Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18420 and LRK53_RS18425 are separated by 101 nucleotides LRK53_RS18425 and LRK53_RS18430 are separated by 97 nucleotides LRK53_RS18430 and LRK53_RS18435 are separated by 563 nucleotides
LRK53_RS18420: LRK53_RS18420 - hypothetical protein, at 59,210 to 59,743
_RS18420
LRK53_RS18425: LRK53_RS18425 - hypothetical protein, at 59,845 to 60,381
_RS18425
LRK53_RS18430: LRK53_RS18430 - hypothetical protein, at 60,479 to 61,420
_RS18430
LRK53_RS18435: LRK53_RS18435 - replicative DNA helicase, at 61,984 to 63,387
_RS18435
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.499 kb on - strand, within LRK53_RS18420 at 59.570 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.773 kb on - strand at 59.955 kb on + strand, within LRK53_RS18425 at 59.955 kb on + strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.978 kb on + strand, within LRK53_RS18425 at 60.005 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.425 kb on + strand at 60.426 kb on - strand at 60.593 kb on + strand, within LRK53_RS18430 at 60.593 kb on + strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.672 kb on - strand, within LRK53_RS18430 at 60.897 kb on - strand, within LRK53_RS18430 at 61.076 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.524 kb on - strand at 61.524 kb on - strand at 61.524 kb on - strand at 61.595 kb on - strand at 61.652 kb on + strand at 61.652 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.665 kb on - strand at 61.665 kb on - strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.721 kb on - strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.832 kb on - strand at 61.832 kb on - strand at 62.017 kb on + strand at 62.018 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.115 kb on + strand at 62.149 kb on + strand, within LRK53_RS18435 at 62.278 kb on + strand, within LRK53_RS18435 at 62.278 kb on + strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.413 kb on + strand, within LRK53_RS18435 at 62.414 kb on - strand, within LRK53_RS18435
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 59,499 - LRK53_RS18420 0.54 +0.9 59,570 + LRK53_RS18420 0.67 +1.0 59,654 + LRK53_RS18420 0.83 -2.8 59,654 + LRK53_RS18420 0.83 +0.9 59,655 - LRK53_RS18420 0.83 +2.0 59,655 - LRK53_RS18420 0.83 +0.3 59,655 - LRK53_RS18420 0.83 -0.5 59,656 + LRK53_RS18420 0.84 -1.7 59,656 + LRK53_RS18420 0.84 +1.6 59,656 + LRK53_RS18420 0.84 -1.3 59,656 + LRK53_RS18420 0.84 -0.4 59,656 + LRK53_RS18420 0.84 -0.9 59,656 + LRK53_RS18420 0.84 -1.1 59,656 + LRK53_RS18420 0.84 +0.4 59,656 + LRK53_RS18420 0.84 -0.2 59,657 - LRK53_RS18420 0.84 -1.6 59,657 - LRK53_RS18420 0.84 -1.4 59,657 - LRK53_RS18420 0.84 -0.5 59,657 - LRK53_RS18420 0.84 -1.4 59,694 + +1.2 59,694 + +1.4 59,694 + +1.4 59,694 + -0.6 59,695 - -1.7 59,695 - -0.6 59,695 - +1.1 59,695 - -0.9 59,695 - +0.9 59,695 - -1.3 59,773 - -1.6 59,955 + LRK53_RS18425 0.20 -2.1 59,955 + LRK53_RS18425 0.20 -1.4 59,956 - LRK53_RS18425 0.21 +0.8 59,956 - LRK53_RS18425 0.21 +1.4 59,978 + LRK53_RS18425 0.25 -0.1 60,005 + LRK53_RS18425 0.30 -0.2 60,033 + LRK53_RS18425 0.35 -1.6 60,033 + LRK53_RS18425 0.35 +0.9 60,033 + LRK53_RS18425 0.35 -0.2 60,033 + LRK53_RS18425 0.35 -0.8 60,033 + LRK53_RS18425 0.35 -1.7 60,033 + LRK53_RS18425 0.35 -1.1 60,033 + LRK53_RS18425 0.35 -0.1 60,033 + LRK53_RS18425 0.35 -0.0 60,033 + LRK53_RS18425 0.35 -0.7 60,033 + LRK53_RS18425 0.35 +1.6 60,033 + LRK53_RS18425 0.35 -0.6 60,033 + LRK53_RS18425 0.35 -1.3 60,033 + LRK53_RS18425 0.35 +0.6 60,034 - LRK53_RS18425 0.35 -1.4 60,034 - LRK53_RS18425 0.35 -0.7 60,034 - LRK53_RS18425 0.35 -1.1 60,034 - LRK53_RS18425 0.35 -1.0 60,034 - LRK53_RS18425 0.35 -1.5 60,034 - LRK53_RS18425 0.35 -0.7 60,034 - LRK53_RS18425 0.35 -0.1 60,034 - LRK53_RS18425 0.35 -1.0 60,034 - LRK53_RS18425 0.35 -0.0 60,034 - LRK53_RS18425 0.35 -0.7 60,034 - LRK53_RS18425 0.35 +0.4 60,425 + -1.6 60,426 - +0.9 60,593 + LRK53_RS18430 0.12 -1.4 60,593 + LRK53_RS18430 0.12 +0.4 60,594 - LRK53_RS18430 0.12 +1.4 60,594 - LRK53_RS18430 0.12 -1.6 60,671 + LRK53_RS18430 0.20 +0.1 60,671 + LRK53_RS18430 0.20 -1.0 60,671 + LRK53_RS18430 0.20 -0.4 60,672 - LRK53_RS18430 0.20 -2.6 60,897 - LRK53_RS18430 0.44 +0.6 61,076 + LRK53_RS18430 0.63 -1.8 61,206 + LRK53_RS18430 0.77 -1.6 61,206 + LRK53_RS18430 0.77 -0.6 61,250 + LRK53_RS18430 0.82 -0.9 61,250 + LRK53_RS18430 0.82 -1.6 61,251 - LRK53_RS18430 0.82 -0.6 61,251 - LRK53_RS18430 0.82 -0.1 61,251 - LRK53_RS18430 0.82 +0.4 61,251 - LRK53_RS18430 0.82 -1.1 61,523 + -0.4 61,523 + -0.7 61,523 + -1.5 61,523 + -1.1 61,523 + +0.3 61,524 - -2.5 61,524 - -0.4 61,524 - +0.4 61,595 - -0.6 61,652 + +0.9 61,652 + -0.8 61,664 + -1.2 61,664 + +0.6 61,664 + -1.1 61,664 + -1.6 61,665 - -0.6 61,665 - +0.9 61,720 + -1.4 61,720 + -1.3 61,720 + +0.7 61,720 + +1.6 61,720 + -1.6 61,721 - -0.6 61,741 + -0.1 61,741 + +1.9 61,741 + +0.1 61,741 + -1.3 61,741 + +0.3 61,741 + -0.1 61,741 + -0.7 61,742 - +1.0 61,742 - -1.0 61,742 - -0.8 61,742 - -0.9 61,742 - -1.1 61,742 - -1.6 61,742 - -1.4 61,742 - +0.4 61,742 - -1.3 61,742 - -1.4 61,742 - -0.9 61,742 - +0.9 61,742 - -1.6 61,742 - -0.1 61,832 - -0.4 61,832 - -1.4 62,017 + +0.0 62,018 - +0.1 62,053 - -2.3 62,053 - +0.3 62,053 - -0.4 62,053 - -0.9 62,115 + -1.1 62,149 + LRK53_RS18435 0.12 -0.1 62,278 + LRK53_RS18435 0.21 -0.2 62,278 + LRK53_RS18435 0.21 -2.5 62,279 - LRK53_RS18435 0.21 -1.1 62,279 - LRK53_RS18435 0.21 -0.7 62,279 - LRK53_RS18435 0.21 -1.3 62,279 - LRK53_RS18435 0.21 -0.9 62,413 + LRK53_RS18435 0.31 -0.3 62,414 - LRK53_RS18435 0.31 +0.6
Or see this region's nucleotide sequence