Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11075 and LRK53_RS11080 overlap by 4 nucleotides LRK53_RS11080 and LRK53_RS11085 overlap by 4 nucleotides LRK53_RS11085 and LRK53_RS11090 are separated by 356 nucleotides
LRK53_RS11075: LRK53_RS11075 - thymidine phosphorylase family protein, at 2,473,926 to 2,475,440
_RS11075
LRK53_RS11080: LRK53_RS11080 - ribose-phosphate diphosphokinase, at 2,475,437 to 2,476,348
_RS11080
LRK53_RS11085: LRK53_RS11085 - hypothetical protein, at 2,476,345 to 2,477,307
_RS11085
LRK53_RS11090: LRK53_RS11090 - hypothetical protein, at 2,477,664 to 2,478,800
_RS11090
Position (kb)
2476
2477
2478 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2475.381 kb on + strand at 2475.393 kb on + strand at 2475.393 kb on + strand at 2475.393 kb on + strand at 2475.394 kb on - strand at 2475.394 kb on - strand at 2475.394 kb on - strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.437 kb on - strand at 2475.448 kb on - strand at 2475.702 kb on - strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.846 kb on + strand, within LRK53_RS11080 at 2475.846 kb on + strand, within LRK53_RS11080 at 2475.846 kb on + strand, within LRK53_RS11080 at 2475.847 kb on - strand, within LRK53_RS11080 at 2475.847 kb on - strand, within LRK53_RS11080 at 2475.847 kb on - strand, within LRK53_RS11080 at 2475.848 kb on + strand, within LRK53_RS11080 at 2475.849 kb on - strand, within LRK53_RS11080 at 2475.849 kb on - strand, within LRK53_RS11080 at 2475.992 kb on + strand, within LRK53_RS11080 at 2475.992 kb on + strand, within LRK53_RS11080 at 2475.992 kb on + strand, within LRK53_RS11080 at 2475.993 kb on - strand, within LRK53_RS11080 at 2475.993 kb on - strand, within LRK53_RS11080 at 2475.993 kb on - strand, within LRK53_RS11080 at 2476.026 kb on - strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.112 kb on - strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.202 kb on + strand, within LRK53_RS11080 at 2476.202 kb on + strand, within LRK53_RS11080 at 2476.203 kb on - strand, within LRK53_RS11080 at 2476.203 kb on - strand, within LRK53_RS11080 at 2476.212 kb on + strand, within LRK53_RS11080 at 2476.270 kb on + strand at 2476.270 kb on + strand at 2476.270 kb on + strand at 2476.270 kb on + strand at 2476.271 kb on - strand at 2476.428 kb on + strand at 2476.429 kb on - strand at 2476.468 kb on + strand, within LRK53_RS11085 at 2476.468 kb on + strand, within LRK53_RS11085 at 2476.469 kb on - strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.736 kb on - strand, within LRK53_RS11085 at 2476.736 kb on - strand, within LRK53_RS11085 at 2476.744 kb on + strand, within LRK53_RS11085 at 2476.744 kb on + strand, within LRK53_RS11085 at 2476.744 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.916 kb on - strand, within LRK53_RS11085 at 2476.916 kb on - strand, within LRK53_RS11085 at 2476.916 kb on - strand, within LRK53_RS11085 at 2476.921 kb on + strand, within LRK53_RS11085 at 2476.921 kb on + strand, within LRK53_RS11085 at 2476.921 kb on + strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.365 kb on - strand at 2477.917 kb on - strand, within LRK53_RS11090 at 2478.177 kb on + strand, within LRK53_RS11090 at 2478.177 kb on + strand, within LRK53_RS11090 at 2478.177 kb on + strand, within LRK53_RS11090 at 2478.177 kb on + strand, within LRK53_RS11090 at 2478.177 kb on + strand, within LRK53_RS11090 at 2478.178 kb on - strand, within LRK53_RS11090 at 2478.178 kb on - strand, within LRK53_RS11090 at 2478.178 kb on - strand, within LRK53_RS11090
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 2,475,381 + +0.1 2,475,393 + -2.3 2,475,393 + +0.7 2,475,393 + -1.3 2,475,394 - +1.1 2,475,394 - -0.0 2,475,394 - -0.1 2,475,436 + +1.0 2,475,436 + -0.8 2,475,436 + -0.8 2,475,436 + -0.4 2,475,436 + -1.3 2,475,437 - -0.4 2,475,448 - -1.6 2,475,702 - LRK53_RS11080 0.29 -0.4 2,475,710 + LRK53_RS11080 0.30 -0.2 2,475,710 + LRK53_RS11080 0.30 -1.2 2,475,710 + LRK53_RS11080 0.30 +1.6 2,475,710 + LRK53_RS11080 0.30 -2.4 2,475,710 + LRK53_RS11080 0.30 +0.8 2,475,710 + LRK53_RS11080 0.30 -2.0 2,475,710 + LRK53_RS11080 0.30 -1.4 2,475,710 + LRK53_RS11080 0.30 -1.7 2,475,710 + LRK53_RS11080 0.30 -1.2 2,475,710 + LRK53_RS11080 0.30 -0.6 2,475,710 + LRK53_RS11080 0.30 -2.5 2,475,710 + LRK53_RS11080 0.30 -1.0 2,475,711 - LRK53_RS11080 0.30 -1.0 2,475,711 - LRK53_RS11080 0.30 -1.0 2,475,711 - LRK53_RS11080 0.30 -0.9 2,475,711 - LRK53_RS11080 0.30 -1.1 2,475,711 - LRK53_RS11080 0.30 -0.8 2,475,711 - LRK53_RS11080 0.30 -1.0 2,475,711 - LRK53_RS11080 0.30 -0.7 2,475,711 - LRK53_RS11080 0.30 -2.8 2,475,711 - LRK53_RS11080 0.30 -0.8 2,475,711 - LRK53_RS11080 0.30 -0.9 2,475,711 - LRK53_RS11080 0.30 -0.7 2,475,711 - LRK53_RS11080 0.30 +1.1 2,475,711 - LRK53_RS11080 0.30 -0.6 2,475,711 - LRK53_RS11080 0.30 -0.6 2,475,711 - LRK53_RS11080 0.30 +0.6 2,475,846 + LRK53_RS11080 0.45 -0.7 2,475,846 + LRK53_RS11080 0.45 -1.8 2,475,846 + LRK53_RS11080 0.45 +0.4 2,475,847 - LRK53_RS11080 0.45 -1.2 2,475,847 - LRK53_RS11080 0.45 -0.9 2,475,847 - LRK53_RS11080 0.45 +0.6 2,475,848 + LRK53_RS11080 0.45 -0.3 2,475,849 - LRK53_RS11080 0.45 -0.1 2,475,849 - LRK53_RS11080 0.45 -0.5 2,475,992 + LRK53_RS11080 0.61 -1.3 2,475,992 + LRK53_RS11080 0.61 -2.1 2,475,992 + LRK53_RS11080 0.61 -1.3 2,475,993 - LRK53_RS11080 0.61 -0.1 2,475,993 - LRK53_RS11080 0.61 -2.8 2,475,993 - LRK53_RS11080 0.61 +0.1 2,476,026 - LRK53_RS11080 0.65 +0.6 2,476,032 + LRK53_RS11080 0.65 -0.8 2,476,032 + LRK53_RS11080 0.65 -1.1 2,476,032 + LRK53_RS11080 0.65 +1.3 2,476,032 + LRK53_RS11080 0.65 +0.1 2,476,032 + LRK53_RS11080 0.65 -0.6 2,476,032 + LRK53_RS11080 0.65 -0.3 2,476,032 + LRK53_RS11080 0.65 +0.0 2,476,032 + LRK53_RS11080 0.65 -0.3 2,476,033 - LRK53_RS11080 0.65 -1.4 2,476,033 - LRK53_RS11080 0.65 -0.6 2,476,033 - LRK53_RS11080 0.65 -0.1 2,476,033 - LRK53_RS11080 0.65 -2.0 2,476,033 - LRK53_RS11080 0.65 +1.0 2,476,033 - LRK53_RS11080 0.65 -1.6 2,476,033 - LRK53_RS11080 0.65 -1.6 2,476,112 - LRK53_RS11080 0.74 -1.3 2,476,137 + LRK53_RS11080 0.77 +1.3 2,476,137 + LRK53_RS11080 0.77 -0.9 2,476,137 + LRK53_RS11080 0.77 -0.8 2,476,137 + LRK53_RS11080 0.77 +0.3 2,476,202 + LRK53_RS11080 0.84 -0.1 2,476,202 + LRK53_RS11080 0.84 +0.1 2,476,203 - LRK53_RS11080 0.84 -1.0 2,476,203 - LRK53_RS11080 0.84 -1.2 2,476,212 + LRK53_RS11080 0.85 -0.3 2,476,270 + +0.2 2,476,270 + +0.9 2,476,270 + +0.5 2,476,270 + -0.6 2,476,271 - -0.3 2,476,428 + -0.2 2,476,429 - -0.8 2,476,468 + LRK53_RS11085 0.13 -1.8 2,476,468 + LRK53_RS11085 0.13 +0.2 2,476,469 - LRK53_RS11085 0.13 -1.9 2,476,626 + LRK53_RS11085 0.29 +0.6 2,476,626 + LRK53_RS11085 0.29 -0.7 2,476,626 + LRK53_RS11085 0.29 -1.6 2,476,626 + LRK53_RS11085 0.29 -1.3 2,476,626 + LRK53_RS11085 0.29 -0.7 2,476,626 + LRK53_RS11085 0.29 -2.0 2,476,626 + LRK53_RS11085 0.29 +0.7 2,476,626 + LRK53_RS11085 0.29 -0.3 2,476,626 + LRK53_RS11085 0.29 +0.6 2,476,626 + LRK53_RS11085 0.29 -0.8 2,476,626 + LRK53_RS11085 0.29 -1.8 2,476,626 + LRK53_RS11085 0.29 -0.4 2,476,626 + LRK53_RS11085 0.29 -1.3 2,476,626 + LRK53_RS11085 0.29 -2.4 2,476,626 + LRK53_RS11085 0.29 -2.5 2,476,626 + LRK53_RS11085 0.29 -1.5 2,476,626 + LRK53_RS11085 0.29 -0.7 2,476,626 + LRK53_RS11085 0.29 +0.3 2,476,626 + LRK53_RS11085 0.29 -0.3 2,476,627 - LRK53_RS11085 0.29 -0.9 2,476,627 - LRK53_RS11085 0.29 +0.3 2,476,627 - LRK53_RS11085 0.29 -0.4 2,476,627 - LRK53_RS11085 0.29 -1.5 2,476,627 - LRK53_RS11085 0.29 -1.0 2,476,627 - LRK53_RS11085 0.29 +0.1 2,476,627 - LRK53_RS11085 0.29 -1.0 2,476,627 - LRK53_RS11085 0.29 +0.3 2,476,627 - LRK53_RS11085 0.29 -0.7 2,476,627 - LRK53_RS11085 0.29 -0.2 2,476,627 - LRK53_RS11085 0.29 -1.6 2,476,627 - LRK53_RS11085 0.29 -2.1 2,476,627 - LRK53_RS11085 0.29 -1.8 2,476,627 - LRK53_RS11085 0.29 -1.8 2,476,627 - LRK53_RS11085 0.29 -1.0 2,476,627 - LRK53_RS11085 0.29 -0.6 2,476,633 + LRK53_RS11085 0.30 -0.1 2,476,633 + LRK53_RS11085 0.30 -0.6 2,476,633 + LRK53_RS11085 0.30 -1.9 2,476,633 + LRK53_RS11085 0.30 -0.8 2,476,633 + LRK53_RS11085 0.30 -1.3 2,476,634 - LRK53_RS11085 0.30 -0.8 2,476,634 - LRK53_RS11085 0.30 +0.3 2,476,634 - LRK53_RS11085 0.30 +0.2 2,476,634 - LRK53_RS11085 0.30 -1.2 2,476,634 - LRK53_RS11085 0.30 -0.2 2,476,736 - LRK53_RS11085 0.41 -0.1 2,476,736 - LRK53_RS11085 0.41 -1.2 2,476,744 + LRK53_RS11085 0.41 -1.3 2,476,744 + LRK53_RS11085 0.41 -1.5 2,476,744 + LRK53_RS11085 0.41 -0.8 2,476,801 + LRK53_RS11085 0.47 +0.2 2,476,801 + LRK53_RS11085 0.47 -0.2 2,476,801 + LRK53_RS11085 0.47 -0.5 2,476,801 + LRK53_RS11085 0.47 -1.3 2,476,915 + LRK53_RS11085 0.59 -2.4 2,476,915 + LRK53_RS11085 0.59 -0.4 2,476,915 + LRK53_RS11085 0.59 +0.4 2,476,915 + LRK53_RS11085 0.59 -0.5 2,476,915 + LRK53_RS11085 0.59 +0.3 2,476,916 - LRK53_RS11085 0.59 +0.9 2,476,916 - LRK53_RS11085 0.59 -0.4 2,476,916 - LRK53_RS11085 0.59 -1.7 2,476,921 + LRK53_RS11085 0.60 -1.5 2,476,921 + LRK53_RS11085 0.60 -0.7 2,476,921 + LRK53_RS11085 0.60 -0.7 2,476,922 - LRK53_RS11085 0.60 -0.8 2,476,922 - LRK53_RS11085 0.60 +0.9 2,476,922 - LRK53_RS11085 0.60 -0.9 2,476,922 - LRK53_RS11085 0.60 +1.4 2,477,031 + LRK53_RS11085 0.71 -1.8 2,477,031 + LRK53_RS11085 0.71 -0.7 2,477,031 + LRK53_RS11085 0.71 -0.1 2,477,031 + LRK53_RS11085 0.71 -1.0 2,477,031 + LRK53_RS11085 0.71 -0.7 2,477,031 + LRK53_RS11085 0.71 -1.1 2,477,031 + LRK53_RS11085 0.71 +0.7 2,477,031 + LRK53_RS11085 0.71 -1.3 2,477,032 - LRK53_RS11085 0.71 -1.4 2,477,032 - LRK53_RS11085 0.71 -0.1 2,477,032 - LRK53_RS11085 0.71 -0.3 2,477,032 - LRK53_RS11085 0.71 -1.1 2,477,032 - LRK53_RS11085 0.71 -0.5 2,477,032 - LRK53_RS11085 0.71 -2.8 2,477,365 - -0.1 2,477,917 - LRK53_RS11090 0.22 -0.8 2,478,177 + LRK53_RS11090 0.45 +0.2 2,478,177 + LRK53_RS11090 0.45 +0.6 2,478,177 + LRK53_RS11090 0.45 -0.8 2,478,177 + LRK53_RS11090 0.45 +0.2 2,478,177 + LRK53_RS11090 0.45 -1.2 2,478,178 - LRK53_RS11090 0.45 -1.6 2,478,178 - LRK53_RS11090 0.45 -2.0 2,478,178 - LRK53_RS11090 0.45 -1.1
Or see this region's nucleotide sequence