Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09140 and LRK53_RS09145 are separated by 17 nucleotides LRK53_RS09145 and LRK53_RS09150 are separated by 206 nucleotides
LRK53_RS09140: LRK53_RS09140 - YhdH/YhfP family quinone oxidoreductase, at 2,043,207 to 2,044,205
_RS09140
LRK53_RS09145: LRK53_RS09145 - TIGR00730 family Rossman fold protein, at 2,044,223 to 2,044,819
_RS09145
LRK53_RS09150: LRK53_RS09150 - dihydrolipoyl dehydrogenase, at 2,045,026 to 2,046,450
_RS09150
Position (kb)
2044
2045 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2043.682 kb on + strand, within LRK53_RS09140 at 2043.683 kb on - strand, within LRK53_RS09140 at 2043.895 kb on + strand, within LRK53_RS09140 at 2043.895 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.075 kb on + strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.076 kb on - strand, within LRK53_RS09140 at 2044.090 kb on + strand, within LRK53_RS09140 at 2044.090 kb on + strand, within LRK53_RS09140 at 2044.090 kb on + strand, within LRK53_RS09140 at 2044.091 kb on - strand, within LRK53_RS09140 at 2044.091 kb on - strand, within LRK53_RS09140 at 2044.091 kb on - strand, within LRK53_RS09140 at 2044.091 kb on - strand, within LRK53_RS09140 at 2044.263 kb on + strand at 2044.263 kb on + strand at 2044.263 kb on + strand at 2044.263 kb on + strand at 2044.263 kb on + strand at 2044.263 kb on + strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.264 kb on - strand at 2044.275 kb on + strand at 2044.276 kb on - strand at 2044.276 kb on - strand at 2044.276 kb on - strand at 2044.276 kb on - strand at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.322 kb on + strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.323 kb on - strand, within LRK53_RS09145 at 2044.395 kb on + strand, within LRK53_RS09145 at 2044.395 kb on + strand, within LRK53_RS09145 at 2044.395 kb on + strand, within LRK53_RS09145 at 2044.396 kb on - strand, within LRK53_RS09145 at 2044.398 kb on + strand, within LRK53_RS09145 at 2044.398 kb on + strand, within LRK53_RS09145 at 2044.398 kb on + strand, within LRK53_RS09145 at 2044.399 kb on - strand, within LRK53_RS09145 at 2044.399 kb on - strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.527 kb on + strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.528 kb on - strand, within LRK53_RS09145 at 2044.698 kb on + strand, within LRK53_RS09145 at 2044.698 kb on + strand, within LRK53_RS09145 at 2044.698 kb on + strand, within LRK53_RS09145 at 2044.698 kb on + strand, within LRK53_RS09145 at 2044.698 kb on + strand, within LRK53_RS09145 at 2044.699 kb on - strand, within LRK53_RS09145 at 2044.699 kb on - strand, within LRK53_RS09145 at 2044.699 kb on - strand, within LRK53_RS09145 at 2044.699 kb on - strand, within LRK53_RS09145 at 2044.699 kb on - strand, within LRK53_RS09145 at 2044.758 kb on + strand, within LRK53_RS09145 at 2044.759 kb on - strand, within LRK53_RS09145 at 2044.759 kb on - strand, within LRK53_RS09145 at 2044.791 kb on + strand at 2044.791 kb on + strand at 2044.791 kb on + strand at 2044.791 kb on + strand at 2044.791 kb on + strand at 2044.791 kb on + strand at 2044.791 kb on + strand at 2044.792 kb on - strand at 2044.792 kb on - strand at 2044.847 kb on - strand at 2044.847 kb on - strand at 2044.847 kb on - strand at 2044.921 kb on + strand at 2044.921 kb on + strand at 2044.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 2,043,682 + LRK53_RS09140 0.48 -0.0 2,043,683 - LRK53_RS09140 0.48 -0.2 2,043,895 + LRK53_RS09140 0.69 -0.9 2,043,895 + LRK53_RS09140 0.69 -0.0 2,044,075 + LRK53_RS09140 0.87 +1.2 2,044,075 + LRK53_RS09140 0.87 -0.2 2,044,075 + LRK53_RS09140 0.87 -1.8 2,044,075 + LRK53_RS09140 0.87 -1.6 2,044,075 + LRK53_RS09140 0.87 -1.4 2,044,075 + LRK53_RS09140 0.87 -2.0 2,044,075 + LRK53_RS09140 0.87 -3.0 2,044,075 + LRK53_RS09140 0.87 -0.9 2,044,075 + LRK53_RS09140 0.87 -0.6 2,044,075 + LRK53_RS09140 0.87 -1.7 2,044,075 + LRK53_RS09140 0.87 -0.6 2,044,076 - LRK53_RS09140 0.87 -1.8 2,044,076 - LRK53_RS09140 0.87 -1.1 2,044,076 - LRK53_RS09140 0.87 -0.7 2,044,076 - LRK53_RS09140 0.87 -0.3 2,044,076 - LRK53_RS09140 0.87 -1.6 2,044,076 - LRK53_RS09140 0.87 -1.1 2,044,076 - LRK53_RS09140 0.87 -0.1 2,044,076 - LRK53_RS09140 0.87 +0.0 2,044,076 - LRK53_RS09140 0.87 -0.9 2,044,076 - LRK53_RS09140 0.87 +0.6 2,044,090 + LRK53_RS09140 0.88 -1.8 2,044,090 + LRK53_RS09140 0.88 -1.3 2,044,090 + LRK53_RS09140 0.88 +0.4 2,044,091 - LRK53_RS09140 0.88 -2.0 2,044,091 - LRK53_RS09140 0.88 -1.6 2,044,091 - LRK53_RS09140 0.88 -1.6 2,044,091 - LRK53_RS09140 0.88 -0.8 2,044,263 + -1.0 2,044,263 + -1.2 2,044,263 + -0.0 2,044,263 + -0.9 2,044,263 + -1.1 2,044,263 + -0.4 2,044,264 - +2.1 2,044,264 - -0.0 2,044,264 - -0.2 2,044,264 - -0.6 2,044,264 - -3.5 2,044,264 - -1.4 2,044,264 - -0.6 2,044,264 - -0.4 2,044,264 - -0.7 2,044,264 - -0.6 2,044,264 - -1.0 2,044,275 + -0.8 2,044,276 - -1.4 2,044,276 - -1.1 2,044,276 - -0.4 2,044,276 - -1.4 2,044,322 + LRK53_RS09145 0.17 -0.0 2,044,322 + LRK53_RS09145 0.17 -1.0 2,044,322 + LRK53_RS09145 0.17 -0.9 2,044,322 + LRK53_RS09145 0.17 +0.3 2,044,322 + LRK53_RS09145 0.17 -0.7 2,044,322 + LRK53_RS09145 0.17 -0.0 2,044,322 + LRK53_RS09145 0.17 -0.6 2,044,322 + LRK53_RS09145 0.17 -0.5 2,044,322 + LRK53_RS09145 0.17 -1.1 2,044,322 + LRK53_RS09145 0.17 -0.6 2,044,322 + LRK53_RS09145 0.17 -1.5 2,044,322 + LRK53_RS09145 0.17 -0.9 2,044,322 + LRK53_RS09145 0.17 -0.5 2,044,322 + LRK53_RS09145 0.17 -0.4 2,044,322 + LRK53_RS09145 0.17 -0.8 2,044,322 + LRK53_RS09145 0.17 -1.0 2,044,322 + LRK53_RS09145 0.17 -1.8 2,044,322 + LRK53_RS09145 0.17 -2.2 2,044,322 + LRK53_RS09145 0.17 -1.0 2,044,322 + LRK53_RS09145 0.17 -0.5 2,044,322 + LRK53_RS09145 0.17 -1.6 2,044,322 + LRK53_RS09145 0.17 -1.9 2,044,322 + LRK53_RS09145 0.17 -1.5 2,044,322 + LRK53_RS09145 0.17 -0.9 2,044,322 + LRK53_RS09145 0.17 -1.0 2,044,322 + LRK53_RS09145 0.17 -0.3 2,044,322 + LRK53_RS09145 0.17 -2.0 2,044,322 + LRK53_RS09145 0.17 -2.2 2,044,322 + LRK53_RS09145 0.17 -2.0 2,044,322 + LRK53_RS09145 0.17 +0.4 2,044,322 + LRK53_RS09145 0.17 -1.2 2,044,322 + LRK53_RS09145 0.17 -0.8 2,044,322 + LRK53_RS09145 0.17 -1.0 2,044,322 + LRK53_RS09145 0.17 -0.8 2,044,322 + LRK53_RS09145 0.17 -0.9 2,044,322 + LRK53_RS09145 0.17 -2.8 2,044,322 + LRK53_RS09145 0.17 -0.3 2,044,323 - LRK53_RS09145 0.17 -1.7 2,044,323 - LRK53_RS09145 0.17 -1.4 2,044,323 - LRK53_RS09145 0.17 -0.8 2,044,323 - LRK53_RS09145 0.17 -1.7 2,044,323 - LRK53_RS09145 0.17 -0.4 2,044,323 - LRK53_RS09145 0.17 -0.4 2,044,323 - LRK53_RS09145 0.17 -1.9 2,044,323 - LRK53_RS09145 0.17 -1.8 2,044,323 - LRK53_RS09145 0.17 -0.7 2,044,323 - LRK53_RS09145 0.17 -0.7 2,044,323 - LRK53_RS09145 0.17 -1.0 2,044,323 - LRK53_RS09145 0.17 +0.4 2,044,323 - LRK53_RS09145 0.17 -2.1 2,044,323 - LRK53_RS09145 0.17 -1.3 2,044,323 - LRK53_RS09145 0.17 +0.5 2,044,323 - LRK53_RS09145 0.17 -1.1 2,044,323 - LRK53_RS09145 0.17 -0.4 2,044,323 - LRK53_RS09145 0.17 -2.2 2,044,323 - LRK53_RS09145 0.17 -2.1 2,044,323 - LRK53_RS09145 0.17 -1.6 2,044,323 - LRK53_RS09145 0.17 -1.8 2,044,323 - LRK53_RS09145 0.17 -1.0 2,044,323 - LRK53_RS09145 0.17 -0.7 2,044,323 - LRK53_RS09145 0.17 -1.7 2,044,323 - LRK53_RS09145 0.17 +0.9 2,044,323 - LRK53_RS09145 0.17 -0.9 2,044,323 - LRK53_RS09145 0.17 -0.3 2,044,395 + LRK53_RS09145 0.29 -0.1 2,044,395 + LRK53_RS09145 0.29 -1.7 2,044,395 + LRK53_RS09145 0.29 -0.7 2,044,396 - LRK53_RS09145 0.29 -1.3 2,044,398 + LRK53_RS09145 0.29 -1.8 2,044,398 + LRK53_RS09145 0.29 -1.3 2,044,398 + LRK53_RS09145 0.29 -0.8 2,044,399 - LRK53_RS09145 0.29 -1.0 2,044,399 - LRK53_RS09145 0.29 -1.3 2,044,527 + LRK53_RS09145 0.51 -1.2 2,044,527 + LRK53_RS09145 0.51 -0.5 2,044,527 + LRK53_RS09145 0.51 -1.0 2,044,527 + LRK53_RS09145 0.51 -2.5 2,044,527 + LRK53_RS09145 0.51 -1.9 2,044,527 + LRK53_RS09145 0.51 -1.9 2,044,527 + LRK53_RS09145 0.51 -1.8 2,044,527 + LRK53_RS09145 0.51 -1.7 2,044,527 + LRK53_RS09145 0.51 -1.5 2,044,527 + LRK53_RS09145 0.51 +0.4 2,044,527 + LRK53_RS09145 0.51 +0.3 2,044,527 + LRK53_RS09145 0.51 -0.6 2,044,527 + LRK53_RS09145 0.51 -1.4 2,044,527 + LRK53_RS09145 0.51 -0.9 2,044,527 + LRK53_RS09145 0.51 -1.0 2,044,527 + LRK53_RS09145 0.51 -0.8 2,044,527 + LRK53_RS09145 0.51 -2.6 2,044,527 + LRK53_RS09145 0.51 -0.9 2,044,527 + LRK53_RS09145 0.51 -2.1 2,044,527 + LRK53_RS09145 0.51 -1.1 2,044,527 + LRK53_RS09145 0.51 -0.9 2,044,527 + LRK53_RS09145 0.51 -2.1 2,044,528 - LRK53_RS09145 0.51 +1.0 2,044,528 - LRK53_RS09145 0.51 +0.6 2,044,528 - LRK53_RS09145 0.51 -0.8 2,044,528 - LRK53_RS09145 0.51 +0.3 2,044,528 - LRK53_RS09145 0.51 -1.4 2,044,528 - LRK53_RS09145 0.51 -0.9 2,044,528 - LRK53_RS09145 0.51 -1.6 2,044,528 - LRK53_RS09145 0.51 -3.4 2,044,528 - LRK53_RS09145 0.51 -0.4 2,044,528 - LRK53_RS09145 0.51 -2.2 2,044,528 - LRK53_RS09145 0.51 -1.4 2,044,528 - LRK53_RS09145 0.51 -1.8 2,044,528 - LRK53_RS09145 0.51 -1.7 2,044,528 - LRK53_RS09145 0.51 -0.4 2,044,528 - LRK53_RS09145 0.51 -0.2 2,044,528 - LRK53_RS09145 0.51 -0.7 2,044,528 - LRK53_RS09145 0.51 -1.4 2,044,528 - LRK53_RS09145 0.51 +0.1 2,044,528 - LRK53_RS09145 0.51 -2.0 2,044,528 - LRK53_RS09145 0.51 -1.4 2,044,528 - LRK53_RS09145 0.51 -0.1 2,044,528 - LRK53_RS09145 0.51 -1.0 2,044,528 - LRK53_RS09145 0.51 -2.1 2,044,528 - LRK53_RS09145 0.51 -1.9 2,044,528 - LRK53_RS09145 0.51 -2.4 2,044,528 - LRK53_RS09145 0.51 -1.6 2,044,528 - LRK53_RS09145 0.51 -0.7 2,044,528 - LRK53_RS09145 0.51 +0.1 2,044,528 - LRK53_RS09145 0.51 -0.4 2,044,528 - LRK53_RS09145 0.51 -0.9 2,044,528 - LRK53_RS09145 0.51 -0.8 2,044,528 - LRK53_RS09145 0.51 -2.0 2,044,698 + LRK53_RS09145 0.80 -0.8 2,044,698 + LRK53_RS09145 0.80 -0.9 2,044,698 + LRK53_RS09145 0.80 -0.3 2,044,698 + LRK53_RS09145 0.80 -0.2 2,044,698 + LRK53_RS09145 0.80 -1.0 2,044,699 - LRK53_RS09145 0.80 -2.6 2,044,699 - LRK53_RS09145 0.80 +1.4 2,044,699 - LRK53_RS09145 0.80 -0.9 2,044,699 - LRK53_RS09145 0.80 +0.5 2,044,699 - LRK53_RS09145 0.80 -1.9 2,044,758 + LRK53_RS09145 0.90 -2.6 2,044,759 - LRK53_RS09145 0.90 +0.5 2,044,759 - LRK53_RS09145 0.90 -0.7 2,044,791 + -0.4 2,044,791 + -2.0 2,044,791 + -0.5 2,044,791 + -2.0 2,044,791 + -1.0 2,044,791 + -0.3 2,044,791 + -0.9 2,044,792 - -0.8 2,044,792 - -0.4 2,044,847 - -0.8 2,044,847 - -1.2 2,044,847 - +1.5 2,044,921 + -1.9 2,044,921 + -0.9 2,044,922 - -0.8
Or see this region's nucleotide sequence