Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18690

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18685 and LRK53_RS18690 are separated by 54 nucleotidesLRK53_RS18690 and LRK53_RS18695 are separated by 84 nucleotidesLRK53_RS18695 and LRK53_RS18700 are separated by 97 nucleotides LRK53_RS18685: LRK53_RS18685 - error-prone DNA polymerase, at 123,100 to 126,165 _RS18685 LRK53_RS18690: LRK53_RS18690 - hypothetical protein, at 126,220 to 126,939 _RS18690 LRK53_RS18695: LRK53_RS18695 - hypothetical protein, at 127,024 to 127,788 _RS18695 LRK53_RS18700: LRK53_RS18700 - H-NS histone family protein, at 127,886 to 128,320 _RS18700 Position (kb) 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 125.287 kb on + strand, within LRK53_RS18685at 125.287 kb on + strand, within LRK53_RS18685at 125.287 kb on + strand, within LRK53_RS18685at 125.287 kb on + strand, within LRK53_RS18685at 125.288 kb on - strand, within LRK53_RS18685at 125.288 kb on - strand, within LRK53_RS18685at 125.299 kb on + strand, within LRK53_RS18685at 125.299 kb on + strand, within LRK53_RS18685at 125.299 kb on + strand, within LRK53_RS18685at 125.300 kb on - strand, within LRK53_RS18685at 125.365 kb on + strand, within LRK53_RS18685at 125.365 kb on + strand, within LRK53_RS18685at 125.366 kb on - strand, within LRK53_RS18685at 125.366 kb on - strand, within LRK53_RS18685at 125.366 kb on - strand, within LRK53_RS18685at 125.366 kb on - strand, within LRK53_RS18685at 125.456 kb on + strand, within LRK53_RS18685at 125.484 kb on - strand, within LRK53_RS18685at 125.484 kb on - strand, within LRK53_RS18685at 125.514 kb on - strand, within LRK53_RS18685at 125.855 kb on - strand, within LRK53_RS18685at 125.855 kb on - strand, within LRK53_RS18685at 126.175 kb on + strandat 126.176 kb on - strandat 126.221 kb on + strandat 126.221 kb on + strandat 126.221 kb on + strandat 126.221 kb on + strandat 126.222 kb on - strandat 126.222 kb on - strandat 126.222 kb on - strandat 126.222 kb on - strandat 126.222 kb on - strandat 126.464 kb on + strand, within LRK53_RS18690at 126.465 kb on - strand, within LRK53_RS18690at 126.482 kb on - strand, within LRK53_RS18690at 126.482 kb on - strand, within LRK53_RS18690at 126.496 kb on + strand, within LRK53_RS18690at 126.497 kb on - strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.529 kb on + strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.530 kb on - strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.533 kb on + strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.534 kb on - strand, within LRK53_RS18690at 126.551 kb on + strand, within LRK53_RS18690at 126.551 kb on + strand, within LRK53_RS18690at 126.551 kb on + strand, within LRK53_RS18690at 126.551 kb on + strand, within LRK53_RS18690at 126.551 kb on + strand, within LRK53_RS18690at 126.552 kb on - strand, within LRK53_RS18690at 126.552 kb on - strand, within LRK53_RS18690at 126.552 kb on - strand, within LRK53_RS18690at 126.552 kb on - strand, within LRK53_RS18690at 126.833 kb on + strand, within LRK53_RS18690at 126.834 kb on - strand, within LRK53_RS18690at 126.834 kb on - strand, within LRK53_RS18690at 126.837 kb on + strand, within LRK53_RS18690at 126.837 kb on + strand, within LRK53_RS18690at 126.838 kb on - strand, within LRK53_RS18690at 126.838 kb on - strand, within LRK53_RS18690at 126.838 kb on - strand, within LRK53_RS18690at 126.838 kb on - strand, within LRK53_RS18690at 126.838 kb on - strand, within LRK53_RS18690at 126.838 kb on - strand, within LRK53_RS18690at 126.915 kb on + strandat 126.915 kb on + strandat 126.916 kb on - strandat 126.916 kb on - strandat 126.916 kb on - strandat 126.916 kb on - strandat 127.126 kb on + strand, within LRK53_RS18695at 127.126 kb on + strand, within LRK53_RS18695at 127.127 kb on - strand, within LRK53_RS18695at 127.127 kb on - strand, within LRK53_RS18695at 127.127 kb on - strand, within LRK53_RS18695at 127.127 kb on - strand, within LRK53_RS18695at 127.127 kb on - strand, within LRK53_RS18695at 127.147 kb on + strand, within LRK53_RS18695at 127.147 kb on + strand, within LRK53_RS18695at 127.147 kb on + strand, within LRK53_RS18695at 127.147 kb on + strand, within LRK53_RS18695at 127.147 kb on + strand, within LRK53_RS18695at 127.148 kb on - strand, within LRK53_RS18695at 127.148 kb on - strand, within LRK53_RS18695at 127.148 kb on - strand, within LRK53_RS18695at 127.148 kb on - strand, within LRK53_RS18695at 127.148 kb on - strand, within LRK53_RS18695at 127.148 kb on - strand, within LRK53_RS18695at 127.199 kb on + strand, within LRK53_RS18695at 127.199 kb on + strand, within LRK53_RS18695at 127.199 kb on + strand, within LRK53_RS18695at 127.199 kb on + strand, within LRK53_RS18695at 127.199 kb on + strand, within LRK53_RS18695at 127.200 kb on - strand, within LRK53_RS18695at 127.274 kb on + strand, within LRK53_RS18695at 127.274 kb on + strand, within LRK53_RS18695at 127.274 kb on + strand, within LRK53_RS18695at 127.275 kb on - strand, within LRK53_RS18695at 127.275 kb on - strand, within LRK53_RS18695at 127.275 kb on - strand, within LRK53_RS18695at 127.523 kb on + strand, within LRK53_RS18695at 127.523 kb on + strand, within LRK53_RS18695at 127.523 kb on + strand, within LRK53_RS18695at 127.524 kb on - strand, within LRK53_RS18695at 127.524 kb on - strand, within LRK53_RS18695at 127.635 kb on + strand, within LRK53_RS18695at 127.636 kb on - strand, within LRK53_RS18695at 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.788 kb on + strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.789 kb on - strandat 127.821 kb on + strandat 127.826 kb on + strandat 127.827 kb on - strandat 127.827 kb on - strandat 127.827 kb on - strandat 127.827 kb on - strandat 127.830 kb on - strandat 127.880 kb on + strandat 127.880 kb on + strandat 127.881 kb on - strandat 127.881 kb on - strandat 127.936 kb on - strand, within LRK53_RS18700at 127.936 kb on - strand, within LRK53_RS18700

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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125,287 + LRK53_RS18685 0.71 -0.2
125,287 + LRK53_RS18685 0.71 +1.6
125,287 + LRK53_RS18685 0.71 -2.4
125,287 + LRK53_RS18685 0.71 -2.2
125,288 - LRK53_RS18685 0.71 -0.2
125,288 - LRK53_RS18685 0.71 -0.8
125,299 + LRK53_RS18685 0.72 -1.3
125,299 + LRK53_RS18685 0.72 -1.4
125,299 + LRK53_RS18685 0.72 -0.6
125,300 - LRK53_RS18685 0.72 +0.4
125,365 + LRK53_RS18685 0.74 -1.4
125,365 + LRK53_RS18685 0.74 -0.2
125,366 - LRK53_RS18685 0.74 +1.2
125,366 - LRK53_RS18685 0.74 -1.9
125,366 - LRK53_RS18685 0.74 -1.0
125,366 - LRK53_RS18685 0.74 -0.8
125,456 + LRK53_RS18685 0.77 -0.4
125,484 - LRK53_RS18685 0.78 -0.4
125,484 - LRK53_RS18685 0.78 -0.9
125,514 - LRK53_RS18685 0.79 -1.4
125,855 - LRK53_RS18685 0.90 -1.6
125,855 - LRK53_RS18685 0.90 +0.4
126,175 + -0.7
126,176 - -0.3
126,221 + -1.2
126,221 + +1.4
126,221 + -0.5
126,221 + -0.1
126,222 - +0.8
126,222 - -2.1
126,222 - -1.2
126,222 - -0.8
126,222 - +2.1
126,464 + LRK53_RS18690 0.34 -0.4
126,465 - LRK53_RS18690 0.34 -2.4
126,482 - LRK53_RS18690 0.36 -1.5
126,482 - LRK53_RS18690 0.36 +0.6
126,496 + LRK53_RS18690 0.38 -0.1
126,497 - LRK53_RS18690 0.38 -1.8
126,529 + LRK53_RS18690 0.43 -2.3
126,529 + LRK53_RS18690 0.43 -1.8
126,529 + LRK53_RS18690 0.43 -0.3
126,529 + LRK53_RS18690 0.43 +0.4
126,529 + LRK53_RS18690 0.43 +0.1
126,529 + LRK53_RS18690 0.43 -1.6
126,529 + LRK53_RS18690 0.43 -1.9
126,529 + LRK53_RS18690 0.43 +0.1
126,529 + LRK53_RS18690 0.43 -0.4
126,530 - LRK53_RS18690 0.43 -0.7
126,530 - LRK53_RS18690 0.43 -0.4
126,530 - LRK53_RS18690 0.43 -0.8
126,530 - LRK53_RS18690 0.43 -3.0
126,530 - LRK53_RS18690 0.43 -1.3
126,530 - LRK53_RS18690 0.43 -1.4
126,530 - LRK53_RS18690 0.43 -0.8
126,530 - LRK53_RS18690 0.43 -1.1
126,530 - LRK53_RS18690 0.43 -0.8
126,530 - LRK53_RS18690 0.43 -1.2
126,530 - LRK53_RS18690 0.43 -0.5
126,530 - LRK53_RS18690 0.43 +0.4
126,533 + LRK53_RS18690 0.43 -1.6
126,533 + LRK53_RS18690 0.43 -1.4
126,533 + LRK53_RS18690 0.43 +0.6
126,533 + LRK53_RS18690 0.43 -1.5
126,533 + LRK53_RS18690 0.43 +0.1
126,533 + LRK53_RS18690 0.43 -2.0
126,533 + LRK53_RS18690 0.43 -0.6
126,533 + LRK53_RS18690 0.43 +1.2
126,533 + LRK53_RS18690 0.43 -1.1
126,533 + LRK53_RS18690 0.43 +0.0
126,533 + LRK53_RS18690 0.43 -2.5
126,533 + LRK53_RS18690 0.43 -2.4
126,533 + LRK53_RS18690 0.43 -1.3
126,533 + LRK53_RS18690 0.43 -1.5
126,534 - LRK53_RS18690 0.44 -0.9
126,534 - LRK53_RS18690 0.44 -0.3
126,534 - LRK53_RS18690 0.44 -0.2
126,534 - LRK53_RS18690 0.44 -0.6
126,534 - LRK53_RS18690 0.44 -0.1
126,534 - LRK53_RS18690 0.44 -1.1
126,534 - LRK53_RS18690 0.44 +1.4
126,534 - LRK53_RS18690 0.44 -0.2
126,534 - LRK53_RS18690 0.44 -1.7
126,534 - LRK53_RS18690 0.44 -1.8
126,534 - LRK53_RS18690 0.44 -1.3
126,534 - LRK53_RS18690 0.44 -0.4
126,551 + LRK53_RS18690 0.46 -1.9
126,551 + LRK53_RS18690 0.46 +0.1
126,551 + LRK53_RS18690 0.46 -1.4
126,551 + LRK53_RS18690 0.46 -0.6
126,551 + LRK53_RS18690 0.46 +0.8
126,552 - LRK53_RS18690 0.46 +1.4
126,552 - LRK53_RS18690 0.46 -0.6
126,552 - LRK53_RS18690 0.46 -2.2
126,552 - LRK53_RS18690 0.46 -0.6
126,833 + LRK53_RS18690 0.85 -2.8
126,834 - LRK53_RS18690 0.85 -1.1
126,834 - LRK53_RS18690 0.85 -1.8
126,837 + LRK53_RS18690 0.86 -0.1
126,837 + LRK53_RS18690 0.86 +0.1
126,838 - LRK53_RS18690 0.86 -2.3
126,838 - LRK53_RS18690 0.86 +0.3
126,838 - LRK53_RS18690 0.86 -0.4
126,838 - LRK53_RS18690 0.86 +2.4
126,838 - LRK53_RS18690 0.86 +0.1
126,838 - LRK53_RS18690 0.86 -0.4
126,915 + +1.2
126,915 + -0.1
126,916 - -0.8
126,916 - -1.2
126,916 - -0.4
126,916 - -0.8
127,126 + LRK53_RS18695 0.13 -0.4
127,126 + LRK53_RS18695 0.13 -1.9
127,127 - LRK53_RS18695 0.13 -1.8
127,127 - LRK53_RS18695 0.13 +0.6
127,127 - LRK53_RS18695 0.13 -0.4
127,127 - LRK53_RS18695 0.13 -0.3
127,127 - LRK53_RS18695 0.13 +1.3
127,147 + LRK53_RS18695 0.16 -0.5
127,147 + LRK53_RS18695 0.16 -2.3
127,147 + LRK53_RS18695 0.16 -1.3
127,147 + LRK53_RS18695 0.16 +0.2
127,147 + LRK53_RS18695 0.16 -1.6
127,148 - LRK53_RS18695 0.16 +0.4
127,148 - LRK53_RS18695 0.16 -1.5
127,148 - LRK53_RS18695 0.16 -1.1
127,148 - LRK53_RS18695 0.16 -1.2
127,148 - LRK53_RS18695 0.16 -0.6
127,148 - LRK53_RS18695 0.16 -0.2
127,199 + LRK53_RS18695 0.23 -1.8
127,199 + LRK53_RS18695 0.23 -0.1
127,199 + LRK53_RS18695 0.23 +0.1
127,199 + LRK53_RS18695 0.23 -1.7
127,199 + LRK53_RS18695 0.23 +0.8
127,200 - LRK53_RS18695 0.23 +0.3
127,274 + LRK53_RS18695 0.33 -0.9
127,274 + LRK53_RS18695 0.33 -2.3
127,274 + LRK53_RS18695 0.33 -1.2
127,275 - LRK53_RS18695 0.33 -0.6
127,275 - LRK53_RS18695 0.33 +0.1
127,275 - LRK53_RS18695 0.33 +1.4
127,523 + LRK53_RS18695 0.65 +0.8
127,523 + LRK53_RS18695 0.65 -0.2
127,523 + LRK53_RS18695 0.65 +0.1
127,524 - LRK53_RS18695 0.65 -2.5
127,524 - LRK53_RS18695 0.65 -0.6
127,635 + LRK53_RS18695 0.80 -0.1
127,636 - LRK53_RS18695 0.80 -1.3
127,788 + -0.5
127,788 + -1.7
127,788 + -0.6
127,788 + +0.4
127,788 + +2.4
127,788 + -2.2
127,788 + -1.0
127,788 + +0.6
127,788 + +0.8
127,788 + -0.6
127,788 + -0.4
127,788 + -0.5
127,788 + -0.8
127,788 + -2.1
127,788 + -3.4
127,789 - -0.6
127,789 - -4.2
127,789 - -1.8
127,789 - -0.5
127,789 - -2.4
127,789 - +1.7
127,789 - +0.1
127,789 - +1.1
127,789 - -1.8
127,789 - -0.3
127,789 - -2.5
127,789 - -2.7
127,789 - -0.8
127,789 - -1.7
127,789 - +0.7
127,789 - -0.6
127,821 + -0.4
127,826 + -0.2
127,827 - -1.8
127,827 - -1.1
127,827 - +1.4
127,827 - -2.5
127,830 - -0.8
127,880 + -0.2
127,880 + -1.5
127,881 - -2.1
127,881 - +0.6
127,936 - LRK53_RS18700 0.11 -1.2
127,936 - LRK53_RS18700 0.11 -1.5

Or see this region's nucleotide sequence