Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15030 and LRK53_RS15035 overlap by 4 nucleotides LRK53_RS15035 and LRK53_RS15040 are separated by 7 nucleotides LRK53_RS15040 and LRK53_RS15045 overlap by 4 nucleotides LRK53_RS15045 and LRK53_RS15050 are separated by 16 nucleotides LRK53_RS15050 and LRK53_RS15055 are separated by 229 nucleotides
LRK53_RS15030: LRK53_RS15030 - flagellar type III secretion system pore protein FliP, at 3,285,916 to 3,286,662
_RS15030
LRK53_RS15035: LRK53_RS15035 - flagellar biosynthetic protein FliO, at 3,286,659 to 3,287,069
_RS15035
LRK53_RS15040: LRK53_RS15040 - flagellar motor switch protein FliN, at 3,287,077 to 3,287,424
_RS15040
LRK53_RS15045: LRK53_RS15045 - flagellar motor switch protein FliM, at 3,287,421 to 3,288,437
_RS15045
LRK53_RS15050: LRK53_RS15050 - flagellar basal body-associated FliL family protein, at 3,288,454 to 3,288,987
_RS15050
LRK53_RS15055: LRK53_RS15055 - flagellar hook-length control protein FliK, at 3,289,217 to 3,290,317
_RS15055
Position (kb)
3287
3288
3289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3286.746 kb on + strand, within LRK53_RS15035 at 3286.757 kb on - strand, within LRK53_RS15035 at 3287.049 kb on + strand at 3287.049 kb on + strand at 3287.049 kb on + strand at 3287.049 kb on + strand at 3287.266 kb on - strand, within LRK53_RS15040 at 3287.524 kb on + strand, within LRK53_RS15045 at 3287.557 kb on + strand, within LRK53_RS15045 at 3287.557 kb on + strand, within LRK53_RS15045 at 3287.664 kb on + strand, within LRK53_RS15045 at 3287.664 kb on + strand, within LRK53_RS15045 at 3287.665 kb on - strand, within LRK53_RS15045 at 3287.665 kb on - strand, within LRK53_RS15045 at 3287.779 kb on + strand, within LRK53_RS15045 at 3287.902 kb on + strand, within LRK53_RS15045 at 3287.902 kb on + strand, within LRK53_RS15045 at 3288.090 kb on + strand, within LRK53_RS15045 at 3288.091 kb on - strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.325 kb on + strand, within LRK53_RS15045 at 3288.325 kb on + strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.480 kb on - strand at 3288.705 kb on - strand, within LRK53_RS15050 at 3288.705 kb on - strand, within LRK53_RS15050 at 3288.705 kb on - strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.836 kb on + strand, within LRK53_RS15050 at 3288.836 kb on + strand, within LRK53_RS15050 at 3288.836 kb on + strand, within LRK53_RS15050 at 3289.046 kb on + strand at 3289.046 kb on + strand at 3289.046 kb on + strand at 3289.046 kb on + strand at 3289.047 kb on - strand at 3289.047 kb on - strand at 3289.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 3,286,746 + LRK53_RS15035 0.21 -1.3 3,286,757 - LRK53_RS15035 0.24 -0.2 3,287,049 + +0.2 3,287,049 + -1.0 3,287,049 + -2.2 3,287,049 + -0.2 3,287,266 - LRK53_RS15040 0.54 +1.9 3,287,524 + LRK53_RS15045 0.10 -1.1 3,287,557 + LRK53_RS15045 0.13 -0.2 3,287,557 + LRK53_RS15045 0.13 -1.1 3,287,664 + LRK53_RS15045 0.24 -1.2 3,287,664 + LRK53_RS15045 0.24 -2.2 3,287,665 - LRK53_RS15045 0.24 -1.8 3,287,665 - LRK53_RS15045 0.24 -2.1 3,287,779 + LRK53_RS15045 0.35 +0.5 3,287,902 + LRK53_RS15045 0.47 -0.8 3,287,902 + LRK53_RS15045 0.47 +0.6 3,288,090 + LRK53_RS15045 0.66 -2.0 3,288,091 - LRK53_RS15045 0.66 -0.3 3,288,163 + LRK53_RS15045 0.73 -1.1 3,288,163 + LRK53_RS15045 0.73 -1.0 3,288,163 + LRK53_RS15045 0.73 -2.8 3,288,163 + LRK53_RS15045 0.73 +0.2 3,288,164 - LRK53_RS15045 0.73 +1.2 3,288,164 - LRK53_RS15045 0.73 +0.7 3,288,164 - LRK53_RS15045 0.73 -0.5 3,288,164 - LRK53_RS15045 0.73 -1.1 3,288,164 - LRK53_RS15045 0.73 +0.8 3,288,325 + LRK53_RS15045 0.89 -1.4 3,288,325 + LRK53_RS15045 0.89 -0.3 3,288,326 - LRK53_RS15045 0.89 -1.1 3,288,326 - LRK53_RS15045 0.89 -0.2 3,288,326 - LRK53_RS15045 0.89 -2.1 3,288,326 - LRK53_RS15045 0.89 -0.8 3,288,479 + +2.9 3,288,479 + -0.2 3,288,479 + -1.2 3,288,479 + -0.8 3,288,479 + -0.6 3,288,480 - -0.2 3,288,705 - LRK53_RS15050 0.47 -0.2 3,288,705 - LRK53_RS15050 0.47 -1.6 3,288,705 - LRK53_RS15050 0.47 +0.7 3,288,761 + LRK53_RS15050 0.57 -2.1 3,288,761 + LRK53_RS15050 0.57 +0.0 3,288,761 + LRK53_RS15050 0.57 +1.4 3,288,761 + LRK53_RS15050 0.57 -0.7 3,288,761 + LRK53_RS15050 0.57 -0.2 3,288,761 + LRK53_RS15050 0.57 +0.1 3,288,761 + LRK53_RS15050 0.57 -0.7 3,288,761 + LRK53_RS15050 0.57 +1.3 3,288,762 - LRK53_RS15050 0.58 -0.1 3,288,762 - LRK53_RS15050 0.58 -1.5 3,288,762 - LRK53_RS15050 0.58 -0.7 3,288,762 - LRK53_RS15050 0.58 +0.7 3,288,836 + LRK53_RS15050 0.72 -1.4 3,288,836 + LRK53_RS15050 0.72 -0.5 3,288,836 + LRK53_RS15050 0.72 +0.4 3,289,046 + -1.7 3,289,046 + -1.6 3,289,046 + -0.3 3,289,046 + -1.4 3,289,047 - -1.6 3,289,047 - +1.7 3,289,047 - -0.6
Or see this region's nucleotide sequence