Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18415 and LRK53_RS18420 are separated by 137 nucleotides LRK53_RS18420 and LRK53_RS18425 are separated by 101 nucleotides LRK53_RS18425 and LRK53_RS18430 are separated by 97 nucleotides
LRK53_RS18415: LRK53_RS18415 - hypothetical protein, at 58,590 to 59,072
_RS18415
LRK53_RS18420: LRK53_RS18420 - hypothetical protein, at 59,210 to 59,743
_RS18420
LRK53_RS18425: LRK53_RS18425 - hypothetical protein, at 59,845 to 60,381
_RS18425
LRK53_RS18430: LRK53_RS18430 - hypothetical protein, at 60,479 to 61,420
_RS18430
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.093 kb on + strand at 59.093 kb on + strand at 59.094 kb on - strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.288 kb on + strand, within LRK53_RS18420 at 59.499 kb on - strand, within LRK53_RS18420 at 59.570 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.773 kb on - strand at 59.955 kb on + strand, within LRK53_RS18425 at 59.955 kb on + strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.978 kb on + strand, within LRK53_RS18425 at 60.005 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.425 kb on + strand at 60.593 kb on + strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.672 kb on - strand, within LRK53_RS18430 at 60.897 kb on - strand, within LRK53_RS18430 at 61.076 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 59,093 + -0.4 59,093 + -0.6 59,094 - +0.6 59,195 + -1.2 59,195 + -0.6 59,195 + -1.2 59,196 - -1.6 59,196 - -1.2 59,196 - +1.1 59,196 - +0.7 59,196 - -1.0 59,224 + -0.3 59,224 + -0.9 59,224 + -0.6 59,224 + -0.8 59,224 + -1.4 59,288 + LRK53_RS18420 0.15 -1.9 59,499 - LRK53_RS18420 0.54 +0.8 59,570 + LRK53_RS18420 0.67 +0.9 59,654 + LRK53_RS18420 0.83 -2.8 59,654 + LRK53_RS18420 0.83 +0.8 59,655 - LRK53_RS18420 0.83 +2.0 59,655 - LRK53_RS18420 0.83 +0.3 59,655 - LRK53_RS18420 0.83 -0.5 59,656 + LRK53_RS18420 0.84 -1.8 59,656 + LRK53_RS18420 0.84 -1.3 59,656 + LRK53_RS18420 0.84 -0.4 59,656 + LRK53_RS18420 0.84 -0.9 59,656 + LRK53_RS18420 0.84 -1.2 59,656 + LRK53_RS18420 0.84 +0.4 59,656 + LRK53_RS18420 0.84 -0.2 59,657 - LRK53_RS18420 0.84 -1.7 59,657 - LRK53_RS18420 0.84 -1.4 59,657 - LRK53_RS18420 0.84 -0.5 59,657 - LRK53_RS18420 0.84 -1.4 59,694 + +1.2 59,694 + +1.4 59,694 + +1.4 59,694 + -0.6 59,695 - -1.8 59,695 - -0.6 59,695 - +1.1 59,695 - -0.9 59,695 - -1.3 59,773 - -1.6 59,955 + LRK53_RS18425 0.20 -2.1 59,955 + LRK53_RS18425 0.20 -1.4 59,956 - LRK53_RS18425 0.21 +0.7 59,956 - LRK53_RS18425 0.21 +1.4 59,978 + LRK53_RS18425 0.25 -0.2 60,005 + LRK53_RS18425 0.30 -0.2 60,033 + LRK53_RS18425 0.35 -1.7 60,033 + LRK53_RS18425 0.35 +0.8 60,033 + LRK53_RS18425 0.35 -0.2 60,033 + LRK53_RS18425 0.35 -0.9 60,033 + LRK53_RS18425 0.35 -1.8 60,033 + LRK53_RS18425 0.35 -1.2 60,033 + LRK53_RS18425 0.35 -0.1 60,033 + LRK53_RS18425 0.35 -0.8 60,033 + LRK53_RS18425 0.35 +1.6 60,033 + LRK53_RS18425 0.35 -0.6 60,033 + LRK53_RS18425 0.35 -1.4 60,034 - LRK53_RS18425 0.35 -1.5 60,034 - LRK53_RS18425 0.35 -0.8 60,034 - LRK53_RS18425 0.35 -1.2 60,034 - LRK53_RS18425 0.35 -1.1 60,034 - LRK53_RS18425 0.35 -1.5 60,034 - LRK53_RS18425 0.35 -0.8 60,034 - LRK53_RS18425 0.35 -0.2 60,034 - LRK53_RS18425 0.35 -1.1 60,034 - LRK53_RS18425 0.35 -0.1 60,034 - LRK53_RS18425 0.35 -0.8 60,425 + -1.6 60,593 + LRK53_RS18430 0.12 -1.4 60,594 - LRK53_RS18430 0.12 +1.4 60,594 - LRK53_RS18430 0.12 -1.7 60,671 + LRK53_RS18430 0.20 -1.1 60,671 + LRK53_RS18430 0.20 -0.4 60,672 - LRK53_RS18430 0.20 -2.6 60,897 - LRK53_RS18430 0.44 +0.6 61,076 + LRK53_RS18430 0.63 -1.8 61,206 + LRK53_RS18430 0.77 -1.7 61,250 + LRK53_RS18430 0.82 -0.9 61,250 + LRK53_RS18430 0.82 -1.6 61,251 - LRK53_RS18430 0.82 -0.6 61,251 - LRK53_RS18430 0.82 +0.4 61,251 - LRK53_RS18430 0.82 -1.1
Or see this region's nucleotide sequence