Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14855 and LRK53_RS14860 are separated by 27 nucleotides LRK53_RS14860 and LRK53_RS14865 are separated by 202 nucleotides LRK53_RS14865 and LRK53_RS14870 are separated by 6 nucleotides
LRK53_RS14855: LRK53_RS14855 - PhoH family protein, at 3,251,894 to 3,252,916
_RS14855
LRK53_RS14860: LRK53_RS14860 - rRNA maturation RNase YbeY, at 3,252,944 to 3,253,441
_RS14860
LRK53_RS14865: LRK53_RS14865 - CBS domain-containing protein, at 3,253,644 to 3,254,483
_RS14865
LRK53_RS14870: LRK53_RS14870 - DUF4105 domain-containing protein, at 3,254,490 to 3,255,695
_RS14870
Position (kb)
3253
3254
3255 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3252.718 kb on + strand, within LRK53_RS14855 at 3252.839 kb on + strand at 3252.839 kb on + strand at 3252.840 kb on - strand at 3253.434 kb on - strand at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.145 kb on + strand, within LRK53_RS14865 at 3254.145 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 3,252,718 + LRK53_RS14855 0.81 +0.9 3,252,839 + -2.4 3,252,839 + -0.8 3,252,840 - -1.4 3,253,434 - -0.2 3,254,007 + LRK53_RS14865 0.43 -0.3 3,254,007 + LRK53_RS14865 0.43 -0.1 3,254,007 + LRK53_RS14865 0.43 -0.3 3,254,007 + LRK53_RS14865 0.43 -0.3 3,254,145 + LRK53_RS14865 0.60 -1.1 3,254,145 + LRK53_RS14865 0.60 -3.2 3,254,340 + LRK53_RS14865 0.83 +0.7 3,254,340 + LRK53_RS14865 0.83 +0.3 3,254,340 + LRK53_RS14865 0.83 -0.3 3,254,340 + LRK53_RS14865 0.83 -0.1 3,254,340 + LRK53_RS14865 0.83 +1.7 3,254,481 + -0.4 3,254,481 + -1.1 3,254,481 + -0.4 3,254,481 + -2.2 3,254,481 + -0.5 3,254,481 + -1.1 3,254,481 + -2.0
Or see this region's nucleotide sequence