + LRK53_RS19090 0.52 -1.3 205,753 + LRK53_RS19090 0.52 -1.2 205,753 + LRK53_RS19090 0.52 -1.4 205,753 + LRK53_RS19090 0.52 -1.7 205,753 + LRK53_RS19090 0.52 +0.4 205,754 - LRK53_RS19090 0.52 +2.7 205,754 - LRK53_RS19090 0.52 +0.1 205,754 - LRK53_RS19090 0.52 -2.1 205,754 - LRK53_RS19090 0.52 -2.2 205,754 - LRK53_RS19090 0.52 -0.5 205,996 + LRK53_RS19090 0.85 +0.3 205,996 + LRK53_RS19090 0.85 -1.0 205,996 + LRK53_RS19090 0.85 -1.5 205,996 + LRK53_RS19090 0.85 -2.4 205,996 + LRK53_RS19090 0.85 -1.2 205,996 + LRK53_RS19090 0.85 -1.8 205,996 + LRK53_RS19090 0.85 -0.2 205,997 - LRK53_RS19090 0.85 +0.6 206,041 + -0.7 206,041 + -0.2 206,041 + -1.2 206,041 + -0.7 206,041 + +1.2 206,041 + +0.4 206,041 + -2.5 206,041 + +1.4 206,041 + -0.7 206,042 - -1.6 206,042 - -0.4 206,042 - +0.1 206,042 - +0.8 206,042 - -2.4 206,042 - +1.4 206,042 - -1.7 206,042 - -1.1 206,042 - -0.4 206,042 - -1.5 206,042 - -0.2 206,042 - -0.2 206,042 - -2.1 206,042 - -1.1 206,042 - -0.9 206,042 - +1.8 206,042 - -1.9 206,042 - -1.0 206,049 + -0.9 206,049 + -0.8 206,049 + +1.3 206,049 + -0.5 206,049 + -0.4 206,049 + -0.3 206,050 - +0.7 206,050 - -2.6 206,050 - -0.9 206,050 - -0.7 206,050 - +0.4 206,055 + +0.5 206,056 - -0.2 206,100 + -0.2 206,100 + -0.6 206,101 - -1.0 206,101 - -1.3 206,101 - -0.2 206,101 - +0.4 206,101 - -2.1 206,101 - -2.0 206,101 - -1.2 206,101 - +0.0 206,147 + -2.9 206,147 + -0.6 206,147 + -1.2 206,147 + -1.2 206,147 + -2.4 206,147 + -0.0 206,147 + -1.4 206,147 + -0.4 206,147 + -0.7 206,147 + +0.1 206,147 + -1.2 206,147 + -2.1 206,147 + -0.9 206,147 + +0.1 206,147 + -1.1 206,148 - -1.2 206,148 - -0.8 206,148 - -1.4 206,148 - -0.9 206,148 - -1.9 206,148 - +0.8 206,148 - -0.7 206,148 - -0.7 206,148 - +0.6 206,148 - -1.4 206,148 - -1.3 206,148 - -0.4 206,148 - +0.6 206,148 - +0.3 206,239 + -1.7 206,240 - -0.4 206,240 - -2.2 206,240 - +1.6 206,374 + LRK53_RS19095 0.61 -0.8 206,374 + LRK53_RS19095 0.61 -0.2 206,374 + LRK53_RS19095 0.61 -1.4 206,374 + LRK53_RS19095 0.61 +0.5 206,374 + LRK53_RS19095 0.61 -0.5 206,374 + LRK53_RS19095 0.61 +0.8 206,374 + LRK53_RS19095 0.61 -1.2 206,374 + LRK53_RS19095 0.61 -1.6 206,374 + LRK53_RS19095 0.61 -0.7 206,374 + LRK53_RS19095 0.61 -1.2 206,374 + LRK53_RS19095 0.61 -1.6 206,375 - LRK53_RS19095 0.61 -0.2 206,375 - LRK53_RS19095 0.61 -0.2 206,375 - LRK53_RS19095 0.61 -0.4 206,375 - LRK53_RS19095 0.61 -1.1 206,375 - LRK53_RS19095 0.61 -0.9 206,375 - LRK53_RS19095 0.61 -2.0 206,375 - LRK53_RS19095 0.61 -1.4 206,375 - LRK53_RS19095 0.61 -0.7 206,581 + LRK53_RS19100 0.14 +0.0 206,581 + LRK53_RS19100 0.14 -0.2 206,581 + LRK53_RS19100 0.14 +1.3 206,582 - LRK53_RS19100 0.14 -0.4 206,582 - LRK53_RS19100 0.14 -1.4 206,740 + LRK53_RS19100 0.56 +0.8 206,842 + LRK53_RS19100 0.84 -0.0 206,842 + LRK53_RS19100 0.84 -1.3 206,843 - LRK53_RS19100 0.84 +0.8 206,967 + -0.9 206,968 - -0.7 206,968 - -0.7
Or see this region's nucleotide sequence