Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18960 and LRK53_RS18965 are separated by 78 nucleotides LRK53_RS18965 and LRK53_RS18970 overlap by 4 nucleotides LRK53_RS18970 and LRK53_RS18975 are separated by 100 nucleotides LRK53_RS18975 and LRK53_RS18980 are separated by 176 nucleotides
LRK53_RS18960: LRK53_RS18960 - hypothetical protein, at 185,849 to 186,130
_RS18960
LRK53_RS18965: LRK53_RS18965 - hypothetical protein, at 186,209 to 186,907
_RS18965
LRK53_RS18970: LRK53_RS18970 - site-specific DNA-methyltransferase, at 186,904 to 188,163
_RS18970
LRK53_RS18975: LRK53_RS18975 - hypothetical protein, at 188,264 to 188,539
_RS18975
LRK53_RS18980: LRK53_RS18980 - hypothetical protein, at 188,716 to 189,102
_RS18980
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 185.921 kb on + strand, within LRK53_RS18960 at 186.065 kb on + strand, within LRK53_RS18960 at 186.128 kb on + strand at 186.128 kb on + strand at 186.129 kb on - strand at 186.129 kb on - strand at 186.193 kb on + strand at 186.284 kb on + strand, within LRK53_RS18965 at 186.284 kb on + strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.494 kb on + strand, within LRK53_RS18965 at 186.495 kb on - strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.726 kb on - strand, within LRK53_RS18965 at 186.726 kb on - strand, within LRK53_RS18965 at 186.781 kb on - strand, within LRK53_RS18965 at 186.781 kb on - strand, within LRK53_RS18965 at 186.926 kb on + strand at 186.961 kb on + strand at 186.961 kb on + strand at 186.962 kb on - strand at 187.041 kb on + strand, within LRK53_RS18970 at 187.041 kb on + strand, within LRK53_RS18970 at 187.041 kb on + strand, within LRK53_RS18970 at 187.042 kb on - strand, within LRK53_RS18970 at 187.117 kb on - strand, within LRK53_RS18970 at 187.384 kb on + strand, within LRK53_RS18970 at 187.384 kb on + strand, within LRK53_RS18970 at 187.384 kb on + strand, within LRK53_RS18970 at 187.385 kb on - strand, within LRK53_RS18970 at 187.385 kb on - strand, within LRK53_RS18970 at 187.504 kb on + strand, within LRK53_RS18970 at 187.504 kb on + strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.772 kb on - strand, within LRK53_RS18970 at 187.848 kb on + strand, within LRK53_RS18970 at 187.848 kb on + strand, within LRK53_RS18970 at 187.964 kb on - strand, within LRK53_RS18970 at 188.055 kb on + strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.077 kb on + strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.477 kb on + strand, within LRK53_RS18975 at 188.582 kb on + strand at 188.582 kb on + strand at 188.583 kb on - strand at 188.648 kb on + strand at 188.648 kb on + strand at 188.649 kb on - strand at 188.649 kb on - strand at 188.649 kb on - strand at 188.798 kb on - strand, within LRK53_RS18980 at 188.798 kb on - strand, within LRK53_RS18980 at 188.894 kb on - strand, within LRK53_RS18980 at 188.905 kb on + strand, within LRK53_RS18980 at 189.029 kb on + strand, within LRK53_RS18980 at 189.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 185,921 + LRK53_RS18960 0.26 -1.0 186,065 + LRK53_RS18960 0.77 -1.4 186,128 + -2.0 186,128 + -1.5 186,129 - -1.4 186,129 - -0.9 186,193 + -0.1 186,284 + LRK53_RS18965 0.11 +0.2 186,284 + LRK53_RS18965 0.11 -1.3 186,285 - LRK53_RS18965 0.11 -0.5 186,285 - LRK53_RS18965 0.11 -0.8 186,285 - LRK53_RS18965 0.11 +0.6 186,285 - LRK53_RS18965 0.11 -0.8 186,285 - LRK53_RS18965 0.11 -0.8 186,363 + LRK53_RS18965 0.22 +0.8 186,363 + LRK53_RS18965 0.22 -0.8 186,363 + LRK53_RS18965 0.22 +0.0 186,363 + LRK53_RS18965 0.22 -0.9 186,363 + LRK53_RS18965 0.22 +0.6 186,364 - LRK53_RS18965 0.22 -2.8 186,364 - LRK53_RS18965 0.22 -1.7 186,364 - LRK53_RS18965 0.22 -1.7 186,364 - LRK53_RS18965 0.22 -1.8 186,364 - LRK53_RS18965 0.22 -1.5 186,364 - LRK53_RS18965 0.22 +0.2 186,364 - LRK53_RS18965 0.22 -0.4 186,494 + LRK53_RS18965 0.41 -3.6 186,495 - LRK53_RS18965 0.41 -2.5 186,605 + LRK53_RS18965 0.57 -1.3 186,605 + LRK53_RS18965 0.57 -0.6 186,605 + LRK53_RS18965 0.57 -0.9 186,605 + LRK53_RS18965 0.57 +1.1 186,605 + LRK53_RS18965 0.57 -0.7 186,605 + LRK53_RS18965 0.57 -0.8 186,605 + LRK53_RS18965 0.57 +0.3 186,605 + LRK53_RS18965 0.57 -0.3 186,605 + LRK53_RS18965 0.57 +0.2 186,605 + LRK53_RS18965 0.57 -2.5 186,605 + LRK53_RS18965 0.57 -0.4 186,605 + LRK53_RS18965 0.57 -1.6 186,605 + LRK53_RS18965 0.57 -2.0 186,605 + LRK53_RS18965 0.57 -2.1 186,605 + LRK53_RS18965 0.57 -1.2 186,605 + LRK53_RS18965 0.57 -1.1 186,605 + LRK53_RS18965 0.57 -2.2 186,605 + LRK53_RS18965 0.57 -0.8 186,605 + LRK53_RS18965 0.57 +0.8 186,605 + LRK53_RS18965 0.57 -1.5 186,605 + LRK53_RS18965 0.57 -2.4 186,606 - LRK53_RS18965 0.57 -0.8 186,606 - LRK53_RS18965 0.57 -1.2 186,606 - LRK53_RS18965 0.57 -1.8 186,606 - LRK53_RS18965 0.57 -1.4 186,606 - LRK53_RS18965 0.57 -0.6 186,606 - LRK53_RS18965 0.57 +0.4 186,606 - LRK53_RS18965 0.57 +0.3 186,606 - LRK53_RS18965 0.57 -0.1 186,606 - LRK53_RS18965 0.57 +1.2 186,606 - LRK53_RS18965 0.57 -0.7 186,606 - LRK53_RS18965 0.57 -2.1 186,606 - LRK53_RS18965 0.57 -1.4 186,606 - LRK53_RS18965 0.57 -0.5 186,606 - LRK53_RS18965 0.57 -1.1 186,606 - LRK53_RS18965 0.57 -1.8 186,606 - LRK53_RS18965 0.57 +0.1 186,606 - LRK53_RS18965 0.57 -1.0 186,606 - LRK53_RS18965 0.57 -1.5 186,606 - LRK53_RS18965 0.57 -1.1 186,606 - LRK53_RS18965 0.57 +1.4 186,725 + LRK53_RS18965 0.74 -0.8 186,725 + LRK53_RS18965 0.74 -0.8 186,725 + LRK53_RS18965 0.74 -1.5 186,725 + LRK53_RS18965 0.74 -0.7 186,726 - LRK53_RS18965 0.74 -0.1 186,726 - LRK53_RS18965 0.74 -1.6 186,781 - LRK53_RS18965 0.82 +1.6 186,781 - LRK53_RS18965 0.82 -2.3 186,926 + -1.8 186,961 + +0.2 186,961 + -1.5 186,962 - -0.9 187,041 + LRK53_RS18970 0.11 +0.1 187,041 + LRK53_RS18970 0.11 +0.4 187,041 + LRK53_RS18970 0.11 +0.6 187,042 - LRK53_RS18970 0.11 -0.9 187,117 - LRK53_RS18970 0.17 -0.8 187,384 + LRK53_RS18970 0.38 -1.6 187,384 + LRK53_RS18970 0.38 -0.5 187,384 + LRK53_RS18970 0.38 -0.7 187,385 - LRK53_RS18970 0.38 -0.8 187,385 - LRK53_RS18970 0.38 -0.8 187,504 + LRK53_RS18970 0.48 -0.7 187,504 + LRK53_RS18970 0.48 -1.3 187,505 - LRK53_RS18970 0.48 -0.9 187,505 - LRK53_RS18970 0.48 +1.4 187,505 - LRK53_RS18970 0.48 -2.5 187,505 - LRK53_RS18970 0.48 -1.7 187,505 - LRK53_RS18970 0.48 -0.4 187,772 - LRK53_RS18970 0.69 -1.2 187,848 + LRK53_RS18970 0.75 -0.8 187,848 + LRK53_RS18970 0.75 -1.2 187,964 - LRK53_RS18970 0.84 -0.3 188,055 + +1.4 188,056 - -0.9 188,056 - -0.8 188,056 - -1.4 188,056 - -2.3 188,056 - -2.3 188,056 - -2.1 188,077 + -3.3 188,242 - +1.4 188,242 - -1.1 188,242 - -1.3 188,242 - -1.1 188,477 + LRK53_RS18975 0.77 -0.9 188,582 + -2.0 188,582 + -1.9 188,583 - -1.1 188,648 + -1.3 188,648 + +0.1 188,649 - -0.1 188,649 - -0.9 188,649 - -1.1 188,798 - LRK53_RS18980 0.21 +0.4 188,798 - LRK53_RS18980 0.21 -2.2 188,894 - LRK53_RS18980 0.46 -0.2 188,905 + LRK53_RS18980 0.49 -1.1 189,029 + LRK53_RS18980 0.81 -1.8 189,148 - +1.2
Or see this region's nucleotide sequence