Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18145 and LRK53_RS18150 are separated by 14 nucleotides LRK53_RS18150 and LRK53_RS18155 overlap by 4 nucleotides
LRK53_RS18145: LRK53_RS18145 - DHHA1 domain-containing protein, at 2,971 to 4,749
_RS18145
LRK53_RS18150: LRK53_RS18150 - hypothetical protein, at 4,764 to 5,423
_RS18150
LRK53_RS18155: LRK53_RS18155 - hypothetical protein, at 5,420 to 6,601
_RS18155
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3.844 kb on + strand, within LRK53_RS18145 at 3.844 kb on + strand, within LRK53_RS18145 at 3.844 kb on + strand, within LRK53_RS18145 at 3.844 kb on + strand, within LRK53_RS18145 at 3.844 kb on + strand, within LRK53_RS18145 at 3.844 kb on + strand, within LRK53_RS18145 at 3.844 kb on + strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 3.845 kb on - strand, within LRK53_RS18145 at 4.673 kb on - strand at 4.758 kb on + strand at 4.758 kb on + strand at 4.758 kb on + strand at 4.758 kb on + strand at 4.758 kb on + strand at 4.758 kb on + strand at 4.759 kb on - strand at 4.759 kb on - strand at 4.759 kb on - strand at 4.759 kb on - strand at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.421 kb on + strand at 5.421 kb on + strand at 5.421 kb on + strand at 5.421 kb on + strand at 5.421 kb on + strand at 5.422 kb on - strand at 5.422 kb on - strand at 5.422 kb on - strand at 5.425 kb on + strand at 5.425 kb on + strand at 5.425 kb on + strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.622 kb on - strand, within LRK53_RS18155 at 5.979 kb on + strand, within LRK53_RS18155 at 6.036 kb on - strand, within LRK53_RS18155 at 6.179 kb on + strand, within LRK53_RS18155 at 6.334 kb on - strand, within LRK53_RS18155
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 3,844 + LRK53_RS18145 0.49 -0.7 3,844 + LRK53_RS18145 0.49 -0.5 3,844 + LRK53_RS18145 0.49 +0.9 3,844 + LRK53_RS18145 0.49 +1.1 3,844 + LRK53_RS18145 0.49 -1.0 3,844 + LRK53_RS18145 0.49 -0.9 3,844 + LRK53_RS18145 0.49 +0.4 3,845 - LRK53_RS18145 0.49 -0.9 3,845 - LRK53_RS18145 0.49 -1.1 3,845 - LRK53_RS18145 0.49 +0.3 3,845 - LRK53_RS18145 0.49 +0.4 3,845 - LRK53_RS18145 0.49 -0.6 3,845 - LRK53_RS18145 0.49 +0.4 3,845 - LRK53_RS18145 0.49 -0.4 3,845 - LRK53_RS18145 0.49 -0.4 3,845 - LRK53_RS18145 0.49 -1.3 3,845 - LRK53_RS18145 0.49 -0.4 3,845 - LRK53_RS18145 0.49 -0.6 3,845 - LRK53_RS18145 0.49 -0.9 4,673 - -0.1 4,758 + -0.6 4,758 + -1.9 4,758 + -0.9 4,758 + -1.4 4,758 + -1.3 4,758 + -0.4 4,759 - -1.2 4,759 - -0.4 4,759 - -1.9 4,759 - -2.1 5,197 + LRK53_RS18150 0.66 +0.9 5,197 + LRK53_RS18150 0.66 -0.1 5,197 + LRK53_RS18150 0.66 -1.6 5,197 + LRK53_RS18150 0.66 -0.4 5,197 + LRK53_RS18150 0.66 -2.7 5,197 + LRK53_RS18150 0.66 -1.0 5,197 + LRK53_RS18150 0.66 -2.3 5,197 + LRK53_RS18150 0.66 -2.3 5,197 + LRK53_RS18150 0.66 +1.0 5,197 + LRK53_RS18150 0.66 -0.7 5,197 + LRK53_RS18150 0.66 -0.4 5,197 + LRK53_RS18150 0.66 -0.7 5,197 + LRK53_RS18150 0.66 -0.4 5,197 + LRK53_RS18150 0.66 -0.4 5,197 + LRK53_RS18150 0.66 -0.9 5,198 - LRK53_RS18150 0.66 -1.6 5,198 - LRK53_RS18150 0.66 +0.3 5,198 - LRK53_RS18150 0.66 +0.4 5,198 - LRK53_RS18150 0.66 -0.4 5,198 - LRK53_RS18150 0.66 -0.4 5,198 - LRK53_RS18150 0.66 -2.4 5,198 - LRK53_RS18150 0.66 -2.4 5,198 - LRK53_RS18150 0.66 -1.3 5,198 - LRK53_RS18150 0.66 +1.0 5,198 - LRK53_RS18150 0.66 -0.7 5,198 - LRK53_RS18150 0.66 -0.1 5,198 - LRK53_RS18150 0.66 -1.1 5,421 + -0.7 5,421 + +1.1 5,421 + +1.9 5,421 + -0.4 5,421 + -0.3 5,422 - +0.6 5,422 - +0.3 5,422 - -0.4 5,425 + -1.0 5,425 + -1.8 5,425 + -0.4 5,426 - -1.8 5,426 - +0.1 5,426 - -1.6 5,426 - -0.2 5,426 - -0.5 5,426 - +0.7 5,622 - LRK53_RS18155 0.17 +0.6 5,979 + LRK53_RS18155 0.47 -0.9 6,036 - LRK53_RS18155 0.52 +2.9 6,179 + LRK53_RS18155 0.64 -0.4 6,334 - LRK53_RS18155 0.77 -1.1
Or see this region's nucleotide sequence