Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18935

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18925 and LRK53_RS18930 overlap by 22 nucleotidesLRK53_RS18930 and LRK53_RS18935 overlap by 1 nucleotidesLRK53_RS18935 and LRK53_RS18940 are separated by 121 nucleotidesLRK53_RS18940 and LRK53_RS18945 are separated by 11 nucleotides LRK53_RS18925: LRK53_RS18925 - hypothetical protein, at 181,292 to 181,768 _RS18925 LRK53_RS18930: LRK53_RS18930 - hypothetical protein, at 181,747 to 182,415 _RS18930 LRK53_RS18935: LRK53_RS18935 - PD-(D/E)XK nuclease family protein, at 182,415 to 183,017 _RS18935 LRK53_RS18940: LRK53_RS18940 - hypothetical protein, at 183,139 to 183,600 _RS18940 LRK53_RS18945: LRK53_RS18945 - hypothetical protein, at 183,612 to 183,833 _RS18945 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 181.619 kb on + strand, within LRK53_RS18925at 181.619 kb on + strand, within LRK53_RS18925at 181.619 kb on + strand, within LRK53_RS18925at 181.619 kb on + strand, within LRK53_RS18925at 181.619 kb on + strand, within LRK53_RS18925at 181.619 kb on + strand, within LRK53_RS18925at 181.619 kb on + strand, within LRK53_RS18925at 181.620 kb on - strand, within LRK53_RS18925at 181.620 kb on - strand, within LRK53_RS18925at 181.620 kb on - strand, within LRK53_RS18925at 181.620 kb on - strand, within LRK53_RS18925at 181.620 kb on - strand, within LRK53_RS18925at 181.620 kb on - strand, within LRK53_RS18925at 181.620 kb on - strand, within LRK53_RS18925at 181.622 kb on + strand, within LRK53_RS18925at 181.622 kb on + strand, within LRK53_RS18925at 181.622 kb on + strand, within LRK53_RS18925at 181.622 kb on + strand, within LRK53_RS18925at 181.622 kb on + strand, within LRK53_RS18925at 181.622 kb on + strand, within LRK53_RS18925at 181.623 kb on - strand, within LRK53_RS18925at 181.623 kb on - strand, within LRK53_RS18925at 181.623 kb on - strand, within LRK53_RS18925at 181.623 kb on - strand, within LRK53_RS18925at 181.623 kb on - strand, within LRK53_RS18925at 181.787 kb on + strandat 181.787 kb on + strandat 181.788 kb on - strandat 181.788 kb on - strandat 181.872 kb on + strand, within LRK53_RS18930at 181.873 kb on - strand, within LRK53_RS18930at 182.092 kb on + strand, within LRK53_RS18930at 182.092 kb on + strand, within LRK53_RS18930at 182.092 kb on + strand, within LRK53_RS18930at 182.092 kb on + strand, within LRK53_RS18930at 182.093 kb on - strand, within LRK53_RS18930at 182.093 kb on - strand, within LRK53_RS18930at 182.093 kb on - strand, within LRK53_RS18930at 182.237 kb on - strand, within LRK53_RS18930at 182.237 kb on - strand, within LRK53_RS18930at 182.237 kb on - strand, within LRK53_RS18930at 182.349 kb on + strandat 182.349 kb on + strandat 182.460 kb on + strandat 182.460 kb on + strandat 182.460 kb on + strandat 182.460 kb on + strandat 182.461 kb on - strandat 182.461 kb on - strandat 182.461 kb on - strandat 182.461 kb on - strandat 182.461 kb on - strandat 182.520 kb on + strand, within LRK53_RS18935at 182.521 kb on - strand, within LRK53_RS18935at 182.521 kb on - strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.589 kb on + strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.590 kb on - strand, within LRK53_RS18935at 182.664 kb on + strand, within LRK53_RS18935at 182.664 kb on + strand, within LRK53_RS18935at 182.664 kb on + strand, within LRK53_RS18935at 182.664 kb on + strand, within LRK53_RS18935at 182.665 kb on - strand, within LRK53_RS18935at 182.665 kb on - strand, within LRK53_RS18935at 182.665 kb on - strand, within LRK53_RS18935at 182.665 kb on - strand, within LRK53_RS18935at 182.665 kb on - strand, within LRK53_RS18935at 182.665 kb on - strand, within LRK53_RS18935at 182.665 kb on - strand, within LRK53_RS18935at 182.709 kb on + strand, within LRK53_RS18935at 182.798 kb on + strand, within LRK53_RS18935at 182.799 kb on - strand, within LRK53_RS18935at 182.799 kb on - strand, within LRK53_RS18935at 182.799 kb on - strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.829 kb on + strand, within LRK53_RS18935at 182.830 kb on - strand, within LRK53_RS18935at 182.830 kb on - strand, within LRK53_RS18935at 182.830 kb on - strand, within LRK53_RS18935at 182.830 kb on - strand, within LRK53_RS18935at 182.830 kb on - strand, within LRK53_RS18935at 182.830 kb on - strand, within LRK53_RS18935at 182.830 kb on - strand, within LRK53_RS18935at 182.883 kb on + strand, within LRK53_RS18935at 182.956 kb on - strand, within LRK53_RS18935at 183.133 kb on + strandat 183.134 kb on - strandat 183.134 kb on - strandat 183.134 kb on - strandat 183.134 kb on - strandat 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.311 kb on - strand, within LRK53_RS18940at 183.311 kb on - strand, within LRK53_RS18940at 183.325 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.624 kb on + strandat 183.810 kb on + strand, within LRK53_RS18945at 183.811 kb on - strandat 183.811 kb on - strandat 183.811 kb on - strandat 183.811 kb on - strandat 183.873 kb on - strandat 183.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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181,619 + LRK53_RS18925 0.69 -1.6
181,619 + LRK53_RS18925 0.69 -1.4
181,619 + LRK53_RS18925 0.69 -0.9
181,619 + LRK53_RS18925 0.69 -1.8
181,619 + LRK53_RS18925 0.69 +2.4
181,619 + LRK53_RS18925 0.69 -0.5
181,619 + LRK53_RS18925 0.69 -0.2
181,620 - LRK53_RS18925 0.69 +1.6
181,620 - LRK53_RS18925 0.69 +2.4
181,620 - LRK53_RS18925 0.69 -0.9
181,620 - LRK53_RS18925 0.69 -0.5
181,620 - LRK53_RS18925 0.69 +0.1
181,620 - LRK53_RS18925 0.69 +0.1
181,620 - LRK53_RS18925 0.69 -1.3
181,622 + LRK53_RS18925 0.69 -0.2
181,622 + LRK53_RS18925 0.69 -3.1
181,622 + LRK53_RS18925 0.69 +0.8
181,622 + LRK53_RS18925 0.69 -1.1
181,622 + LRK53_RS18925 0.69 -1.2
181,622 + LRK53_RS18925 0.69 -0.5
181,623 - LRK53_RS18925 0.69 -0.5
181,623 - LRK53_RS18925 0.69 +1.4
181,623 - LRK53_RS18925 0.69 -2.4
181,623 - LRK53_RS18925 0.69 -0.4
181,623 - LRK53_RS18925 0.69 +0.7
181,787 + -0.2
181,787 + -0.4
181,788 - -1.5
181,788 - -0.6
181,872 + LRK53_RS18930 0.19 -0.1
181,873 - LRK53_RS18930 0.19 -0.4
182,092 + LRK53_RS18930 0.52 -1.8
182,092 + LRK53_RS18930 0.52 -0.1
182,092 + LRK53_RS18930 0.52 -0.9
182,092 + LRK53_RS18930 0.52 -0.4
182,093 - LRK53_RS18930 0.52 -0.4
182,093 - LRK53_RS18930 0.52 -0.3
182,093 - LRK53_RS18930 0.52 +1.0
182,237 - LRK53_RS18930 0.73 +0.8
182,237 - LRK53_RS18930 0.73 -1.6
182,237 - LRK53_RS18930 0.73 -1.2
182,349 + -1.5
182,349 + -0.8
182,460 + -0.9
182,460 + +0.8
182,460 + -0.6
182,460 + -1.1
182,461 - -0.3
182,461 - -1.1
182,461 - -1.6
182,461 - -2.5
182,461 - -1.3
182,520 + LRK53_RS18935 0.17 -0.4
182,521 - LRK53_RS18935 0.18 -0.3
182,521 - LRK53_RS18935 0.18 +0.2
182,589 + LRK53_RS18935 0.29 -1.5
182,589 + LRK53_RS18935 0.29 -0.4
182,589 + LRK53_RS18935 0.29 +0.2
182,589 + LRK53_RS18935 0.29 -1.8
182,589 + LRK53_RS18935 0.29 -0.2
182,589 + LRK53_RS18935 0.29 -1.5
182,589 + LRK53_RS18935 0.29 +2.0
182,589 + LRK53_RS18935 0.29 -0.7
182,589 + LRK53_RS18935 0.29 -1.1
182,590 - LRK53_RS18935 0.29 -0.6
182,590 - LRK53_RS18935 0.29 -0.1
182,590 - LRK53_RS18935 0.29 -2.7
182,590 - LRK53_RS18935 0.29 -0.7
182,590 - LRK53_RS18935 0.29 +1.2
182,590 - LRK53_RS18935 0.29 +0.4
182,590 - LRK53_RS18935 0.29 +1.0
182,590 - LRK53_RS18935 0.29 -0.9
182,590 - LRK53_RS18935 0.29 -1.7
182,590 - LRK53_RS18935 0.29 -2.5
182,590 - LRK53_RS18935 0.29 -0.4
182,664 + LRK53_RS18935 0.41 -0.8
182,664 + LRK53_RS18935 0.41 -1.4
182,664 + LRK53_RS18935 0.41 -0.8
182,664 + LRK53_RS18935 0.41 +1.1
182,665 - LRK53_RS18935 0.41 -0.6
182,665 - LRK53_RS18935 0.41 -0.9
182,665 - LRK53_RS18935 0.41 -1.3
182,665 - LRK53_RS18935 0.41 +0.4
182,665 - LRK53_RS18935 0.41 +0.4
182,665 - LRK53_RS18935 0.41 +0.5
182,665 - LRK53_RS18935 0.41 +1.1
182,709 + LRK53_RS18935 0.49 -0.8
182,798 + LRK53_RS18935 0.64 -0.3
182,799 - LRK53_RS18935 0.64 -0.8
182,799 - LRK53_RS18935 0.64 +0.6
182,799 - LRK53_RS18935 0.64 +1.6
182,829 + LRK53_RS18935 0.69 -2.0
182,829 + LRK53_RS18935 0.69 -0.9
182,829 + LRK53_RS18935 0.69 +1.2
182,829 + LRK53_RS18935 0.69 -1.3
182,829 + LRK53_RS18935 0.69 -0.8
182,829 + LRK53_RS18935 0.69 +0.1
182,829 + LRK53_RS18935 0.69 -0.2
182,829 + LRK53_RS18935 0.69 -0.6
182,830 - LRK53_RS18935 0.69 +2.4
182,830 - LRK53_RS18935 0.69 -0.5
182,830 - LRK53_RS18935 0.69 -3.3
182,830 - LRK53_RS18935 0.69 +0.1
182,830 - LRK53_RS18935 0.69 -0.1
182,830 - LRK53_RS18935 0.69 -0.8
182,830 - LRK53_RS18935 0.69 -0.8
182,883 + LRK53_RS18935 0.78 -1.0
182,956 - LRK53_RS18935 0.90 -0.2
183,133 + -1.3
183,134 - -1.0
183,134 - +1.8
183,134 - -0.4
183,134 - -0.5
183,310 + LRK53_RS18940 0.37 -1.2
183,310 + LRK53_RS18940 0.37 -1.1
183,310 + LRK53_RS18940 0.37 -1.6
183,310 + LRK53_RS18940 0.37 -0.3
183,310 + LRK53_RS18940 0.37 -0.6
183,311 - LRK53_RS18940 0.37 -0.5
183,311 - LRK53_RS18940 0.37 +1.0
183,325 + LRK53_RS18940 0.40 -1.1
183,397 + LRK53_RS18940 0.56 -2.3
183,397 + LRK53_RS18940 0.56 +2.1
183,397 + LRK53_RS18940 0.56 +0.1
183,397 + LRK53_RS18940 0.56 -1.7
183,397 + LRK53_RS18940 0.56 -0.9
183,397 + LRK53_RS18940 0.56 -0.1
183,397 + LRK53_RS18940 0.56 -1.6
183,398 - LRK53_RS18940 0.56 -3.0
183,398 - LRK53_RS18940 0.56 -0.6
183,398 - LRK53_RS18940 0.56 -1.1
183,398 - LRK53_RS18940 0.56 -1.5
183,398 - LRK53_RS18940 0.56 -1.4
183,398 - LRK53_RS18940 0.56 -1.7
183,398 - LRK53_RS18940 0.56 -1.7
183,398 - LRK53_RS18940 0.56 +0.8
183,398 - LRK53_RS18940 0.56 -1.7
183,398 - LRK53_RS18940 0.56 -0.6
183,398 - LRK53_RS18940 0.56 -0.5
183,624 + +0.3
183,810 + LRK53_RS18945 0.89 -1.5
183,811 - +0.1
183,811 - -0.4
183,811 - +1.7
183,811 - +0.2
183,873 - +0.3
183,890 + +1.3

Or see this region's nucleotide sequence